Validation Results for GenomicsReporting

Generated Mon Sep 21 13:34:41 UTC 2026, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#4.0.0-cibuild (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Errors Only & IP

Quality Checks

Publisher Version:

IG Publisher Version: v2.3.4

Publication Code:

genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting

Realm Check for UV:

Language Info:

This IG has no language information

Publication Request:

package-id

hl7.fhir.uv.genomics-reporting

version

4.0.0-cibuild

path

http://hl7.org/fhir/uv/genomics-reporting/STU4-snapshot

Pub-Mode

working release

status

ballot

Release-Label

CI Build

Sequence (Group)

STU4 (current: 'STU3', others = 'STU 1','STU 2','STU 3')

desc

CI Build - STU 4.0.0 Development (FHIR R4)

descmd

CI Build - STU 4.0.0 Development (FHIR R4).

RelatedIgs

(None Found)

No Messages found - all good

Supressed Messages:

80 Suppressed Issues

Dependency Checks:

Package	Version	FHIR	Canonical	Web Base	Comment
hl7.fhir.uv.genomics-reporting	4.0.0-cibuild	R4	http://hl7.org/fhir/uv/genomics-reporting
hl7.terminology.r4	7.3.0 M	R4	http://terminology.hl7.org	http://terminology.hl7.org/7.3.0
hl7.fhir.uv.extensions.r4	5.3.0 M	R4	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.3.0
hl7.terminology.r4	7.1.0 O	R4	http://terminology.hl7.org	http://terminology.hl7.org/7.1.0	Latest Release is 7.3.0
hl7.fhir.uv.extensions.r4	5.2.0 O	R4	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.2.0	Latest Release is 5.3.0
hl7.fhir.uv.extensions.r4	5.3.0 M	R4	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.3.0	(as above)
hl7.fhir.uv.tools.r4	1.1.2 O	R4	http://hl7.org/fhir/tools	http://hl7.org/fhir/tools/1.1.2	Internal Dependency. Latest Release is 1.2.0

Templates: hl7.fhir.template#1.0.0 -> hl7.base.template#1.0.0 -> fhir.base.template#1.0.0

Related IGs:

n/a

Dependent IGs:

no references

Global Profiles:

(none declared)

Terminology Server(s):

http://tx.fhir.org/r4, https://tx-nordics.fhir.org/fhir/r4, https://tx.fhir.org/r4 (details)

HTA Analysis:

All OK

R5 Dependencies:

(none)

Draft Dependencies:

hl7.fhir.r4.core#4.0.1: GuideParameterCode (15 uses), EventStatus (3 uses), EventStatus (1 uses), Practitioner (34 uses), RelatedPerson (24 uses), Organization (29 uses), CommonLanguages (18 uses), CarePlan (16 uses), DeviceRequest (12 uses), ImmunizationRecommendation (13 uses), MedicationRequest (13 uses), NutritionOrder (13 uses), ServiceRequest (16 uses), MedicationAdministration (15 uses), MedicationDispense (13 uses), MedicationStatement (15 uses), Procedure (20 uses), Immunization (13 uses), ImagingStudy (26 uses), ObservationCategoryCodes (37 uses), LOINCCodes (115 uses), Group (18 uses), Device (40 uses), Location (17 uses), Encounter (18 uses), PractitionerRole (32 uses), CareTeam (16 uses), SNOMEDCTBodyStructures (14 uses), ObservationMethods (9 uses), Specimen (17 uses), DeviceMetric (12 uses), ObservationReferenceRangeMeaningCodes (12 uses), ObservationReferenceRangeAppliesToCodes (12 uses), QuestionnaireResponse (24 uses), MolecularSequence (28 uses), DocumentReference (17 uses), Media (13 uses), Task (8 uses), ActivityDefinition (4 uses), TaskStatus (2 uses), TaskIntent (2 uses), RequestPriority (2 uses), ProcedurePerformerRoleCodes (4 uses), HealthcareService (2 uses), Coverage (2 uses), ClaimResponse (2 uses), Provenance (2 uses), DocumentReferenceStatus (1 uses), CompositionStatus (1 uses), DocumentRelationshipType (1 uses), EpisodeOfCare (1 uses), DiagnosticReport (4 uses), DiagnosticReportStatus (1 uses), DiagnosticServiceSectionCodes (2 uses), LOINCDiagnosticReportCodes (1 uses), SNOMEDCTClinicalFindings (1 uses), RiskAssessment (2 uses), PlanDefinition (6 uses), ProcedureCategoryCodes(SNOMEDCT) (2 uses), ProcedureCodes(SNOMEDCT) (1 uses), ProcedureReasonCodes (2 uses), Condition (5 uses), ProcedureOutcomeCodes(SNOMEDCT) (2 uses), Composition (2 uses), Condition/Problem/DiagnosisCodes (2 uses), ProcedureFollowUpCodes(SNOMEDCT) (2 uses), ProcedureDeviceActionCodes (2 uses), Medication (4 uses), Substance (2 uses), FHIRDeviceTypes (2 uses), MedicationKnowledge (2 uses), ResearchStudy (2 uses)

Modifier Extensions:

(none)

Previous Version Comparison:

Comparison with version 3.0.0

IPA Comparison:

n/a

IPS Comparison:

n/a

Validation Flags:

On: autoLoad; Off: hintAboutNonMustSupport, anyExtensionsAllowed, checkAggregation, showReferenceMessages, noExperimentalContent, displayWarnings

Summary:

errors = 34, warn = 10, info = 80, broken links = 88, pinned = 48 (when multiples).

