Gravitate Health FHIR Implementation Guide
0.1.0 - CI Build

Gravitate Health FHIR Implementation Guide, published by Gravitate Health Project. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/gravitate-health/ and changes regularly. See the Directory of published versions

: pregnancy-lens - JSON Representation

Draft as of 2024-06-12

Raw json | Download

{
  "resourceType" : "Library",
  "id" : "pregnancy-lens",
  "meta" : {
    "profile" : [
      🔗 "http://hl7.eu/fhir/ig/gravitate-health/StructureDefinition/lens"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Library pregnancy-lens</b></p><a name=\"pregnancy-lens\"> </a><a name=\"hcpregnancy-lens\"> </a><a name=\"pregnancy-lens-en-US\"> </a><h2>Parameters</h2><table class=\"grid\"><tr><td/><td>in</td><td/><td/><td>CodeableConcept</td><td>parameter if it exists</td></tr></table><h2>Contents</h2><p>Lens for pregnancy: (<code>application/javascript</code>)</p><pre><code>let pvData = pv;\nlet htmlData = html;\n\nlet epiData = epi;\nlet ipsData = ips;\n\nlet getSpecification = () =&gt; {\n    return &quot;1.0.0&quot;;\n};\n\nlet annotationProcess = (listOfCategories, enhanceTag, document, response) =&gt; {\n    listOfCategories.forEach((check) =&gt; {\n        if (response.includes(check)) {\n            let elements = document.getElementsByClassName(check);\n            for (let i = 0; i &lt; elements.length; i++) {\n                elements[i].classList.add(enhanceTag);\n            }\n            if (document.getElementsByTagName(&quot;head&quot;).length &gt; 0) {\n                document.getElementsByTagName(&quot;head&quot;)[0].remove();\n            }\n            if (document.getElementsByTagName(&quot;body&quot;).length &gt; 0) {\n                response = document.getElementsByTagName(&quot;body&quot;)[0].innerHTML;\n                console.log(&quot;Response: &quot; + response);\n            } else {\n                console.log(&quot;Response: &quot; + document.documentElement.innerHTML);\n                response = document.documentElement.innerHTML;\n            }\n        }\n    });\n\n    if (response == null || response == &quot;&quot;) {\n        throw new Error(\n            &quot;Annotation proccess failed: Returned empty or null response&quot;\n        );\n        //return htmlData\n    } else {\n        console.log(&quot;Response: &quot; + response);\n        return response;\n    }\n}\n\nlet annotateHTMLsection = async (listOfCategories, enhanceTag) =&gt; {\n    let response = htmlData;\n    let document;\n\n    if (typeof window === &quot;undefined&quot;) {\n        let jsdom = await import(&quot;jsdom&quot;);\n        let { JSDOM } = jsdom;\n        let dom = new JSDOM(htmlData);\n        document = dom.window.document;\n        return annotationProcess(listOfCategories, enhanceTag, document, response);\n    } else {\n        document = window.document;\n        return annotationProcess(listOfCategories, enhanceTag, document, response);\n    }\n};\n\nlet getIPSAge = (birthDate) =&gt; {\n    let today = new Date();\n    let birthDateParsed = new Date(birthDate);\n\n    let ageMiliseconds = today - birthDateParsed;\n    let age = Math.floor(ageMiliseconds / 31536000000);\n\n    return age;\n}\n\nlet enhance = async () =&gt; {\n    //                  pregnancyCategory    breastfeedingCategory\n    //                             SNOMED    SNOMED\n    let listOfCategoriesToSearch = [&quot;W78&quot;, &quot;77386006&quot;, &quot;69840006&quot;]; //&quot;contra-indication-pregancy&quot;]\n\n    // Get IPS gender and check if is female\n    let gender;\n\n    let enhanceTag;\n\n    if (ips == &quot;&quot; || ips == null) {\n        throw new Error(&quot;Failed to load IPS: the LEE is getting a empty IPS&quot;);\n    }\n    ips.entry.forEach((element) =&gt; {\n        if (element.resource.resourceType == &quot;Patient&quot;) {\n            gender = element.resource.gender;\n            if (gender != &quot;female&quot; || getIPSAge(element.resource.birthDate) &gt;= 75) {\n                enhanceTag = &quot;collapsed&quot;;\n            } else {\n                enhanceTag = &quot;highlight&quot;;\n            }\n        }\n    });\n\n    // ePI traslation from terminology codes to their human redable translations in the sections\n    let compositions = 0;\n    let categories = [];\n    epi.entry.forEach((entry) =&gt; {\n        if (entry.resource.resourceType == &quot;Composition&quot;) {\n            compositions++;\n            //Iterated through the Condition element searching for conditions\n            entry.resource.extension.forEach((element) =&gt; {\n                \n                // Check if the position of the extension[1] is correct\n                if (element.extension[1].url == &quot;concept&quot;) {\n                    // Search through the different terminologies that may be avaible to check in the condition\n                    if (element.extension[1].valueCodeableReference.concept != undefined) {\n                        element.extension[1].valueCodeableReference.concept.coding.forEach(\n                            (coding) =&gt; {\n                                