Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: PGXGenomicStudy - TTL Representation

Page standards status: Informative

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:GenomicStudy ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "PGXGenomicStudy"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: GenomicStudy PGXGenomicStudy</b></p><a name=\"PGXGenomicStudy\"> </a><a name=\"hcPGXGenomicStudy\"> </a><p><b>status</b>: Available</p><p><b>type</b>: <span title=\"Codes:\">PGX sequencing panel</span></p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</a></p><p><b>startDate</b>: 2021-01-01</p><p><b>basedOn</b>: <a href=\"ServiceRequest-eMERGEServiceRequest.html\">ServiceRequest emerge-seq-ngs-pnl</a></p><p><b>note</b>: </p><blockquote><div><p>For technical reasons, PIK3CB was deemed uncallable.</p>\n</div></blockquote><h3>Analyses</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>GenomeBuild</b></td><td><b>Date</b></td><td><b>Note</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org LA26806-2}\">GRCh38</span></td><td>2021-01-01 01:01:10-0600</td><td><blockquote><div><p>protein-coding and exon-splicing regions</p>\n</div></blockquote></td></tr></table></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:status [ fhir:v "available"] ; # 
  fhir:type ( [
fhir:text [ fhir:v "PGX sequencing panel" ]
  ] ) ; # 
  fhir:subject [
fhir:reference [ fhir:v "Patient/CGPatientExample01" ]
  ] ; # 
  fhir:startDate [ fhir:v "2021-01-01"^^xsd:date] ; # 
  fhir:basedOn ( [
fhir:reference [ fhir:v "ServiceRequest/eMERGEServiceRequest" ]
  ] ) ; # 
  fhir:note ( [
fhir:text [ fhir:v "For technical reasons, PIK3CB was deemed uncallable." ]
  ] ) ; # 
  fhir:analysis ( [
fhir:genomeBuild [
      ( fhir:coding [
a loinc:LA26806-2 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA26806-2" ] ;
fhir:display [ fhir:v "GRCh38" ]       ] )     ] ;
fhir:date [ fhir:v "2021-01-01T01:01:10-06:00"^^xsd:dateTime ] ;
    ( fhir:note [
fhir:text [ fhir:v "protein-coding and exon-splicing regions" ]     ] )
  ] ) . #