Filename	Errors	Warnings	Hints
Build Errors	88	1	10
/scratch/repo/fsh-generated/includes/fsh-link-references	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-CYP2C19	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample-withGrouping	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-compound-heterozygote	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-diagnostic	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-report-example	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-pgxexample	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-coded-annotation-types-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-change-type-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-data-format-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-method-type-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-status-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-type-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-knowledge-base-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-tbd-codes-cs	1	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-variant-confidence-status-cs	1	0	0
/scratch/repo/fsh-generated/resources/ConceptMap-GenomicStudyStatusMap	0	0	1
/scratch/repo/fsh-generated/resources/ConceptMap-dna-change-type-map	0	0	1
/scratch/repo/fsh-generated/resources/Device-triodenovo-software	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-GenomicReportExample01	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE	0	1	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping	0	1	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-diagnosticreport-hla-glstring-r4	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-somaticReport	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-CNVAnalysis-called	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-FullGenome-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-SimpleVariantAnalysis-called	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-UncallableRegions	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-WES-FullSequencedRegion-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-WES-UncallableRegions-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileFatherBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileMotherBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandVCF	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-cnv	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-simple	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-somaticVCFfile	0	0	0
/scratch/repo/fsh-generated/resources/ImplementationGuide-genomics-reporting	0	0	1
/scratch/repo/fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-molc	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-AnnotationExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-molc	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineCNV	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineDEL	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineINV	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticCNV	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticDEL	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticINV	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExamplePharmVar	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx02	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx03	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmuneStainExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmunoassayExample	1	0	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar02	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLImplication	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-NormalExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-molc	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MSIExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MicrosatelliteInstabilityExample01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MultipleRepeatExpansions	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-molc	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-molc	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-PDL1Example	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1001	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1002	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1003	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1011	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1012	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1013	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1014	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1015	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1016	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1017	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1018	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1019	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1020	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1021	0	0	0
/scratch/repo/fsh-generated/resources/Observation-PolyGenicDiagnosticImpExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuDrug	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-RepeatExpansion	0	0	0
/scratch/repo/fsh-generated/resources/Observation-SNVexample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-molc	0	0	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-SequencePhaseRelationExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TMB-therapuDrug	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TMBExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TherapeuticImplicationExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TumorMutationBurdenExample01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp02	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp03	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp04	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp05	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp06	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial	0	0	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-molc	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-var	0	0	0
/scratch/repo/fsh-generated/resources/Observation-diagnosticImplication-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-genotype-hla-a-glstring-r4	0	0	0
/scratch/repo/fsh-generated/resources/Observation-haplotype-hla-a-1-r4	0	0	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq3	0	0	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq4	0	0	0
/scratch/repo/fsh-generated/resources/Observation-obs-idh-ex	0	0	0
/scratch/repo/fsh-generated/resources/Observation-obs1-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-obs2-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-pop-allele-freq	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug1-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug2-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug3-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-variant-with-molec-consequences	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-dx-implications	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-molecular-consequences	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-haplotypes	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-variants	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-structural-intersecting-variants	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-structural-subsuming-variants	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-tx-implications	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-study-metadata	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-dx-implications	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-haplotypes	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-molecular-consequences	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-specific-haplotypes	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-specific-variants	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-structural-intersecting-variants	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-structural-subsuming-variants	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-tx-implications	0	0	1
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-variants	0	0	1
/scratch/repo/fsh-generated/resources/Organization-ExampleLab	0	0	0
/scratch/repo/fsh-generated/resources/Organization-ExampleOrg	0	0	0
/scratch/repo/fsh-generated/resources/Organization-performingOrganization	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindALLPopulationSpecificVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindANYPopulationSpecificVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationDxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationMolecConseqOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationSpecificHaplotypesOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralIntersectingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralSubsumingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationTxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindStudyMetadataOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Patient-CGPatientExample01	0	0	0
/scratch/repo/fsh-generated/resources/Patient-ExamplePatient	0	0	0
/scratch/repo/fsh-generated/resources/Patient-HG00403	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoChild	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoFather	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoMother	0	0	0
/scratch/repo/fsh-generated/resources/Patient-genomicPatient	0	0	0
/scratch/repo/fsh-generated/resources/Patient-somaticPatient	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-orderingPractitioner	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-pathologistPractitioner	0	0	0
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n/a Show Validation Information

warning

The jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content)

CodeSystem-knowledge-base-cs.html

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The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: ' This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full. ' CONFORMANCE_STATEMENT_WORD

StructureDefinition-coded-annotation.html

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The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'If there is a possibility of transporting the content of the note in a structured manner the usage of CodedAnnotation is forbidden and the corresponding data structures SHALL be used. For example, if the text to send resembles the interpretation or impression of the Observation, this guide adds Observation.component slice for conclusion-string which is more appropriate than a note. This would include text like interpretative information (typically canned) about a variant identified in the patient. This slice is defined in the Genomic Base profile, which every observation builds upon. Therefore, this component is a defined slice on all observations profiles defined in this Implementation Guide.' CONFORMANCE_STATEMENT_WORD

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StructureDefinition-genotype.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes, and for genotypes (diplotypes) MAY use a simple, human readable grammar of:' CONFORMANCE_STATEMENT_WORD

StructureDefinition-haplotype.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes. Here is an example using PharmVar:' CONFORMANCE_STATEMENT_WORD

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StructureDefinition-implication.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'Where implications have fields with cardinality > 1, the inclusion of multiple values within a field SHALL indicate an 'AND' condition. An 'OR' condition SHALL be represented by multiple observation instances.' CONFORMANCE_STATEMENT_WORD

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StructureDefinition-therapeutic-implication.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'There are two ways to communicate details about a medication whose implication is being described. The profile component medication-assessed is the place to communicate a simple code for the medication. If more detail about the medication is to be shared, use the extension named medication-assessed-reference. The extension can refer to a Medication or MedicationKnowledge resource. This might be used to share specific classification details if they are important as part of the implication being described. It is important to note that since there two ways to do this, implementers SHALL ensure consistent usage. If both the extension and component are used at the same time, they SHALL deliver the same medication. Because this is an international profile, no guidance is provided on drug coding systems.' CONFORMANCE_STATEMENT_WORD

artifacts.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full.' CONFORMANCE_STATEMENT_WORD

general.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'The GenomicStudy instance SHOULD be referenced from a report and CAN be referenced by various observations.' CONFORMANCE_STATEMENT_WORD

pharmacogenomics.html

information

The html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'Genotype names such as star-alleles can appear in PGx reports either with or without a full description of the underlying coded haplotypes and observed variants. Genotype names MAY be coded, but will oftentimes be textual descriptions only. PGx guidance is often available at the level of these genotypes.' CONFORMANCE_STATEMENT_WORD

sequencing.html

information

The html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'For each variant reporting pattern, different components MUST be used to properly define the variant where possible. Other components MAY be used to provide additional information for cross referencing external sources or increasing human readability of the instance.' CONFORMANCE_STATEMENT_WORD

