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Specimen-example-isolate.json

Orders and Observations Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Patient, Practitioner

Raw JSON (canonical form + also see JSON Format Specification)

Bacterial Isolate from Stool sample

{
  "resourceType": "Specimen",
  "id": "isolate",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>accessionIdentifier</b>: id: X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: <span>Bacterial isolate specimen</span></p><p><b>subject</b>: <a>Generated Summary: Medical record number: 12345 (USUAL); active: true; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; deceased: false</a></p><p><b>receivedTime</b>: Aug 18, 2015 7:03:00 AM</p><p><b>parent</b>: <a> </a></p><blockquote><p><b>accessionIdentifier</b>: id: X352356</p><p><b>status</b>: unavailable</p><p><b>type</b>: <span>Stool specimen</span></p><p><b>subject</b>: <a>Generated Summary: Medical record number: 12345 (USUAL); active: true; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; deceased: false</a></p><p><b>receivedTime</b>: Aug 16, 2015 7:03:00 AM</p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><span>Patient</span></td><td>Aug 16, 2011 6:15:00 AM</td><td><span>Line, Venous</span></td></tr></table></blockquote><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a>Generated Summary: UZI-nummer: 12345678902 (OFFICIAL), BIG-nummer: 12345678902 (OFFICIAL); active: true; Luigi Maas(OFFICIAL); Phone: +31715269111; gender: male; birthDate: 1960-06-12</a></td><td>Aug 16, 2015 7:03:00 AM</td><td><span>Plates, Blood Agar</span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>"
  },
  "contained": [
    {
      "resourceType": "Specimen",
      "id": "stool",
      "accessionIdentifier": {
        "system": "http://lab.acme.org/specimens/2015",
        "value": "X352356"
      },
      "status": "unavailable",
      "type": {
        "coding": [
          {
            "system": "http://snomed.info/sct",
            "code": "119339001",
            "display": "Stool specimen"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "receivedTime": "2015-08-16T07:03:00Z",
      "collection": {
        "collector": {
          "display": "Patient"
        },
        "collectedDateTime": "2011-08-16T06:15:00Z",
        "method": {
          "coding": [
            {
              "system": "http://terminology.hl7.org/CodeSystem/v2-0488",
              "code": "LNV"
            }
          ]
        }
      }
    }
  ],
  "accessionIdentifier": {
    "system": "http://lab.acme.org/specimens/2011",
    "value": "X352356-ISO1"
  },
  "status": "available",
  "type": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "429951000124103",
        "display": "Bacterial isolate specimen"
      }
    ]
  },
  "subject": {
    "reference": "Patient/example"
  },
  "receivedTime": "2015-08-18T07:03:00Z",
  "parent": [
    {
      "reference": "#stool"
    }
  ],
  "collection": {
    "collector": {
      "reference": "Practitioner/f202"
    },
    "collectedDateTime": "2015-08-16T07:03:00Z",
    "method": {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0488",
          "code": "BAP"
        }
      ]
    }
  },
  "note": [
    {
      "text": "Patient dropped off specimen"
    }
  ]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.