Release 5 Preview #2

Provenance-example-cwl.ttl

Security Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Patient, Practitioner, RelatedPerson

Raw Turtle (+ also see Turtle/RDF Format Specification)

Provenance example for cwl workflow project

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Provenance/example-cwl> a fhir:Provenance;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-cwl"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n			<p>\n				<b>Generated Narrative with Details</b>\n			</p><p>\n				<b>id</b>: cwl-example</p><p>\n				<b>target</b>: <a href=\"http://build.fhir.org/sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n			</p><p>\n				<b>period</b>: Nov 30, 2016 --&gt; (ongoing)</p><p>\n				<b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n				<b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n         [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n         high throughput sequencing data.')</p>\n			<h3>Agents</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Who</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n             stated as 'null')</td>\n					<td>\n						<a href=\"http://build.fhir.org/patient-example.html\">Patient/example</a>\n					</td>\n				</tr>\n			</table>\n			<h3>Entities</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Reference</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>source</td>\n					<td>\n						<a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n					</td>\n				</tr>\n			</table>\n		</div>"
  ];
  fhir:Provenance.target [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/MolecularSequence/example-pgx-1>;
     fhir:Reference.reference [ fhir:value "MolecularSequence/example-pgx-1" ]
  ];
  fhir:Provenance.occurredPeriod [
     fhir:Period.start [ fhir:value "2016-11-30"^^xsd:date ]
  ];
  fhir:Provenance.recorded [ fhir:value "2016-12-01T08:12:14+10:00"^^xsd:dateTime];
  fhir:Provenance.reason [
     fhir:index 0;
     fhir:CodeableConcept.text [ fhir:value "profiling Short Tandem Repeats (STRs) from high throughput sequencing data." ]
  ];
  fhir:Provenance.agent [
     fhir:index 0;
     fhir:Provenance.agent.type [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ];
         fhir:Coding.code [ fhir:value "AUT" ]
       ]
     ];
     fhir:Provenance.agent.who [
       fhir:link <http://hl7.org/fhir/Patient/example>;
       fhir:Reference.reference [ fhir:value "Patient/example" ]
     ]
  ];
  fhir:Provenance.entity [
     fhir:index 0;
     fhir:Provenance.entity.role [ fhir:value "source" ];
     fhir:Provenance.entity.what [
       fhir:Reference.identifier [
         fhir:Identifier.type [
           fhir:CodeableConcept.coding [
             fhir:index 0;
             fhir:Coding.system [ fhir:value "https://github.com/common-workflow-language/workflows" ];
             fhir:Coding.code [ fhir:value "CWL" ];
             fhir:Coding.display [ fhir:value "lobSTR" ]
           ]
         ];
         fhir:Identifier.value [ fhir:value "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl" ]
       ]
     ]
  ] .

<http://hl7.org/fhir/MolecularSequence/example-pgx-1> a fhir:MolecularSequence .

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Provenance/example-cwl.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Provenance/example-cwl.ttl> .

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.