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| Responsible Owner: Biomedical Research and Regulation Work Group | Standards Status: Informative | Compartments: No defined compartments |
Raw XML (canonical form + also see XML Format Specification)
Nucleic acid substance: Mipomersen sodium — antisense oligonucleotide targeting APOB-100 (id = "mipomersen")
<?xml version="1.0" encoding="UTF-8"?> <!-- Example transcribed/adapted from ISO 11238 Implementation Guide §D.5.2.1 (Table D.1 — Mipomersen sodium). Demonstrates the new SubstanceDefinition nucleic-acid backbones added for FHIR-57660. Sequence chemistry is the published Mipomersen 20-mer antisense oligonucleotide; identifiers are illustrative. --><SubstanceDefinition xmlns="http://hl7.org/fhir"> <id value="mipomersen"/> <identifier> <system value="http://example.europa.eu/fhir/SMSId"/> <value value="MIPO78654S"/> </identifier> <status> <coding> <system value="http://hl7.org/fhir/publication-status"/> <code value="active"/> </coding> </status> <classification> <coding> <system value="http://example.europa.eu/fhir/SubstanceType"/> <code value="nucleic-acid"/> <display value="Nucleic Acid"/> </coding> </classification> <domain> <coding> <system value="http://example.europa.eu/fhir/Domain"/> <code value="human"/> <display value="Human use"/> </coding> </domain> <description value="Mipomersen sodium — a synthetic second-generation 2'-methoxyethyl antisense oligonucleotide that inhibits the molecular target apolipoprotein B-100 (APOB-100). 20-mer phosphorothioate-l inked sequence with 2'-MOE wing chemistry."/> <code> <code> <coding> <system value="http://example.europa.eu/fhir/Substance"/> <code value="MIPO78654S"/> </coding> </code> </code> <name> <name value="Mipomersen Sodium"/> <preferred value="true"/> <language> <coding> <system value="urn:ietf:bcp:47"/> <code value="en"/> <display value="English"/> </coding> </language> <official> <authority> <coding> <system value="http://hl7.org/fhir/substance-name-authority"/> <code value="INN"/> <display value="INN"/> </coding> </authority> <status> <coding> <system value="http://hl7.org/fhir/publication-status"/> <code value="active"/> <display value="Active"/> </coding> </status> </official> </name> <nucleicAcid> <sequenceType> <coding> <system value="http://hl7.org/fhir/substance-sequence-type"/> <code value="complete"/> <display value="Complete"/> </coding> </sequenceType> <numberOfSubunits value="1"/> <oligoNucleotideType> <coding> <system value="http://hl7.org/fhir/oligo-nucleotide-type"/> <code value="antisense"/> <display value="Antisense oligonucleotide"/> </coding> </oligoNucleotideType> <subunit> <subunit value="1"/> <sequence value="GCCUCAGTCTGCTTCGCACC"/> <length value="20"/> <fivePrime> <coding> <system value="http://hl7.org/fhir/nucleotide-terminus"/> <code value="G"/> <display value="Guanosine"/> </coding> </fivePrime> <threePrime> <coding> <system value="http://hl7.org/fhir/nucleotide-terminus"/> <code value="C"/> <display value="Cytidine"/> </coding> </threePrime> <linkage> <connectivity/> <substance> <concept> <coding> <system value="http://example.europa.eu/fhir/LinkageSubstance"/> <code value="phosphorothioate"/> <display value="Phosphorothioate linkage"/> </coding> </concept> </substance> <residueSite value="1-19"/> </linkage> <sugar> <substance> <concept> <coding> <system value="http://example.europa.eu/fhir/SugarSubstance"/> <code value="2-MOE"/> <display value="2'-O-(2-methoxyethyl) ribose"/> </coding> </concept> </substance> <residueSite value="1-5,16-20"/> </sugar> <sugar> <substance> <concept> <coding> <system value="http://example.europa.eu/fhir/SugarSubstance"/> <code value="deoxyribose"/> <display value="2'-deoxyribose"/> </coding> </concept> </substance> <residueSite value="6-15"/> </sugar> </subunit> <gene> <sequenceOrigin> <coding> <system value="http://hl7.org/fhir/gene-sequence-origin"/> <code value="human"/> <display value="Human"/> </coding> </sequenceOrigin> <gene> <concept> <coding> <system value="http://www.genenames.org"/> <code value="APOB"/> <display value="apolipoprotein B"/> </coding> </concept> </gene> </gene> </nucleicAcid> <relationship> <substanceDefinitionCodeableConcept> <coding> <system value="https://www.uniprot.org"/> <code value="P04114"/> <display value="apolipoprotein B-100"/> </coding> </substanceDefinitionCodeableConcept> <type> <coding> <system value="http://hl7.org/fhir/substance-relationship-type"/> <code value="TherapeuticTarget"/> <display value="Therapeutic target"/> </coding> </type> <interaction> <coding> <system value="http://hl7.org/fhir/substance-interaction-type"/> <code value="inhibition"/> <display value="Inhibition"/> </coding> </interaction> </relationship> </SubstanceDefinition>
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
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