Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot
Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot
Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
@prefix fhir: <http://hl7.org/fhir/> . @prefix loinc: <https://loinc.org/rdf/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix sct: <http://snomed.info/id/> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- a fhir:Bundle ; fhir:nodeRole fhir:treeRoot ; fhir:id [ fhir:v "bundle-CG-IG-HLA-FullBundle-01"] ; # fhir:type [ fhir:v "transaction"] ; # fhir:entry ( [ fhir:fullUrl [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:13f34265-335c-4853-bc38-0815315edafa> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Patient"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Specimen"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Organization"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:00ef18ad-ed04-4b2c-81ee-b69bb243f0d5"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:00ef18ad-ed04-4b2c-81ee-b69bb243f0d5> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Organization"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "ServiceRequest"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:792be53e-d4fb-4887-a367-815ef6c706e5"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:792be53e-d4fb-4887-a367-815ef6c706e5> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:709c5315-9403-4867-9d82-0b953836665f"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:709c5315-9403-4867-9d82-0b953836665f> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:8b2aa21c-1426-4717-8ab0-a84d83df7d47"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:8b2aa21c-1426-4717-8ab0-a84d83df7d47> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:0e0a780e-4486-4cd0-bfae-7243c579f208"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:0e0a780e-4486-4cd0-bfae-7243c579f208> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "Observation"^^xsd:anyURI ] ] ] [ fhir:fullUrl [ fhir:v "urn:uuid:b0a4b18e-94e7-4b1b-8031-c7ae4bdd8db9"^^xsd:anyURI ] ; ( fhir:resource <urn:uuid:b0a4b18e-94e7-4b1b-8031-c7ae4bdd8db9> ) ; fhir:request [ fhir:method [ fhir:v "POST" ] ; fhir:url [ fhir:v "DiagnosticReport"^^xsd:anyURI ] ] ] ) . # <urn:uuid:13f34265-335c-4853-bc38-0815315edafa> a fhir:Patient ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-1"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Patient_CG-IG-HLA-FullBundle-01-1\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Patient CG-IG-HLA-FullBundle-01-1</b></p><a name=\"CG-IG-HLA-FullBundle-01-1\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-1\"> </a><p style=\"border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;\">John Storm(official) Male, DoB: 1986-12-31 ( Donor Registration Number (use: usual, period: 2012-11-10 --> (ongoing)))</p><hr/></div>"^^rdf:XMLLiteral ] ; # fhir:identifier ( [ fhir:use [ fhir:v "usual" ] ; fhir:type [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ] ; fhir:code [ fhir:v "DR" ] ] ) ] ; fhir:system [ fhir:v "http://example.org"^^xsd:anyURI ] ; fhir:value [ fhir:v "12345" ] ; fhir:period [ fhir:start [ fhir:v "2012-11-10"^^xsd:date ] ] ; fhir:assigner [ fhir:display [ fhir:v "aDonorRegistry" ] ] ] ) ; # fhir:name ( [ fhir:use [ fhir:v "official" ] ; fhir:text [ fhir:v "John Storm" ] ; fhir:family [ fhir:v "Storm" ] ; ( fhir:given [ fhir:v "John" ] ) ] [ fhir:use [ fhir:v "nickname" ] ; fhir:text [ fhir:v "Johnny Storm" ] ; fhir:family [ fhir:v "Storm" ] ; ( fhir:given [ fhir:v "Johnny" ] ) ] [ fhir:use [ fhir:v "nickname" ] ; fhir:text [ fhir:v "The Human Torch" ] ] ) ; # fhir:gender [ fhir:v "male"] ; # fhir:birthDate [ fhir:v "1986-12-31"^^xsd:date] . # <urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340> a fhir:Specimen ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-2"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Specimen_CG-IG-HLA-FullBundle-01-2\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Specimen CG-IG-HLA-FullBundle-01-2</b></p><a name=\"CG-IG-HLA-FullBundle-01-2\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-2\"> </a><p><b>identifier</b>: <code>http://example.org</code>/123</p><p><b>accessionIdentifier</b>: <code>http://example.org</code>/456</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 122555007}\">Venous blood specimen</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p></div>"^^rdf:XMLLiteral ] ; # fhir:identifier ( [ fhir:system [ fhir:v "http://example.org"^^xsd:anyURI ] ; fhir:value [ fhir:v "123" ] ] ) ; # fhir:accessionIdentifier [ fhir:system [ fhir:v "http://example.org"^^xsd:anyURI ] ; fhir:value [ fhir:v "456" ] ] ; # fhir:type [ ( fhir:coding [ a sct:122555007 ; fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ; fhir:code [ fhir:v "122555007" ] ; fhir:display [ fhir:v "Venous blood specimen" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] . # <urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950> a fhir:Organization ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-3"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Organization_CG-IG-HLA-FullBundle-01-3\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Organization CG-IG-HLA-FullBundle-01-3</b></p><a name=\"CG-IG-HLA-FullBundle-01-3\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-3\"> </a><p><b>name</b>: aTypingLab Inc</p><p><b>alias</b>: aTL</p><h3>Contacts</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Telecom</b></td><td><b>Address</b></td></tr><tr><td style=\"display: none\">*</td><td>ph: 1-800-555-1234(Work)</td><td>123 Main St, Sometown, ND 99999(work)</td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:name [ fhir:v "aTypingLab Inc"] ; # fhir:alias ( [ fhir:v "aTL"] ) ; # fhir:contact ( [ ( fhir:telecom [ fhir:system [ fhir:v "phone" ] ; fhir:value [ fhir:v "1-800-555-1234" ] ; fhir:use [ fhir:v "work" ] ; fhir:rank [ fhir:v "1"^^xsd:positiveInteger ] ] ) ; fhir:address [ fhir:use [ fhir:v "work" ] ; fhir:type [ fhir:v "physical" ] ; fhir:text [ fhir:v "123 Main St, Sometown, ND 99999" ] ; ( fhir:line [ fhir:v "123 Main St" ] ) ; fhir:city [ fhir:v "Sometown" ] ; fhir:state [ fhir:v "ND" ] ; fhir:postalCode [ fhir:v "99999" ] ; fhir:country [ fhir:v "USA" ] ] ] ) . # <urn:uuid:00ef18ad-ed04-4b2c-81ee-b69bb243f0d5> a fhir:Organization ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-4"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Organization_CG-IG-HLA-FullBundle-01-4\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Organization CG-IG-HLA-FullBundle-01-4</b></p><a name=\"CG-IG-HLA-FullBundle-01-4\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-4\"> </a><p><b>name</b>: aDonorRegistry</p><p><b>alias</b>: ADR</p><h3>Contacts</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Telecom</b></td><td><b>Address</b></td></tr><tr><td style=\"display: none\">*</td><td>ph: 1-800-555-6789(Work)</td><td>456 Main St, Anytown ND, 00000(work)</td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:name [ fhir:v "aDonorRegistry"] ; # fhir:alias ( [ fhir:v "ADR"] ) ; # fhir:contact ( [ ( fhir:telecom [ fhir:system [ fhir:v "phone" ] ; fhir:value [ fhir:v "1-800-555-6789" ] ; fhir:use [ fhir:v "work" ] ; fhir:rank [ fhir:v "1"^^xsd:positiveInteger ] ] ) ; fhir:address [ fhir:use [ fhir:v "work" ] ; fhir:type [ fhir:v "physical" ] ; fhir:text [ fhir:v "456 Main St, Anytown ND, 00000" ] ; ( fhir:line [ fhir:v "456 Main St" ] ) ; fhir:city [ fhir:v "Anytown" ] ; fhir:state [ fhir:v "ND" ] ; fhir:postalCode [ fhir:v "00000" ] ; fhir:country [ fhir:v "USA" ] ] ] ) . # <urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea> a fhir:ServiceRequest ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-5"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"ServiceRequest_CG-IG-HLA-FullBundle-01-5\"> </a><p class=\"res-header-id\"><b>Generated Narrative: ServiceRequest CG-IG-HLA-FullBundle-01-5</b></p><a name=\"CG-IG-HLA-FullBundle-01-5\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-5\"> </a><p><b>status</b>: Completed</p><p><b>intent</b>: Order</p><h3>Codes</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Concept</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 13303-3}\">HLA-A+B+C (class I) [Type]</span></td></tr></table><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>authoredOn</b>: 2016-11-15</p><p><b>requester</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-00ef18ad-ed04-4b2c-81ee-b69bb243f0d5\">aDonorRegistry</a></p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><h3>Reasons</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Concept</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:\">tissue typing for donor registry</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:status [ fhir:v "completed"] ; # fhir:intent [ fhir:v "order"] ; # fhir:code [ fhir:concept [ ( fhir:coding [ a loinc:13303-3 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "13303-3" ] ; fhir:display [ fhir:v "HLA-A+B+C (class I) [Type]" ] ] ) ] ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:authoredOn [ fhir:v "2016-11-15"^^xsd:date] ; # fhir:requester [ fhir:reference [ fhir:v "urn:uuid:00ef18ad-ed04-4b2c-81ee-b69bb243f0d5" ] ; fhir:type [ fhir:v "Organization"^^xsd:anyURI ] ; fhir:display [ fhir:v "aDonorRegistry" ] ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:type [ fhir:v "Organization"^^xsd:anyURI ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:reason ( [ fhir:concept [ fhir:text [ fhir:v "tissue typing for donor registry" ] ] ] ) . # <urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-10"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-10\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-10</b></p><a name=\"CG-IG-HLA-FullBundle-01-10\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-10\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-haplotype.html\">Haplotype</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84414-2}\">Haplotype name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-A*01:01:01G}\">HLA-A*01:01:01G</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4931}\">HLA-A</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84414-2 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84414-2" ] ; fhir:display [ fhir:v "Haplotype name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.ebi.ac.uk/ipd/imgt/hla"^^xsd:anyURI ] ; fhir:version [ fhir:v "3.23" ] ; fhir:code [ fhir:v "HLA-A*01:01:01G" ] ; fhir:display [ fhir:v "HLA-A*01:01:01G" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4931" ] ; fhir:display [ fhir:v "HLA-A" ] ] ) ] ] ) . # <urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-11"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-11\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-11</b></p><a name=\"CG-IG-HLA-FullBundle-01-11\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-11\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-haplotype.html\">Haplotype</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84414-2}\">Haplotype name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-A*01:02}\">HLA-A*01:02</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4931}\">HLA-A</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84414-2 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84414-2" ] ; fhir:display [ fhir:v "Haplotype name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.ebi.ac.uk/ipd/imgt/hla"^^xsd:anyURI ] ; fhir:version [ fhir:v "3.23" ] ; fhir:code [ fhir:v "HLA-A*01:02" ] ; fhir:display [ fhir:v "HLA-A*01:02" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4931" ] ; fhir:display [ fhir:v "HLA-A" ] ] ) ] ] ) . # <urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-12"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-12\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-12</b></p><a name=\"CG-IG-HLA-FullBundle-01-12\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-12\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genotype.html\">Genotype</a></p></div><p><b>basedOn</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-99309303-045e-4cf4-90d7-250d7a7476ea\">Class I HLA genotyping for John Storm</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84413-4}\">Genotype display name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://glstring.org hla#3.23.0#HLA-A:01:01G+HLA-A*01:02}\">hla#3.23.0#HLA-A:01:01G+HLA-A*01:02</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-b7765bbf-df40-486a-9f2f-404309643de6\">HLA-A*01:01:01G, exons 2 and 3</a></li><li><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-d98d92a7-0e86-4ae5-b036-b7e1bba6ec32\">HLA-A*01:02, exons 2 and 3</a></li></ul><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4931}\">HLA-A</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:basedOn ( [ fhir:reference [ fhir:v "urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea" ] ; fhir:type [ fhir:v "ServiceRequest"^^xsd:anyURI ] ; fhir:display [ fhir:v "Class I HLA genotyping for John Storm" ] ] ) ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84413-4 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84413-4" ] ; fhir:display [ fhir:v "Genotype display