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fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json Show Validation Information (86)

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fsh-generated/resources/Bundle-bundle-CYP2C19.json Show Validation Information (755)

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fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs.json Show Validation Information (1)

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fsh-generated/resources/CodeSystem-genomic-study-change-type-cs.json Show Validation Information (1)

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fsh-generated/resources/CodeSystem-genomic-study-method-type-cs.json Show Validation Information (1)

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fsh-generated/resources/CodeSystem-genomic-study-status-cs.json Show Validation Information (1)

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Severity

Message

Validating

Resource

error

The resource CodeSystem/genomic-study-status-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/CodeSystem-genomic-study-type-cs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource CodeSystem/genomic-study-type-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/CodeSystem-knowledge-base-cs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource CodeSystem/knowledge-base-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource CodeSystem/molecular-biomarker-ontology-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource CodeSystem/pharmgkb-evidence-level-custom-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource CodeSystem/sequence-phase-relationship-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/CodeSystem-tbd-codes-cs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource CodeSystem/tbd-codes-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/CodeSystem-variant-confidence-status-cs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource CodeSystem/variant-confidence-status-cs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ConceptMap-GenomicStudyStatusMap.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource ConceptMap/GenomicStudyStatusMap could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ConceptMap-dna-change-type-map.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource ConceptMap/dna-change-type-map could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/Device-triodenovo-software.json Show Validation Information (1)

✓

fsh-generated/resources/DiagnosticReport-GenomicReportExample01.json Show Validation Information (1)

✓

fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE.json Show Validation Information (1)

Path

Severity

Message

Validating

DiagnosticReport.code.coding[1].system (l9/c4)

warning

A definition for the code system 'http://example.org/hgsc.bcm.edu/lab-test-codes/' could not be found, so this coding was not checked. The CodeableConcept is still valid: another coding is in the value set (from https://tx.fhir.org/r4, see log, or see the servers logic) UNKNOWN_CODESYSTEM_CODING_NOT_CHECKED

0ms tx-op
0ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Analysing http://hl7.org/fhir/ValueSet/report-codes|4.0.1 for validation purposes
0ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Parameters: disp-lang=en-US, generate-narrative, default-to-latest
0ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Prepare include[0]: "(http://loinc.org)"
1ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: CodeSystem found: "http://loinc.org|2.82"
1ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Validate "[http://loinc.org#51969-4 ("undefined"), http://example.org/hgsc.bcm.edu/lab-test-codes/#emerge-seq-ngs-pnl ("undefined")]"
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Check "http://loinc.org#51969-4"
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: CodeSystem found: http://loinc.org|2.82 for http://loinc.org
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: check code in (http://loinc.org) at CodeableConcept.coding[0]
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Code "51969-4" found in http://loinc.org|2.82
3ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Check "http://example.org/hgsc.bcm.edu/lab-test-codes/#emerge-seq-ngs-pnl"
3ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Include for http://loinc.org not considered for "http://example.org/hgsc.bcm.edu/lab-test-codes/"

Variant

fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping.json Show Validation Information (1)

Path

Severity

Message

Validating

DiagnosticReport.code.coding[1].system (l9/c4)

warning

0ms tx-op
0ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Analysing http://hl7.org/fhir/ValueSet/report-codes|4.0.1 for validation purposes
0ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Parameters: disp-lang=en-US, generate-narrative, default-to-latest
0ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Prepare include[0]: "(http://loinc.org)"
1ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: CodeSystem found: "http://loinc.org|2.82"
1ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Validate "[http://loinc.org#51969-4 ("undefined"), http://example.org/hgsc.bcm.edu/lab-test-codes/#emerge-seq-ngs-pnl ("undefined")]"
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Check "http://loinc.org#51969-4"
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: CodeSystem found: http://loinc.org|2.82 for http://loinc.org
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: check code in (http://loinc.org) at CodeableConcept.coding[0]
2ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Code "51969-4" found in http://loinc.org|2.82
3ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Check "http://example.org/hgsc.bcm.edu/lab-test-codes/#emerge-seq-ngs-pnl"
3ms http://hl7.org/fhir/ValueSet/report-codes|4.0.1: Include for http://loinc.org not considered for "http://example.org/hgsc.bcm.edu/lab-test-codes/"

Molecular Biomarker

fsh-generated/resources/DiagnosticReport-diagnosticreport-hla-glstring-r4.json Show Validation Information (1)

✓

fsh-generated/resources/DiagnosticReport-somaticReport.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-CNVAnalysis-called.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-FullGenome-GRCh38.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-SimpleVariantAnalysis-called.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-UncallableRegions.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-WES-FullSequencedRegion-GRCh38.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-WES-UncallableRegions-GRCh38.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-genomicFileFatherBAM.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-genomicFileMotherBAM.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-genomicFileProbandBAM.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-genomicFileProbandVCF.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-genomicVCFfile-cnv.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-genomicVCFfile-simple.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-somaticVCFfile.json Show Validation Information (1)

✓

fsh-generated/resources/ImplementationGuide-genomics-reporting.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource ImplementationGuide/hl7.fhir.uv.genomics-reporting could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ATR-insertion-molc.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ATR-insertion-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ATR-insertion-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-AnnotationExample.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-EGFR-L858R-molc.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-EGFR-L858R-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-EGFR-L858R-therapuDrug2.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-EGFR-L858R-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ExampleGermlineCNV.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ExampleGermlineDEL.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ExampleGermlineINV.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ExampleSomaticCNV.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ExampleSomaticDEL.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ExampleSomaticINV.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-GenotypeExample1.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-GenotypeExamplePharmVar.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-GrouperEx01.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-GrouperEx02.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-GrouperEx03.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-HER2byImmuneStainExample.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-HER2byImmunoassayExample.json Show Validation Information (1)

