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Example Provenance/example-cwl (JSON)

Security Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Patient, Practitioner, RelatedPerson

Raw JSON (canonical form + also see JSON Format Specification)

MolecularSequence for CWL workflow project

{
  "resourceType" : "Provenance",
  "id" : "example-cwl",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n\t\t\t<p>\n\t\t\t\t<b>Generated Narrative with Details</b>\n\t\t\t</p><p>\n\t\t\t\t<b>id</b>: cwl-example</p><p>\n\t\t\t\t<b>target</b>: <a href=\"sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n\t\t\t</p><p>\n\t\t\t\t<b>period</b>: Nov 30, 2016 --&gt; (ongoing)</p><p>\n\t\t\t\t<b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n\t\t\t\t<b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n         [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n         high throughput sequencing data.')</p>\n\t\t\t<h3>Agents</h3>\n\t\t\t<table>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>-</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Role</b>\n\t\t\t\t\t</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Who</b>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>*</td>\n\t\t\t\t\t<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n             stated as 'null')</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<a href=\"patient-example.html\">Patient/example</a>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t</table>\n\t\t\t<h3>Entities</h3>\n\t\t\t<table>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>-</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Role</b>\n\t\t\t\t\t</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Reference</b>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>*</td>\n\t\t\t\t\t<td>source</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t</table>\n\t\t</div>"
  },
  "target" : [{
    "reference" : "MolecularSequence/example-pgx-1/_history/1"
  }],
  "occurredPeriod" : {
    "start" : "2016-11-30"
  },
  "recorded" : "2016-12-01T08:12:14+10:00",
  "activity" : {
    "coding" : [{
      "system" : "http://terminology.hl7.org/CodeSystem/v3-DataOperation",
      "code" : "CREATE",
      "display" : "create"
    }],
    "text" : "profiling Short Tandem Repeats (STRs) from high throughput sequencing data."
  },
  "agent" : [{
    "type" : {
      "coding" : [{
        "system" : "http://terminology.hl7.org/CodeSystem/v3-ParticipationType",
        "code" : "AUT"
      }]
    },
    "who" : {
      "reference" : "Patient/example"
    }
  }],
  "entity" : [{
    "role" : "source",
    "what" : {
      "identifier" : {
        "type" : {
          "coding" : [{
            "system" : "https://github.com/common-workflow-language/workflows",
            "code" : "CWL",
            "display" : "lobSTR"
          }]
        },
        "value" : "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl"
      }
    }
  }]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.