This is the Continuous Integration Build of FHIR (will be incorrect/inconsistent at times).
See the Directory of published versions
Biomedical Research and Regulation Work Group | Maturity Level: 0 | Trial Use | Security Category: Anonymous | Compartments: No defined compartments |
Detailed Descriptions for the elements in the SubstanceSourceMaterial resource.
SubstanceSourceMaterial | |
Element Id | SubstanceSourceMaterial |
Definition | Source material shall capture information on the taxonomic and anatomical origins as well as the fraction of a material that can result in or can be modified to form a substance. This set of data elements shall be used to define polymer substances isolated from biological matrices. Taxonomic and anatomical origins shall be described using a controlled vocabulary as required. This information is captured for naturally derived polymers ( . starch) and structurally diverse substances. For Organisms belonging to the Kingdom Plantae the Substance level defines the fresh material of a single species or infraspecies, the Herbal Drug and the Herbal preparation. For Herbal preparations, the fraction information will be captured at the Substance information level and additional information for herbal extracts will be captured at the Specified Substance Group 1 information level. See for further explanation the Substance Class: Structurally Diverse and the herbal annex. |
Short Display | Source material shall capture information on the taxonomic and anatomical origins as well as the fraction of a material that can result in or can be modified to form a substance. This set of data elements shall be used to define polymer substances isolated from biological matrices. Taxonomic and anatomical origins shall be described using a controlled vocabulary as required. This information is captured for naturally derived polymers ( . starch) and structurally diverse substances. For Organisms belonging to the Kingdom Plantae the Substance level defines the fresh material of a single species or infraspecies, the Herbal Drug and the Herbal preparation. For Herbal preparations, the fraction information will be captured at the Substance information level and additional information for herbal extracts will be captured at the Specified Substance Group 1 information level. See for further explanation the Substance Class: Structurally Diverse and the herbal annex |
Cardinality | 0..* |
Type | DomainResource |
Summary | false |
SubstanceSourceMaterial.sourceMaterialClass | |
Element Id | SubstanceSourceMaterial.sourceMaterialClass |
Definition | General high level classification of the source material specific to the origin of the material. |
Short Display | General high level classification of the source material specific to the origin of the material |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.sourceMaterialType | |
Element Id | SubstanceSourceMaterial.sourceMaterialType |
Definition | The type of the source material shall be specified based on a controlled vocabulary. For vaccines, this subclause refers to the class of infectious agent. |
Short Display | The type of the source material shall be specified based on a controlled vocabulary. For vaccines, this subclause refers to the class of infectious agent |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.sourceMaterialState | |
Element Id | SubstanceSourceMaterial.sourceMaterialState |
Definition | The state of the source material when extracted. |
Short Display | The state of the source material when extracted |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organismId | |
Element Id | SubstanceSourceMaterial.organismId |
Definition | The unique identifier associated with the source material parent organism shall be specified. |
Short Display | The unique identifier associated with the source material parent organism shall be specified |
Cardinality | 0..1 |
Type | Identifier |
Summary | true |
SubstanceSourceMaterial.organismName | |
Element Id | SubstanceSourceMaterial.organismName |
Definition | The organism accepted Scientific name shall be provided based on the organism taxonomy. |
Short Display | The organism accepted Scientific name shall be provided based on the organism taxonomy |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.parentSubstanceId | |
Element Id | SubstanceSourceMaterial.parentSubstanceId |
Definition | The parent of the herbal drug Ginkgo biloba, Leaf is the substance ID of the substance (fresh) of Ginkgo biloba L. or Ginkgo biloba L. (Whole plant). |
Short Display | The parent of the herbal drug Ginkgo biloba, Leaf is the substance ID of the substance (fresh) of Ginkgo biloba L. or Ginkgo biloba L. (Whole plant) |
Cardinality | 0..* |
Type | Identifier |
Summary | true |
SubstanceSourceMaterial.parentSubstanceName | |
Element Id | SubstanceSourceMaterial.parentSubstanceName |
Definition | The parent substance of the Herbal Drug, or Herbal preparation. |
Short Display | The parent substance of the Herbal Drug, or Herbal preparation |
Cardinality | 0..* |
Type | string |
Summary | true |
SubstanceSourceMaterial.countryOfOrigin | |
Element Id | SubstanceSourceMaterial.countryOfOrigin |
Definition | The country where the plant material is harvested or the countries where the plasma is sourced from as laid down in accordance with the Plasma Master File. For “Plasma-derived substances” the attribute country of origin provides information about the countries used for the manufacturing of the Cryopoor plama or Crioprecipitate. |
Short Display | The country where the plant material is harvested or the countries where the plasma is sourced from as laid down in accordance with the Plasma Master File. For “Plasma-derived substances” the attribute country of origin provides information about the countries used for the manufacturing of the Cryopoor plama or Crioprecipitate |
Cardinality | 0..* |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.geographicalLocation | |
Element Id | SubstanceSourceMaterial.geographicalLocation |
Definition | The place/region where the plant is harvested or the places/regions where the animal source material has its habitat. |