Path

Severity

Message

Validating

Observation.code.coding[0].display (l107/c4)

error

Wrong Display Name 'HER2 [Units/volume] in Tissue by Immunoassay' for http://loinc.org#72382-5. Valid display is one of 3 choices: 'HER2 Ag [Units/volume] in Tissue by Immunoassay' (en-US), 'HER2 Ag [Units/volume] in Tissue by Immunoassay' (en-US) or 'Her2 Ag Tiss IA-aCnc' (en-US) (for the language(s) 'en-US') (from https://tx.fhir.org/r4, see log, or see the servers logic) Display_Name_for__should_be_one_of__instead_of

0ms tx-op
1ms http://loinc.org/vs|2.82: Validate "[http://loinc.org#72382-5 ("HER2 [Units/volume] in Tissue by Immunoassay")]"
1ms http://loinc.org/vs|2.82: Check "http://loinc.org#72382-5"
2ms http://loinc.org/vs|2.82: CodeSystem found: http://loinc.org|2.82 for http://loinc.org|2.82
2ms http://loinc.org/vs|2.82: check code in (http://loinc.org) at CodeableConcept.coding[0]
2ms http://loinc.org/vs|2.82: Code "72382-5" found in http://loinc.org|2.82

Molecular Biomarker

fsh-generated/resources/Observation-HLA-A-haplotype1.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-HLA-A-haplotype2.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-HLA-B-haplotype1.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-HLA-B-haplotype2.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-HLA-C-haplotype1.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-HLA-C-haplotype2.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-HaplotypeExamplePharmVar01.json Show Validation Information (3)

✓

fsh-generated/resources/Observation-HaplotypeExamplePharmVar02.json Show Validation Information (3)

✓

fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2.json Show Validation Information (4)

✓

fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2.json Show Validation Information (4)

✓

fsh-generated/resources/Observation-ISCN-CMLExample.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-ISCN-CMLImplication.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ISCN-NormalExample.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-MSH2-del-disease.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-MSH2-del-molc.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-MSH2-del-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-MSIExample.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-MicrosatelliteInstabilityExample01.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-MultipleRepeatExpansions.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-NOTCH1-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-NOTCH1-uncertain-molc.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-NOTCH1-uncertain-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-NTHL1-snv-disease.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-NTHL1-snv-molc.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-NTHL1-snv-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-PDL1Example.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-geno-1001.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-geno-1002.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-geno-1003.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1011.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1012.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1013.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1014.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1015.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1016.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1017.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1018.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1019.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1020.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Pgx-var-1021.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-PolyGenicDiagnosticImpExample.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ROS1-Fusion.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ROS1-Fusion-disease.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ROS1-Fusion-therapuDrug.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ROS1-Fusion-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-RepeatExpansion.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-SNVexample.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-STAG2-insertion-molc.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-STAG2-insertion-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-STAG2-insertion-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-SequencePhaseRelationExample1.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-TMB-therapuDrug.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TMBExample.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-TherapeuticImplicationExample1.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TumorMutationBurdenExample01.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-TxImp01.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TxImp02.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TxImp03.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TxImp04.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TxImp05.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TxImp06.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-VariantExample.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-VariantExample1.json Show Validation Information (3)

✓

fsh-generated/resources/Observation-VariantExample2.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-ZFHX3-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ZFHX3-uncertain-molc.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ZFHX3-uncertain-var.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-diagnosticImplication-interact-smn1-smn2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-genotype-hla-a-glstring-r4.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-haplotype-hla-a-1-r4.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-molec-conseq1.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-molec-conseq2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-molec-conseq3.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-molec-conseq4.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-obs-idh-ex.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-obs1-interact-smn1-smn2.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-obs2-interact-smn1-smn2.json Show Validation Information (5)

✓

fsh-generated/resources/Observation-pop-allele-freq.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-therapuDrug1-interact-smn1-smn2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-therapuDrug2-interact-smn1-smn2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-therapuDrug3-interact-smn1-smn2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-variant-with-molec-consequences.json Show Validation Information (5)

✓

fsh-generated/resources/OperationDefinition-find-population-dx-implications.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-population-dx-implications could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-population-molecular-consequences.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-population-molecular-consequences could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-population-specific-haplotypes.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-population-specific-haplotypes could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-population-specific-variants.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-population-specific-variants could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-population-structural-intersecting-variants.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-population-structural-intersecting-variants could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-population-structural-subsuming-variants.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-population-structural-subsuming-variants could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-population-tx-implications.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-population-tx-implications could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-study-metadata.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-study-metadata could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-dx-implications.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-dx-implications could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-haplotypes.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-haplotypes could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-molecular-consequences.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-molecular-consequences could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-specific-haplotypes.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-specific-haplotypes could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-specific-variants.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-specific-variants could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-structural-intersecting-variants.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-structural-intersecting-variants could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-structural-subsuming-variants.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-structural-subsuming-variants could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-tx-implications.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-tx-implications could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/OperationDefinition-find-subject-variants.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource OperationDefinition/find-subject-variants could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/Organization-ExampleLab.json Show Validation Information (1)

✓

fsh-generated/resources/Organization-ExampleOrg.json Show Validation Information (1)

✓

fsh-generated/resources/Organization-performingOrganization.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindALLPopulationSpecificVariantsOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindANYPopulationSpecificVariantsOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindPopulationDxImplicationsOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindPopulationMolecConseqOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindPopulationSpecificHaplotypesOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindPopulationStructuralIntersectingVariantsOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindPopulationStructuralSubsumingVariantsOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindPopulationTxImplicationsOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindStudyMetadataOutput.json Show Validation Information (1)

✓

fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput.json Show Validation Information (5)

✓

fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput.json Show Validation Information (5)

✓

fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput.json Show Validation Information (11)

✓

fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.json Show Validation Information (3)

✓

fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput.json Show Validation Information (3)

✓

fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput.json Show Validation Information (3)

✓

fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput.json Show Validation Information (3)

