Gravitate Health FHIR Implementation Guide, published by Gravitate Health Project. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/gravitate-health/ and changes regularly. See the Directory of published versions
Draft as of 2024-06-12 |
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:Library ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "pregnancy-lens"] ; #
fhir:meta [
( fhir:profile [
fhir:v "http://hl7.eu/fhir/ig/gravitate-health/StructureDefinition/lens"^^xsd:anyURI ;
fhir:link <http://hl7.eu/fhir/ig/gravitate-health/StructureDefinition/lens> ] )
] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Library pregnancy-lens</b></p><a name=\"pregnancy-lens\"> </a><a name=\"hcpregnancy-lens\"> </a><a name=\"pregnancy-lens-en-US\"> </a><h2>Parameters</h2><table class=\"grid\"><tr><td/><td>in</td><td/><td/><td>CodeableConcept</td><td>parameter if it exists</td></tr></table><h2>Contents</h2><p>Lens for pregnancy: (<code>application/javascript</code>)</p><pre><code>let pvData = pv;\nlet htmlData = html;\n\nlet epiData = epi;\nlet ipsData = ips;\n\nlet getSpecification = () => {\n return "1.0.0";\n};\n\nlet annotationProcess = (listOfCategories, enhanceTag, document, response) => {\n listOfCategories.forEach((check) => {\n if (response.includes(check)) {\n let elements = document.getElementsByClassName(check);\n for (let i = 0; i < elements.length; i++) {\n elements[i].classList.add(enhanceTag);\n }\n if (document.getElementsByTagName("head").length > 0) {\n document.getElementsByTagName("head")[0].remove();\n }\n if (document.getElementsByTagName("body").length > 0) {\n response = document.getElementsByTagName("body")[0].innerHTML;\n console.log("Response: " + response);\n } else {\n console.log("Response: " + document.documentElement.innerHTML);\n response = document.documentElement.innerHTML;\n }\n }\n });\n\n if (response == null || response == "") {\n throw new Error(\n "Annotation proccess failed: Returned empty or null response"\n );\n //return htmlData\n } else {\n console.log("Response: " + response);\n return response;\n }\n}\n\nlet annotateHTMLsection = async (listOfCategories, enhanceTag) => {\n let response = htmlData;\n let document;\n\n if (typeof window === "undefined") {\n let jsdom = await import("jsdom");\n let { JSDOM } = jsdom;\n let dom = new JSDOM(htmlData);\n document = dom.window.document;\n return annotationProcess(listOfCategories, enhanceTag, document, response);\n } else {\n document = window.document;\n return annotationProcess(listOfCategories, enhanceTag, document, response);\n }\n};\n\nlet getIPSAge = (birthDate) => {\n let today = new Date();\n let birthDateParsed = new Date(birthDate);\n\n let ageMiliseconds = today - birthDateParsed;\n let age = Math.floor(ageMiliseconds / 31536000000);\n\n return age;\n}\n\nlet enhance = async () => {\n // pregnancyCategory breastfeedingCategory\n // SNOMED SNOMED\n let listOfCategoriesToSearch = ["W78", "77386006", "69840006"]; //"contra-indication-pregancy"]\n\n // Get IPS gender and check if is female\n let gender;\n\n let enhanceTag;\n\n if (ips == "" || ips == null) {\n throw new Error("Failed to load IPS: the LEE is getting a empty IPS");\n }\n ips.entry.forEach((element) => {\n if (element.resource.resourceType == "Patient") {\n gender = element.resource.gender;\n if (gender != "female" || getIPSAge(element.resource.birthDate) >= 75) {\n enhanceTag = "collapsed";\n } else {\n enhanceTag = "highlight";\n }\n }\n });\n\n // ePI traslation from terminology codes to their human redable translations in the sections\n let compositions = 0;\n let categories = [];\n epi.entry.forEach((entry) => {\n if (entry.resource.resourceType == "Composition") {\n compositions++;\n //Iterated through the Condition element searching for conditions\n entry.resource.extension.forEach((element) => {\n \n // Check if the position of the extension[1] is correct\n if (element.extension[1].url == "concept") {\n // Search through the different terminologies that may be avaible to check in the condition\n if (element.extension[1].valueCodeableReference.concept != undefined) {\n element.extension[1].valueCodeableReference.concept.coding.forEach(\n (coding) => {\n console.log("Extension: " + element.extension[0].valueString + ":" + coding.code)\n // Check if the code is in the list of categories to search\n if (listOfCategoriesToSearch.includes(coding.code)) {\n // Check if the category is already in the list of categories\n categories.push(element.extension[0].valueString);\n }\n }\n );\n }\n }\n });\n }\n });\n\n if (compositions == 0) {\n throw new Error('Bad ePI: no category "Composition" found');\n }\n\n if (categories.length == 0) {\n // throw new Error("No categories found", categories);\n return htmlData;\n }\n //Focus (adds highlight class) the html applying every category found\n return await annotateHTMLsection(categories, enhanceTag);\n};\n\nreturn {\n enhance: enhance,\n getSpecification: getSpecification,\n};\n</code></pre></div>"