console.log(&quot;Extension: &quot; + element.extension[0].valueString + &quot;:&quot; + coding.code)\n                                // Check if the code is in the list of categories to search\n                                if (listOfCategoriesToSearch.includes(coding.code)) {\n                                    // Check if the category is already in the list of categories\n                                    categories.push(element.extension[0].valueString);\n                                }\n                            }\n                        );\n                    }\n                }\n            });\n        }\n    });\n\n    if (compositions == 0) {\n        throw new Error('Bad ePI: no category &quot;Composition&quot; found');\n    }\n\n    if (categories.length == 0) {\n        // throw new Error(&quot;No categories found&quot;, categories);\n        return htmlData;\n    }\n    //Focus (adds highlight class) the html applying every category found\n    return await annotateHTMLsection(categories, enhanceTag);\n};\n\nreturn {\n    enhance: enhance,\n    getSpecification: getSpecification,\n};\n</code></pre></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.eu/fhir/ig/gravitate-health/StructureDefinition/lee-version",
      "valueString" : "dev"
    }
  ],
  "url" : "http://hl7.eu/fhir/ig/gravitate-health/Library/mock-lib",
  "identifier" : [
    {
      "system" : "http://gravitate-health.lst.tfo.upm.es",
      "value" : "pregnancy-lens"
    }
  ],
  "version" : "0.1.0",
  "name" : "pregnancy-lens",
  "_name" : {
    "extension" : [
      {
        "extension" : [
          {
            "url" : "lang",
            "valueCode" : "es"
          },
          {
            "url" : "content",
            "valueString" : "Lente para el embarazo"
          }
        ],
        "url" : "http://hl7.org/fhir/StructureDefinition/translation"
      }
    ]
  },
  "title" : "pregnancy-lens",
  "_title" : {
    "extension" : [
      {
        "extension" : [
          {
            "url" : "lang",
            "valueCode" : "es"
          },
          {
            "url" : "content",
            "valueString" : "Lente para el embarazo"
          }
        ],
        "url" : "http://hl7.org/fhir/StructureDefinition/translation"
      }
    ]
  },
  "status" : "draft",
  "experimental" : true,
  "type" : {
    "coding" : [
      {
        "code" : "logical-library"
      }
    ]
  },
  "date" : "2024-06-12T12:23:10.005Z",
  "publisher" : "Gravitate Health Project",
  "contact" : [
    {
      "name" : "Gravitate Health Project",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.gravitatehealth.eu/"
        }
      ]
    },
    {
      "name" : "Gravitate Health Project",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.gravitatehealth.eu/"
        }
      ]
    }
  ],
  "description" : "Lens that highlight or collapses pregnancy related information",
  "_description" : {
    "extension" : [
      {
        "extension" : [
          {
            "url" : "lang",
            "valueCode" : "es"
          },
          {
            "url" : "content",
            "valueString" : "Lente que resalta o colapsa la información relacionada con el embarazo"
          }
        ],
        "url" : "http://hl7.org/fhir/StructureDefinition/translation"
      }
    ]
  },
  "purpose" : "Collapse or highlight pregnancy related information on a preprocessed ePI.",
  "_purpose" : {
    "extension" : [
      {
        "extension" : [
          {
            "url" : "lang",
            "valueCode" : "es"
          },
          {
            "url" : "content",
            "valueString" : "Colapsar o resaltar la información relacionada con el embarazo en un ePI preprocesado."
          }
        ],
        "url" : "http://hl7.org/fhir/StructureDefinition/translation"
      }
    ]
  },
  "usage" : "You can import this lens directly to your FHIR Server which suports Library Resource type.",
  "_usage" : {
    "extension" : [
      {
        "extension" : [
          {
            "url" : "lang",
            "valueCode" : "es"
          },
          {
            "url" : "content",
            "valueString" : "Puedes importar esta lente directamente a tu servidor FHIR que soporte el tipo de recurso Library."
          }
        ],
        "url" : "http://hl7.org/fhir/StructureDefinition/translation"
      }
    ]
  },
  "copyright" : "© 2024 Gravitate Health",
  "parameter" : [
    {
      "use" : "in",
      "documentation" : "parameter if it exists",
      "type" : "CodeableConcept"
    }
  ],
  "content" : [
    {
      "contentType" : "application/javascript",
      "data" : 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",
      "title" : "Lens for pregnancy",
      "_title" : {
        "extension" : [
          {
            "extension" : [
              {
                "url" : "lang",
                "valueCode" : "es"
              },
              {
                "url" : "content",
                "valueString" : "Lente para el embarazo"
              }
            ],
            "url" : "http://hl7.org/fhir/StructureDefinition/translation"
          }
        ]
      }
    }
  ]
}