Short Display | The place/region where the plant is harvested or the places/regions where the animal source material has its habitat |
Cardinality | 0..* |
Type | string |
Summary | true |
SubstanceSourceMaterial.developmentStage | |
Element Id | SubstanceSourceMaterial.developmentStage |
Definition | Stage of life for animals, plants, insects and microorganisms. This information shall be provided only when the substance is significantly different in these stages (e.g. foetal bovine serum). |
Short Display | Stage of life for animals, plants, insects and microorganisms. This information shall be provided only when the substance is significantly different in these stages (e.g. foetal bovine serum) |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.fractionDescription | |
Element Id | SubstanceSourceMaterial.fractionDescription |
Definition | Many complex materials are fractions of parts of plants, animals, or minerals. Fraction elements are often necessary to define both Substances and Specified Group 1 Substances. For substances derived from Plants, fraction information will be captured at the Substance information level ( . Oils, Juices and Exudates). Additional information for Extracts, such as extraction solvent composition, will be captured at the Specified Substance Group 1 information level. For plasma-derived products fraction information will be captured at the Substance and the Specified Substance Group 1 levels. |
Short Display | Many complex materials are fractions of parts of plants, animals, or minerals. Fraction elements are often necessary to define both Substances and Specified Group 1 Substances. For substances derived from Plants, fraction information will be captured at the Substance information level ( . Oils, Juices and Exudates). Additional information for Extracts, such as extraction solvent composition, will be captured at the Specified Substance Group 1 information level. For plasma-derived products fraction information will be captured at the Substance and the Specified Substance Group 1 levels |
Cardinality | 0..* |
Summary | true |
SubstanceSourceMaterial.fractionDescription.fraction | |
Element Id | SubstanceSourceMaterial.fractionDescription.fraction |
Definition | This element is capturing information about the fraction of a plant part, or human plasma for fractionation. |
Short Display | This element is capturing information about the fraction of a plant part, or human plasma for fractionation |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.fractionDescription.materialType | |
Element Id | SubstanceSourceMaterial.fractionDescription.materialType |
Definition | The specific type of the material constituting the component. For Herbal preparations the particulars of the extracts (liquid/dry) is described in Specified Substance Group 1. |
Short Display | The specific type of the material constituting the component. For Herbal preparations the particulars of the extracts (liquid/dry) is described in Specified Substance Group 1 |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism | |
Element Id | SubstanceSourceMaterial.organism |
Definition | This subclause describes the organism which the substance is derived from. For vaccines, the parent organism shall be specified based on these subclause elements. As an example, full taxonomy will be described for the Substance Name: ., Leaf. |
Short Display | This subclause describes the organism which the substance is derived from. For vaccines, the parent organism shall be specified based on these subclause elements. As an example, full taxonomy will be described for the Substance Name: ., Leaf |
Cardinality | 0..1 |
Summary | true |
SubstanceSourceMaterial.organism.family | |
Element Id | SubstanceSourceMaterial.organism.family |
Definition | The family of an organism shall be specified. |
Short Display | The family of an organism shall be specified |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.genus | |
Element Id | SubstanceSourceMaterial.organism.genus |
Definition | The genus of an organism shall be specified; refers to the Latin epithet of the genus element of the plant/animal scientific name; it is present in names for genera, species and infraspecies. |
Short Display | The genus of an organism shall be specified; refers to the Latin epithet of the genus element of the plant/animal scientific name; it is present in names for genera, species and infraspecies |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.species | |
Element Id | SubstanceSourceMaterial.organism.species |
Definition | The species of an organism shall be specified; refers to the Latin epithet of the species of the plant/animal; it is present in names for species and infraspecies. |
Short Display | The species of an organism shall be specified; refers to the Latin epithet of the species of the plant/animal; it is present in names for species and infraspecies |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.intraspecificType | |
Element Id | SubstanceSourceMaterial.organism.intraspecificType |
Definition | The Intraspecific type of an organism shall be specified. |
Short Display | The Intraspecific type of an organism shall be specified |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.intraspecificDescription | |
Element Id | SubstanceSourceMaterial.organism.intraspecificDescription |
Definition | The intraspecific description of an organism shall be specified based on a controlled vocabulary. For Influenza Vaccine, the intraspecific description shall contain the syntax of the antigen in line with the WHO convention. |
Short Display | The intraspecific description of an organism shall be specified based on a controlled vocabulary. For Influenza Vaccine, the intraspecific description shall contain the syntax of the antigen in line with the WHO convention |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.organism.author | |
Element Id | SubstanceSourceMaterial.organism.author |
Definition | 4.9.13.6.1 Author type (Conditional). |
Short Display | 4.9.13.6.1 Author type (Conditional) |
Cardinality | 0..* |
Summary | true |
SubstanceSourceMaterial.organism.author.authorType | |