✓

fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput.json Show Validation Information (5)

✓

fsh-generated/resources/Parameters-FindSubjectVariantsOutput.json Show Validation Information (3)

✓

fsh-generated/resources/Patient-CGPatientExample01.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-ExamplePatient.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-HG00403.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-denovoChild.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-denovoFather.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-denovoMother.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-genomicPatient.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-somaticPatient.json Show Validation Information (1)

✓

fsh-generated/resources/Practitioner-orderingPractitioner.json Show Validation Information (1)

✓

fsh-generated/resources/Practitioner-pathologistPractitioner.json Show Validation Information (1)

✓

fsh-generated/resources/Practitioner-practitioner02.json Show Validation Information (1)

✓

fsh-generated/resources/Practitioner-supervisorPractitioner.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-PGXGenomicStudy.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-PGXGenomicStudyAnalysis.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-SequencingProcedure.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-analysisTumorNormalDNA.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-analysisTumorRNA.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-genomicstudy-trio2.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-genomicstudyanalysis-trio2.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-lungMass.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-lungMass-analysis1.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-lungMass-analysis2.json Show Validation Information (1)

✓

fsh-generated/resources/Procedure-somaticStudy.json Show Validation Information (1)

✓

fsh-generated/resources/RiskAssessment-GenRiskDiabetesT2.json Show Validation Information (1)

✓

fsh-generated/resources/ServiceRequest-ExampleServiceRequest.json Show Validation Information (1)

✓

fsh-generated/resources/ServiceRequest-GenomicServiceRequestExample01.json Show Validation Information (1)

✓

fsh-generated/resources/ServiceRequest-eMERGEServiceRequest.json Show Validation Information (1)

✓

fsh-generated/resources/ServiceRequest-genomicServiceRequest.json Show Validation Information (1)

✓

fsh-generated/resources/ServiceRequest-servicerequest-hla-a-r4.json Show Validation Information (1)

✓

fsh-generated/resources/ServiceRequest-somaticServiceRequest.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-ExampleSpecimen.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-GenomicSpecimenExample01.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-GenomicSpecimenExample02.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-genomicSpecimen.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-normalSpecimen.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-specimen-hla-r4.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-tumorSpecimen.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-annotation-code.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/annotation-code could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-coded-annotation.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/coded-annotation could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-diagnostic-implication.json Show Validation Information (1)

Path

Severity

Message

Validating

StructureDefinition.snapshot.element[4].binding.extension[0] (l1/c56497)

information

The extension http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet|5.3.0 is deprecated with the note: 'Use additionalBinding extension or element instead' MSG_DEPENDS_ON_DEPRECATED_NOTE

StructureDefinition

Observation.extension (l1/c61542)

information

The extension http://hl7.org/fhir/StructureDefinition/observation-secondaryFinding|5.3.0 is deprecated with the note: 'This extension is deprecated - use the [[[http://hl7.org/fhir/StructureDefinition/observation-structure-type]]] instead' MSG_DEPENDS_ON_DEPRECATED_NOTE

Resource

information

The resource StructureDefinition/diagnostic-implication could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-finding.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/finding could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-followup-recommendation.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/followup-recommendation could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-annotation.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-annotation could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-base.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-base could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-data-file.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-data-file could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-report.json Show Validation Information (1)

Path

Severity

Message

Validating

DiagnosticReport.extension (l1/c140783)

information

The extension http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database|5.3.0 is deprecated with the note: 'This extension has been replaced by the profiles and extensions defined in the "Genomics Reporting Guide" (https://hl7.org/fhir/uv/genomics-reporting/)' MSG_DEPENDS_ON_DEPRECATED_NOTE

DiagnosticReport.extension (l1/c141073)

information

The extension http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring|5.3.0 is deprecated with the note: 'This extension has been replaced by the profiles and extensions defined in the "Genomics Reporting Guide" (https://hl7.org/fhir/uv/genomics-reporting/)' MSG_DEPENDS_ON_DEPRECATED_NOTE

Resource

information

The resource StructureDefinition/genomic-report could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-report-note.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-report-note could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-risk-assessment.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-risk-assessment could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-change-type.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-change-type could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-device.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-device could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-ext.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-ext could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-focus.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-focus could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-genome-build.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-genome-build could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-genomic-source-class.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-genomic-source-class could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-input.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-input could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-method-type.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-method-type could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-metrics.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-metrics could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-output.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-output could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-protocol-performed.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-protocol-performed could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-regions.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-regions could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-specimen.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-specimen could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-analysis-title.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-analysis-title could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-reference.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-reference could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genomic-study-referrer-ext.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genomic-study-referrer-ext could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-genotype.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/genotype could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-haplotype.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/haplotype could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-implication.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/implication could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-knowledgebase-ancestry-group.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/knowledgebase-ancestry-group could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-medication-assessed-reference.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/medication-assessed-reference could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-medication-recommendation.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/medication-recommendation could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-molecular-biomarker.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/molecular-biomarker could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-molecular-consequence.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/molecular-consequence could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-recommended-action.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/recommended-action could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-repeat-motif-order.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/repeat-motif-order could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-sequence-phase-relationship.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/sequence-phase-relationship could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-therapeutic-implication.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/therapeutic-implication could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-therapy-assessed-reference.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/therapy-assessed-reference could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/StructureDefinition-variant.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

information

The resource StructureDefinition/variant could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/Task-MedicationRecommendationExample1.json Show Validation Information (1)

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fsh-generated/resources/Task-PGxRecEx01.json Show Validation Information (1)

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fsh-generated/resources/Task-PGxRecEx02.json Show Validation Information (1)

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fsh-generated/resources/Task-PGxRecEx03.json Show Validation Information (1)

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fsh-generated/resources/Task-PGxRecEx04.json Show Validation Information (1)

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fsh-generated/resources/Task-PGxRecEx05.json Show Validation Information (1)

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fsh-generated/resources/ValueSet-coded-annotation-types-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/coded-annotation-types-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-condition-inheritance-mode-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

ValueSet.compose.include[0] (l1/c4466)

information

The concepts in the value set include have not been validated because the code system 'http://human-phenotype-ontology.org' is not known, and no terminology service supports it VALUESET_INC_CS_NO_SUPPORT

