Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: genomicFileFatherBAM - TTL Representation

Raw ttl | Download

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/DocumentReference/genomicFileFatherBAM> a fhir:DocumentReference ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "genomicFileFatherBAM"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file" ;
       fhir:index 0 ;
       fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: DocumentReference genomicFileFatherBAM</b></p><a name=\"genomicFileFatherBAM\"> </a><a name=\"hcgenomicFileFatherBAM\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-data-file.html\">Genomic Data File</a></p></div><p><b>identifier</b>: <code>http://example.org/identifiers/files</code>/11132</p><p><b>status</b>: Current</p><p><b>docStatus</b>: Preliminary</p><p><b>subject</b>: <a href=\"Patient-denovoFather.html\">Father Denovo (official) (no stated gender), DoB Unknown ( Medical record number: 6789-11111 (use: temp, ))</a></p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v3-Confidentiality R}\">Restricted</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style=\"display: none\">*</td><td><a href=\"http://example.org/identifiers/files/11132\">http://example.org/identifiers/files/11132</a></td><td>Fathers BAM file</td></tr></table></blockquote></div>"
  ] ;
  fhir:DocumentReference.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "http://example.org/identifiers/files" ] ;
     fhir:Identifier.value [ fhir:value "11132" ]
  ] ;
  fhir:DocumentReference.status [ fhir:value "current"] ;
  fhir:DocumentReference.docStatus [ fhir:value "preliminary"] ;
  fhir:DocumentReference.subject [
     fhir:link <http://hl7.org/fhir/Patient/denovoFather> ;
     fhir:Reference.reference [ fhir:value "Patient/denovoFather" ]
  ] ;
  fhir:DocumentReference.description [ fhir:value "A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline."] ;
  fhir:DocumentReference.securityLabel [
     fhir:index 0 ;
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-Confidentiality" ] ;
       fhir:Coding.code [ fhir:value "R" ] ;
       fhir:Coding.display [ fhir:value "Restricted" ]
     ]
  ] ;
  fhir:DocumentReference.content [
     fhir:index 0 ;
     fhir:DocumentReference.content.attachment [
       fhir:Attachment.url [ fhir:value "http://example.org/identifiers/files/11132" ] ;
       fhir:Attachment.title [ fhir:value "Fathers BAM file" ]
     ]
  ] .

<http://hl7.org/fhir/Patient/denovoFather> a fhir:Patient .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/DocumentReference/genomicFileFatherBAM.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/DocumentReference/genomicFileFatherBAM.ttl> .