] ; #
fhir:extension ( [
fhir:url [ fhir:v "http://hl7.eu/fhir/ig/gravitate-health/StructureDefinition/lee-version"^^xsd:anyURI ] ;
fhir:value [ fhir:v "dev" ]
] ) ; #
fhir:url [ fhir:v "http://hl7.eu/fhir/ig/gravitate-health/Library/mock-lib"^^xsd:anyURI] ; #
fhir:identifier ( [
fhir:system [ fhir:v "http://gravitate-health.lst.tfo.upm.es"^^xsd:anyURI ] ;
fhir:value [ fhir:v "pregnancy-lens" ]
] ) ; #
fhir:version [ fhir:v "0.1.0"] ; #
fhir:name [
fhir:v "pregnancy-lens" ;
( fhir:extension [
( fhir:extension [
fhir:url [ fhir:v "lang"^^xsd:anyURI ] ;
fhir:value [ fhir:v "es" ] ] [
fhir:url [ fhir:v "content"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Lente para el embarazo" ] ] ) ;
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/translation"^^xsd:anyURI ] ] )
] ; #
fhir:title [
fhir:v "pregnancy-lens" ;
( fhir:extension [
( fhir:extension [
fhir:url [ fhir:v "lang"^^xsd:anyURI ] ;
fhir:value [ fhir:v "es" ] ] [
fhir:url [ fhir:v "content"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Lente para el embarazo" ] ] ) ;
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/translation"^^xsd:anyURI ] ] )
] ; #
fhir:status [ fhir:v "draft"] ; #
fhir:experimental [ fhir:v "true"^^xsd:boolean] ; #
fhir:type [
( fhir:coding [
fhir:code [ fhir:v "logical-library" ] ] )
] ; #
fhir:date [ fhir:v "2024-06-12T12:23:10.005Z"^^xsd:dateTime] ; #
fhir:publisher [ fhir:v "Gravitate Health Project"] ; #
fhir:contact ( [
fhir:name [ fhir:v "Gravitate Health Project" ] ;
( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://www.gravitatehealth.eu/" ] ] )
] [
fhir:name [ fhir:v "Gravitate Health Project" ] ;
( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://www.gravitatehealth.eu/" ] ] )
] ) ; #
fhir:description [
fhir:v "Lens that highlight or collapses pregnancy related information" ;
( fhir:extension [
( fhir:extension [
fhir:url [ fhir:v "lang"^^xsd:anyURI ] ;
fhir:value [ fhir:v "es" ] ] [
fhir:url [ fhir:v "content"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Lente que resalta o colapsa la información relacionada con el embarazo" ] ] ) ;
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/translation"^^xsd:anyURI ] ] )
] ; #
fhir:purpose [
fhir:v "Collapse or highlight pregnancy related information on a preprocessed ePI." ;
( fhir:extension [
( fhir:extension [
fhir:url [ fhir:v "lang"^^xsd:anyURI ] ;
fhir:value [ fhir:v "es" ] ] [
fhir:url [ fhir:v "content"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Colapsar o resaltar la información relacionada con el embarazo en un ePI preprocesado." ] ] ) ;
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/translation"^^xsd:anyURI ] ] )
] ; #
fhir:usage [
fhir:v "You can import this lens directly to your FHIR Server which suports Library Resource type." ;
( fhir:extension [
( fhir:extension [
fhir:url [ fhir:v "lang"^^xsd:anyURI ] ;
fhir:value [ fhir:v "es" ] ] [
fhir:url [ fhir:v "content"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Puedes importar esta lente directamente a tu servidor FHIR que soporte el tipo de recurso Library." ] ] ) ;
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/translation"^^xsd:anyURI ] ] )
] ; #
fhir:copyright [ fhir:v "© 2024 Gravitate Health"] ; #
fhir:parameter ( [
fhir:use [ fhir:v "in" ] ;
fhir:documentation [ fhir:v "parameter if it exists" ] ;
fhir:type [ fhir:v "CodeableConcept" ]
] ) ; #
fhir:content ( [
fhir:contentType [ fhir:v "application/javascript" ] ;
fhir:data [ fhir:v "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] ;
fhir:title [
fhir:v "Lens for pregnancy" ;
( fhir:extension [
( fhir:extension [
fhir:url [ fhir:v "lang"^^xsd:anyURI ] ;
fhir:value [ fhir:v "es" ] ] [
fhir:url [ fhir:v "content"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Lente para el embarazo" ] ] ) ;
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/translation"^^xsd:anyURI ] ] ) ]
] ) . #
IG © 2021+ Gravitate Health Project. Package hl7.eu.fhir.gh#0.1.0 based on FHIR 5.0.0. Generated 2024-11-20
This joint undertaking receives support from the EU H2020 research and innovation programme and EFPIA.