Resource

error

The resource ValueSet/condition-inheritance-mode-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

ValueSet.where(id = 'condition-inheritance-mode-vs')

warning

Error from https://tx.fhir.org/r4: Error: A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the value set cannot be expanded (from server, see log)

fsh-generated/resources/ValueSet-dna-change-type-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/dna-change-type-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

ValueSet.where(id = 'dna-change-type-vs')

warning

Error from https://tx.fhir.org/r4: Error: A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the value set cannot be expanded (from server, see log)

fsh-generated/resources/ValueSet-evidence-level-example-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/evidence-level-example-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-functional-effect-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/functional-effect-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

ValueSet.where(id = 'functional-effect-vs')

warning

Error from https://tx.fhir.org/r4: Error: A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the value set cannot be expanded (from server, see log)

fsh-generated/resources/ValueSet-genetic-therapeutic-implications-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/genetic-therapeutic-implications-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-genomic-study-change-type-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/genomic-study-change-type-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

ValueSet.where(id = 'genomic-study-change-type-vs')

warning

Error from https://tx.fhir.org/r4: Error: A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the value set cannot be expanded (from server, see log)

fsh-generated/resources/ValueSet-genomic-study-data-format-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/genomic-study-data-format-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-genomic-study-method-type-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/genomic-study-method-type-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-genomic-study-status-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/genomic-study-status-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-genomic-study-type-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/genomic-study-type-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-hgnc-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/hgnc-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

ValueSet.where(id = 'hgnc-vs')

warning

Error from https://tx.fhir.org/r4: Error: A definition for CodeSystem 'http://www.genenames.org' could not be found, so the value set cannot be expanded (from server, see log)

fsh-generated/resources/ValueSet-hgvs-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/hgvs-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

ValueSet.where(id = 'hgvs-vs')

warning

Error from https://tx.fhir.org/r4: Error: The code system 'http://varnomen.hgvs.org' cannot be expanded because its codes cannot be iterated or enumerated in any meaningful sense (from server, see log)

fsh-generated/resources/ValueSet-knowledge-base-version-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/knowledge-base-version-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-molecular-biomarker-category-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/molecular-biomarker-category-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-molecular-biomarker-code-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

ValueSet.compose.include[0].concept[1] (l1/c5736)

information

Wrong Display Name 'HER2 [Units/volume] in Tissue by Immunoassay' for http://loinc.org#72382-5. Valid display is one of 3 choices: 'HER2 Ag [Units/volume] in Tissue by Immunoassay' (en-US), 'HER2 Ag [Units/volume] in Tissue by Immunoassay' (en-US) or 'Her2 Ag Tiss IA-aCnc' (en-US) (for the language(s) 'en-US'). Note that the display in the ValueSet does not have to match; this check exists to help check that it's not accidentally the wrong code VALUESET_CODE_CONCEPT_HINT

ValueSet.compose.include[1] (l1/c7086)

information

The value set references CodeSystem 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' which has status 'fragment' VALUESET_INCLUDE_CS_CONTENT

Resource

error

The resource ValueSet/molecular-biomarker-code-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-molecular-consequence-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/molecular-consequence-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

ValueSet.where(id = 'molecular-consequence-vs')

warning

Error from https://tx.fhir.org/r4: Error: A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the value set cannot be expanded (from server, see log)

fsh-generated/resources/ValueSet-sequence-phase-relationship-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/sequence-phase-relationship-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-tbd-codes-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/tbd-codes-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

fsh-generated/resources/ValueSet-variant-confidence-status-vs.json Show Validation Information (1)

Path

Severity

Message

Validating

Resource

error

The resource ValueSet/variant-confidence-status-vs must have an OID assigned to cater for possible use with OID based terminology systems e.g. CDA usage (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)

input/images Show Validation Information (0)

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input/images/3-cytogenomics-fig1.png Show Validation Information (0)

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input/images/4-pharmacogenomics-fig1-implications.png Show Validation Information (0)

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input/images/5-somatics-fig1-implications.png Show Validation Information (0)

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input/images/Report_Page1.svg Show Validation Information (0)

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input/images/Report_Page2.svg Show Validation Information (0)

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input/images/Report_Page3.svg Show Validation Information (0)

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input/images/Report_Page4.svg Show Validation Information (0)

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input/images/Somatic_General_Guidance.svg Show Validation Information (0)

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input/images/Somatic_Report_Overview.svg Show Validation Information (0)

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input/images/cgapps-StructureSMARTApps-fg1.png Show Validation Information (0)

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input/images/cgapps-genomicsAdviser-fg2.png Show Validation Information (0)

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input/images/cgapps-precisionCancerMedicine-fg3.png Show Validation Information (0)

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input/images/cgapps-precisionCancerMedicine-fg4.png Show Validation Information (0)

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input/images/cgapps-precisionCancerMedicine-fg5.png Show Validation Information (0)

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input/images/diagnostic-report-MixedUseOfGrouper.png Show Validation Information (0)

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input/images/diagnostic-report-groupingObservations.png Show Validation Information (0)

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input/images/diagnostic-report-no-grouping.png Show Validation Information (0)

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input/images/find-variants-fig1.png Show Validation Information (0)

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input/images/find-variants-fig2.png Show Validation Information (0)

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input/images/general-genomic-findings.png Show Validation Information (0)

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input/images/general-genomic-implications.png Show Validation Information (0)

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input/images/general-observations.png Show Validation Information (0)

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input/images/general-relationships.png Show Validation Information (0)

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input/images/general-report-overview.png Show Validation Information (0)

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input/images/genomicStudy.drawio Show Validation Information (0)

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input/images/genomicStudy.png Show Validation Information (0)

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input/images/histocompatibility-fig1-hla-a-genotype.png Show Validation Information (0)

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input/images/histocompatibility-fig2-hla-a-genotype-allele.png Show Validation Information (0)

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input/images/histocompatibility-fig3-hla-abc-genotype.png Show Validation Information (0)