Element Id | SubstanceSourceMaterial.organism.author.authorType |
Definition | The type of author of an organism species shall be specified. The parenthetical author of an organism species refers to the first author who published the plant/animal name (of any rank). The primary author of an organism species refers to the first author(s), who validly published the plant/animal name. |
Short Display | The type of author of an organism species shall be specified. The parenthetical author of an organism species refers to the first author who published the plant/animal name (of any rank). The primary author of an organism species refers to the first author(s), who validly published the plant/animal name |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.author.authorDescription | |
Element Id | SubstanceSourceMaterial.organism.author.authorDescription |
Definition | The author of an organism species shall be specified. The author year of an organism shall also be specified when applicable; refers to the year in which the first author(s) published the infraspecific plant/animal name (of any rank). |
Short Display | The author of an organism species shall be specified. The author year of an organism shall also be specified when applicable; refers to the year in which the first author(s) published the infraspecific plant/animal name (of any rank) |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.organism.hybrid | |
Element Id | SubstanceSourceMaterial.organism.hybrid |
Definition | 4.9.13.8.1 Hybrid species maternal organism ID (Optional). |
Short Display | 4.9.13.8.1 Hybrid species maternal organism ID (Optional) |
Cardinality | 0..1 |
Summary | true |
SubstanceSourceMaterial.organism.hybrid.maternalOrganismId | |
Element Id | SubstanceSourceMaterial.organism.hybrid.maternalOrganismId |
Definition | The identifier of the maternal species constituting the hybrid organism shall be specified based on a controlled vocabulary. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal. |
Short Display | The identifier of the maternal species constituting the hybrid organism shall be specified based on a controlled vocabulary. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.organism.hybrid.maternalOrganismName | |
Element Id | SubstanceSourceMaterial.organism.hybrid.maternalOrganismName |
Definition | The name of the maternal species constituting the hybrid organism shall be specified. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal. |
Short Display | The name of the maternal species constituting the hybrid organism shall be specified. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.organism.hybrid.paternalOrganismId | |
Element Id | SubstanceSourceMaterial.organism.hybrid.paternalOrganismId |
Definition | The identifier of the paternal species constituting the hybrid organism shall be specified based on a controlled vocabulary. |
Short Display | The identifier of the paternal species constituting the hybrid organism shall be specified based on a controlled vocabulary |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.organism.hybrid.paternalOrganismName | |
Element Id | SubstanceSourceMaterial.organism.hybrid.paternalOrganismName |
Definition | The name of the paternal species constituting the hybrid organism shall be specified. |
Short Display | The name of the paternal species constituting the hybrid organism shall be specified |
Cardinality | 0..1 |
Type | string |
Summary | true |
SubstanceSourceMaterial.organism.hybrid.hybridType | |
Element Id | SubstanceSourceMaterial.organism.hybrid.hybridType |
Definition | The hybrid type of an organism shall be specified. |
Short Display | The hybrid type of an organism shall be specified |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.organismGeneral | |
Element Id | SubstanceSourceMaterial.organism.organismGeneral |
Definition | 4.9.13.7.1 Kingdom (Conditional). |
Short Display | 4.9.13.7.1 Kingdom (Conditional) |
Cardinality | 0..1 |
Summary | true |
SubstanceSourceMaterial.organism.organismGeneral.kingdom | |
Element Id | SubstanceSourceMaterial.organism.organismGeneral.kingdom |
Definition | The kingdom of an organism shall be specified. |
Short Display | The kingdom of an organism shall be specified |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.organismGeneral.phylum | |
Element Id | SubstanceSourceMaterial.organism.organismGeneral.phylum |
Definition | The phylum of an organism shall be specified. |
Short Display | The phylum of an organism shall be specified |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.organismGeneral.class | |
Element Id | SubstanceSourceMaterial.organism.organismGeneral.class |
Definition | The class of an organism shall be specified. |
Short Display | The class of an organism shall be specified |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.organism.organismGeneral.order | |
Element Id | SubstanceSourceMaterial.organism.organismGeneral.order |
Definition | The order of an organism shall be specified,. |
Short Display | The order of an organism shall be specified, |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.partDescription | |
Element Id | SubstanceSourceMaterial.partDescription |
Definition | To do. |
Short Display | To do |
Cardinality | 0..* |
Summary | true |
SubstanceSourceMaterial.partDescription.part | |
Element Id | SubstanceSourceMaterial.partDescription.part |
Definition | Entity of anatomical origin of source material within an organism. |
Short Display | Entity of anatomical origin of source material within an organism |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |
SubstanceSourceMaterial.partDescription.partLocation | |
Element Id | SubstanceSourceMaterial.partDescription.partLocation |
Definition | The detailed anatomic location when the part can be extracted from different anatomical locations of the organism. Multiple alternative locations may apply. |
Short Display | The detailed anatomic location when the part can be extracted from different anatomical locations of the organism. Multiple alternative locations may apply |
Cardinality | 0..1 |
Type | CodeableConcept |
Summary | true |