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input/images/histocompatibility-fig4-hla-abc-genotype-allele.png Show Validation Information (0)

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input/images/implication-and-or-ex1.jpg Show Validation Information (0)

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input/images/implication-and-or-ex2.jpg Show Validation Information (0)

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input/images/implication-and-or-ex3.jpg Show Validation Information (0)

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input/images/implication-and-or-ex4.jpg Show Validation Information (0)

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input/images/implications.png Show Validation Information (0)

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input/images/molecularConsequences2.png Show Validation Information (0)

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input/images/molecularConsequences3.png Show Validation Information (0)

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input/images/operations.png Show Validation Information (0)

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input/images/pgx-guidance-figure-1.jpg Show Validation Information (0)

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input/images/pgx-guidance-figure-2.jpg Show Validation Information (0)

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input/images/pgx-guidance-figure-3.jpg Show Validation Information (0)

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input/images/zero-based.png Show Validation Information (0)

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input/includes/img.html Show Validation Information (0)

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input/includes/menu.xml Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-dx-implications-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-dx-implications-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-molecular-consequences-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-molecular-consequences-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-specific-haplotypes-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-specific-haplotypes-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-specific-variants-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-specific-variants-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-structural-intersecting-variants-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-structural-intersecting-variants-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-structural-subsuming-variants-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-structural-subsuming-variants-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-tx-implications-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-population-tx-implications-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-study-metadata-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-study-metadata-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-dx-implications-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-dx-implications-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-haplotypes-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-haplotypes-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-molecular-consequences-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-molecular-consequences-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-specific-haplotypes-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-specific-haplotypes-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-specific-variants-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-specific-variants-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-structural-intersecting-variants-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-structural-intersecting-variants-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-structural-subsuming-variants-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-structural-subsuming-variants-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-tx-implications-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-tx-implications-notes.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-variants-intro.md Show Validation Information (0)

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input/intro-notes/OperationDefinition-find-subject-variants-notes.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-coded-annotation-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-diagnostic-implication-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-finding-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-annotation-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-base-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-data-file-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-report-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-report-notes.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-study-analysis-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-study-analysis-metrics-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-study-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genomic-study-notes.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-genotype-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-haplotype-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-implication-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-molecular-biomarker-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-molecular-consequence-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-region-studied-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-sequence-phase-relationship-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-therapeutic-implication-intro.md Show Validation Information (0)

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input/intro-notes/StructureDefinition-variant-intro.md Show Validation Information (0)

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input/pages/artifacts.md Show Validation Information (0)

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input/pages/background.md Show Validation Information (0)

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input/pages/cgapps.md Show Validation Information (0)

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input/pages/changes.md Show Validation Information (0)

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input/pages/codings.md Show Validation Information (0)

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input/pages/conversion.md Show Validation Information (0)

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input/pages/cytogenomics.md Show Validation Information (0)

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input/pages/domain.md Show Validation Information (0)

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input/pages/downloads.md Show Validation Information (0)

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input/pages/general.md Show Validation Information (0)

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input/pages/glossary.md Show Validation Information (0)

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input/pages/groupingguidance.md Show Validation Information (0)

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input/pages/histocompatibility.md Show Validation Information (0)

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input/pages/index.md Show Validation Information (0)

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input/pages/molecularsequence.md Show Validation Information (0)

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input/pages/operations.md Show Validation Information (0)

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input/pages/pharmacogenomics.md Show Validation Information (0)

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input/pages/sequencing.md Show Validation Information (0)

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input/pages/somatics.md Show Validation Information (0)

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input/pages/spec.md Show Validation Information (0)

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input/pages/usecases.md Show Validation Information (0)

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input/pages/v2.md Show Validation Information (0)

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template/config Show Validation Information (0)

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template/config/_config.yml Show Validation Information (0)

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Suppressed Messages (Warnings, hints, broken links)

An example of DiagnosticImplication<Observation>.derivedFrom() that we slice to only allow our profiles. In this example, we did not define specific Variant instances and just refer to some variants by identifier (rather than a full resource), so ignoring these warnings

INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)
INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)

CG has reviewed these CodeSystems and have decided to keep this in our IG

INFORMATION: CodeSystem/clinvar-evidence-level-custom-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/coded-annotation-types-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-change-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-data-format-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-method-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-status-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/knowledge-base-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/molecular-biomarker-ontology-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/pharmgkb-evidence-level-custom-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/tbd-codes-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)

Each of these codes have been validated (as of Jul 5 2024), so suppressing these warnings until HPO becomes a supported code system.

WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].target: Target Code System http://www.sequenceontology.org doesn't have all content (content = not-present), so the target codes cannot be checked (1 uses)

GenomicReport<DiagnosticReport>.result referencing Observation instances. We have defined our report profile to slice .result with our Observation profiles. Slicing is open, this informational message can be ignored

INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[0].resource/*DiagnosticReport/report-withGrouping*/.result[4]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[2]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)

OCT 2025 - THE VALUESET IN THE WARNING BECAME 'null'

WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[0].target[0].code: The code 'SO:0002073' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[1].target[0].code: The code 'SO:0000159' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[2].target[0].code: The code 'SO:1000035' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[3].target[0].code: The code 'SO:0000667' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[4].target[0].code: The code 'SO:1000032' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[5].target[0].code: The code 'SO:1000036' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[6].target[0].code: The code 'SO:1000002' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)

Observation.component instances that do not match our slices, but is OK (and this is ok since we use open slicing)

INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[18]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[19]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
INFORMATION: Observation/variant-with-molec-consequences: Observation.component[9]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)

Our Observation profiles require a code from the Observation Category value set (LAB), but in some cases require additional codes from other value sets. Since this binding is "Preferred" the resources are still conformant, so we are Suppressing these messages.

None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|4.0.1), and a coding is recommended to come from this value set (codes = http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs#biomarker-category) (12 uses)
None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|4.0.1), and a coding is recommended to come from this value set (codes = http://terminology.hl7.org/CodeSystem/v2-0074#GE) (281 uses)

Pinned versions have been reviewed:

Pinned the version of http://hl7.org/fhir/StructureDefinition/% (48 uses)

Suppress all references to example CodeSystems

A definition for CodeSystem 'http://example.org/% (9 uses)

The IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420 - in short, the validator returns the "among choices" profiles in a different order different times, so suppressing by wildcard

Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices% (1 uses)
Found multiple matching profiles for Task/usage-1a among choices:% (1 uses)

The following code system are not discoverable because they are code systems in THO, but THO doesn't define the codes. They have been checked and the identifiers are correct

A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated (3 uses)
A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. No versions of this code system are known (5 uses)
A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (1 uses)
A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (3 uses)
A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (8 uses)
A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known (19 uses)
A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.31.0' could not be found, so the code cannot be validated. No versions of this code system are known (0 uses)
A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated% (94 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated (15 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' version '???' could not be found, so the code cannot be validated. No versions of this code system are known (1 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated (3 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' version '137' could not be found, so the code cannot be validated. No versions of this code system are known (1 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (152 uses)
A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated (9 uses)
A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (73 uses)
A definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated (2 uses)
A definition for CodeSystem 'https://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated (9 uses)

The mappings in this concept map have been human reviewed and is correct

INFORMATION: ConceptMap/dna-change-type-map: ConceptMap.group[0].source: Source Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons (1 uses)

These URLs have been validated and are apporpriately used in our examples

No definition could be found for URL value 'http://slk-kliniken.de/fhir/namingSystem/tissueID' (1 uses)
No definition could be found for URL value 'https://civicdb.org/evidence/2994/summary' (2 uses)
No definition could be found for URL value 'https://civicdb.org/evidence/7282/summary' (1 uses)
No definition could be found for URL value 'https://civicdb.org/molecular-profiles/2562/summary' (1 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-clopidogrel-and-cyp2c19' (2 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-selective-serotonin-reuptake-inhibitors-and-cyp2d6-and-cyp2c19/' (2 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-tricyclic-antidepressants-and-cyp2d6-and-cyp2c19/' (1 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-voriconazole-and-cyp2c19/' (1 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-warfarin-and-cyp2c9-and-vkorc1/' (1 uses)
No definition could be found for URL value 'https://gl.nmdp.org/imgt-hla/3.23.0/multilocus-unphased-genotype/ex' (1 uses)
No definition could be found for URL value 'https://pubmed.ncbi.nlm.nih.gov/29614695/' (3 uses)
No definition could be found for URL value 'https://pubmed.ncbi.nlm.nih.gov/33927380/' (3 uses)
No definition could be found for URL value 'https://www.cancer.net/cancer-types/lung-cancer-non-small-cell/types-treatment' (3 uses)
No definition could be found for URL value 'https://www.jmdjournal.org/cms/attachment/ee43a71b-81de-4cb3-ac5e-2fb9a7d41491/gr2.jpg' (4 uses)
No definition could be found for URL value 'https://www.ncbi.nlm.nih.gov/clinvar/variation/53685/#clinical-assertions' (1 uses)
No definition could be found for URL value 'https://www.ncbi.nlm.nih.gov/gene/545#:~:text=ATR%20may%20function%20as%20an,radiation%20when%20ATM%20is%20deficient' (2 uses)

These slice messages have been reviewed, and our StructureDefinition apporpriately defines the slices of extension, and examples look valid. Have asked for feedback here: https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-9*/.component[3].extension[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-14*/.component[0].extension[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication% (1 uses)

These slice messages that have been reviewed. Each of these refer to (via derivedFrom) a Variant, and are a valid Variant instance. They are similar to ones mentioned on https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)

This version number has been validated

WARNING: Observation/haplotype-hla-a-1-r4: Observation.value.ofType(CodeableConcept).coding[0].system: A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.31.0' could not be found, so the code cannot be validated. No versions of this code system are known (1 uses)

We define several experimental CodeSystems that we use, so OK to suppress this for all IG defined CSs, https://chat.fhir.org/#narrow/channel/179202-terminology/topic/Overuse.20of.20the.20Experimental.20flag, https://confluence.hl7.org/x/LKOZCQ

Reference to experimental CodeSystem http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/% (283 uses)
Reference to experimental CodeSystem http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs% (11 uses)

not defined in this IG, so it must be a problem upstream

The extension http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet|5.2.0 is deprecated (0 uses)

Errors sorted by type

Display_Name_for__should_be_one_of__instead_of

fsh-generated/resources/Observation-HER2byImmunoassayExample.json

Molecular Biomarker

MSG_DEPENDS_ON_DEPRECATED_NOTE

fsh-generated/resources/StructureDefinition-diagnostic-implication.json

The extension http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet|5.3.0 is deprecated with the note: 'Use additionalBinding extension or element instead'

StructureDefinition

fsh-generated/resources/StructureDefinition-diagnostic-implication.json

fsh-generated/resources/StructureDefinition-genomic-report.json

UNKNOWN_CODESYSTEM_CODING_NOT_CHECKED

fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE.json

Variant

fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping.json

Molecular Biomarker

VALUESET_CODE_CONCEPT_HINT

fsh-generated/resources/ValueSet-molecular-biomarker-code-vs.json

Wrong Display Name 'HER2 [Units/volume] in Tissue by Immunoassay' for http://loinc.org#72382-5. Valid display is one of 3 choices: 'HER2 Ag [Units/volume] in Tissue by Immunoassay' (en-US), 'HER2 Ag [Units/volume] in Tissue by Immunoassay' (en-US) or 'Her2 Ag Tiss IA-aCnc' (en-US) (for the language(s) 'en-US'). Note that the display in the ValueSet does not have to match; this check exists to help check that it's not accidentally the wrong code

VALUESET_INCLUDE_CS_CONTENT

fsh-generated/resources/ValueSet-molecular-biomarker-code-vs.json

The value set references CodeSystem 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' which has status 'fragment'

VALUESET_INC_CS_NO_SUPPORT

fsh-generated/resources/ValueSet-condition-inheritance-mode-vs.json

The concepts in the value set include have not been validated because the code system 'http://human-phenotype-ontology.org' is not known, and no terminology service supports it