name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://glstring.org"^^xsd:anyURI ] ; fhir:version [ fhir:v "1.0" ] ; fhir:code [ fhir:v "hla#3.23.0#HLA-A:01:01G+HLA-A*01:02" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:derivedFrom ( [ fhir:reference [ fhir:v "urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-A*01:01:01G, exons 2 and 3" ] ] [ fhir:reference [ fhir:v "urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-A*01:02, exons 2 and 3" ] ] ) ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4931" ] ; fhir:display [ fhir:v "HLA-A" ] ] ) ] ] ) . # <urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-17"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-17\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-17</b></p><a name=\"CG-IG-HLA-FullBundle-01-17\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-17\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-haplotype.html\">Haplotype</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84414-2}\">Haplotype name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HGG00041}\">HLA-B*15:01:01G</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4932}\">HLA-B</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84414-2 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84414-2" ] ; fhir:display [ fhir:v "Haplotype name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.ebi.ac.uk/ipd/imgt/hla"^^xsd:anyURI ] ; fhir:version [ fhir:v "3.23" ] ; fhir:code [ fhir:v "HGG00041" ] ; fhir:display [ fhir:v "HLA-B*15:01:01G" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4932" ] ; fhir:display [ fhir:v "HLA-B" ] ] ) ] ] ) . # <urn:uuid:792be53e-d4fb-4887-a367-815ef6c706e5> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-18"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-18\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-18</b></p><a name=\"CG-IG-HLA-FullBundle-01-18\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-18\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-haplotype.html\">Haplotype</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84414-2}\">Haplotype name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-B*57:01:01G}\">HLA-B*57:01:01G</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4932}\">HLA-B</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84414-2 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84414-2" ] ; fhir:display [ fhir:v "Haplotype name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.ebi.ac.uk/ipd/imgt/hla"^^xsd:anyURI ] ; fhir:version [ fhir:v "3.23" ] ; fhir:code [ fhir:v "HLA-B*57:01:01G" ] ; fhir:display [ fhir:v "HLA-B*57:01:01G" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4932" ] ; fhir:display [ fhir:v "HLA-B" ] ] ) ] ] ) . # <urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-19"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-19\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-19</b></p><a name=\"CG-IG-HLA-FullBundle-01-19\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-19\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genotype.html\">Genotype</a></p></div><p><b>basedOn</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-99309303-045e-4cf4-90d7-250d7a7476ea\">Class I HLA genotyping for John Storm</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84413-4}\">Genotype display name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://glstring.org hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G}\">hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e2092243-2970-49d2-a90f-b90d1d49715a\">HLA-B*15:01:01G, exons 2 and 3</a></li><li><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-792be53e-d4fb-4887-a367-815ef6c706e5\">HLA-B*57:01:01G, exons 2 and 3</a></li></ul><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4932}\">HLA-B</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:basedOn ( [ fhir:reference [ fhir:v "urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea" ] ; fhir:type [ fhir:v "ServiceRequest"^^xsd:anyURI ] ; fhir:display [ fhir:v "Class I HLA genotyping for John Storm" ] ] ) ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84413-4 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84413-4" ] ; fhir:display [ fhir:v "Genotype display name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://glstring.org"^^xsd:anyURI ] ; fhir:version [ fhir:v "1.0" ] ; fhir:code [ fhir:v "hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:derivedFrom ( [ fhir:reference [ fhir:v "urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-B*15:01:01G, exons 2 and 3" ] ] [ fhir:reference [ fhir:v "urn:uuid:792be53e-d4fb-4887-a367-815ef6c706e5" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-B*57:01:01G, exons 2 and 3" ] ] ) ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4932" ] ; fhir:display [ fhir:v "HLA-B" ] ] ) ] ] ) . # <urn:uuid:709c5315-9403-4867-9d82-0b953836665f> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-24"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-24\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-24</b></p><a name=\"CG-IG-HLA-FullBundle-01-24\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-24\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-haplotype.html\">Haplotype</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84414-2}\">Haplotype name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-C*01:02:01G}\">HLA-C*01:02:01G</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4933}\">HLA-C</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84414-2 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84414-2" ] ; fhir:display [ fhir:v "Haplotype name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.ebi.ac.uk/ipd/imgt/hla"^^xsd:anyURI ] ; fhir:version [ fhir:v "3.23" ] ; fhir:code [ fhir:v "HLA-C*01:02:01G" ] ; fhir:display [ fhir:v "HLA-C*01:02:01G" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4933" ] ; fhir:display [ fhir:v "HLA-C" ] ] ) ] ] ) . # <urn:uuid:8b2aa21c-1426-4717-8ab0-a84d83df7d47> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-25"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-25\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-25</b></p><a name=\"CG-IG-HLA-FullBundle-01-25\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-25\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-haplotype.html\">Haplotype</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84414-2}\">Haplotype name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-C*01:02:01G}\">HLA-C*01:02:01G</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4933}\">HLA-C</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84414-2 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84414-2" ] ; fhir:display [ fhir:v "Haplotype name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.ebi.ac.uk/ipd/imgt/hla"^^xsd:anyURI ] ; fhir:version [ fhir:v "3.23" ] ; fhir:code [ fhir:v "HLA-C*01:02:01G" ] ; fhir:display [ fhir:v "HLA-C*01:02:01G" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4933" ] ; fhir:display [ fhir:v "HLA-C" ] ] ) ] ] ) . # <urn:uuid:0e0a780e-4486-4cd0-bfae-7243c579f208> a fhir:Observation ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-26"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_CG-IG-HLA-FullBundle-01-26\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-26</b></p><a name=\"CG-IG-HLA-FullBundle-01-26\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-26\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genotype.html\">Genotype</a></p></div><p><b>basedOn</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-99309303-045e-4cf4-90d7-250d7a7476ea\">Class I HLA genotyping for John Storm</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84413-4}\">Genotype display name</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa\">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab, Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://glstring.org hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G}\">hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G</span></p><p><b>method</b>: <span title=\"Codes:{https://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}\">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340\">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-8b2aa21c-1426-4717-8ab0-a84d83df7d47\">HLA-C*03:04:01G, exons 2 and 3</a></li><li><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-709c5315-9403-4867-9d82-0b953836665f\">HLA-C*01:02:01G, exons 2 and 3</a></li></ul><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4933}\">HLA-C</span></td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:basedOn ( [ fhir:reference [ fhir:v "urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea" ] ; fhir:type [ fhir:v "ServiceRequest"^^xsd:anyURI ] ; fhir:display [ fhir:v "Class I HLA genotyping for John Storm" ] ] ) ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ] ; fhir:code [ fhir:v "laboratory" ] ] ) ] [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:84413-4 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "84413-4" ] ; fhir:display [ fhir:v "Genotype display name" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:display [ fhir:v "aTypingLab, Inc" ] ] ) ; # fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://glstring.org"^^xsd:anyURI ] ; fhir:version [ fhir:v "1.0" ] ; fhir:code [ fhir:v "hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G" ] ] ) ] ; # fhir:method [ ( fhir:coding [ fhir:system [ fhir:v "https://www.ncbi.nlm.nih.gov/gtr"^^xsd:anyURI ] ; fhir:code [ fhir:v "GTR000000000.0" ] ] ) ; fhir:text [ fhir:v "NGS based Class I HLA-A, -B, -C genotyping" ] ] ; # fhir:specimen [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ; # fhir:derivedFrom ( [ fhir:reference [ fhir:v "urn:uuid:8b2aa21c-1426-4717-8ab0-a84d83df7d47" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-C*03:04:01G, exons 2 and 3" ] ] [ fhir:reference [ fhir:v "urn:uuid:709c5315-9403-4867-9d82-0b953836665f" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-C*01:02:01G, exons 2 and 3" ] ] ) ; # fhir:component ( [ fhir:code [ ( fhir:coding [ a loinc:48018-6 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "48018-6" ] ; fhir:display [ fhir:v "Gene studied [ID]" ] ] ) ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.genenames.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "HGNC:4933" ] ; fhir:display [ fhir:v "HLA-C" ] ] ) ] ] ) . # <urn:uuid:b0a4b18e-94e7-4b1b-8031-c7ae4bdd8db9> a fhir:DiagnosticReport ; fhir:id [ fhir:v "CG-IG-HLA-FullBundle-01-27"] ; # fhir:meta [ ( fhir:profile [ fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report"^^xsd:anyURI ; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report> ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"DiagnosticReport_CG-IG-HLA-FullBundle-01-27\"> </a><p class=\"res-header-id\"><b>Generated Narrative: DiagnosticReport CG-IG-HLA-FullBundle-01-27</b></p><a name=\"CG-IG-HLA-FullBundle-01-27\"> </a><a name=\"hcCG-IG-HLA-FullBundle-01-27\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-report.html\">Genomic Report</a></p></div><h2><span title=\"Codes:{http://loinc.org 51969-4}\">Genetic analysis report</span> (<span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span>) </h2><table class=\"grid\"><tr><td>Subject</td><td>John Storm(official) Male, DoB: 1986-12-31 ( Donor Registration Number (use: usual, period: 2012-11-10 --> (ongoing)))</td></tr><tr><td>When For</td><td>2016-12-15</td></tr><tr><td>Reported</td><td>2016-12-15 14:15:30-0600</td></tr><tr><td>Performer</td><td> <a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950\">aTypingLab Inc</a></td></tr></table><p><b>Report Details</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td></tr><tr><td><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-49a86246-4004-42eb-9bdc-f542f93f9228\"><span title=\"Codes:{http://loinc.org 84413-4}\">Genotype display name</span></a></td><td><span title=\"Codes:{http://glstring.org hla#3.23.0#HLA-A:01:01G+HLA-A*01:02}\">hla#3.23.0#HLA-A:01:01G+HLA-A*01:02</span></td><td>Final</td></tr><tr><td><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-60613a43-c4cb-4502-b3e2-cf9215feaa70\"><span title=\"Codes:{http://loinc.org 84413-4}\">Genotype display name</span></a></td><td><span title=\"Codes:{http://glstring.org hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G}\">hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G</span></td><td>Final</td></tr><tr><td><a href=\"Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-0e0a780e-4486-4cd0-bfae-7243c579f208\"><span title=\"Codes:{http://loinc.org 84413-4}\">Genotype display name</span></a></td><td><span title=\"Codes:{http://glstring.org hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G}\">hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G</span></td><td>Final</td></tr></table></div>"^^rdf:XMLLiteral ] ; # fhir:extension ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database"^^xsd:anyURI ] ; fhir:value [ a fhir:CodeableConcept ; ( fhir:coding [ fhir:system [ fhir:v "http://www.ebi.ac.uk/ipd/imgt/hla"^^xsd:anyURI ] ; fhir:version [ fhir:v "3.23" ] ] ) ] ] [ ( fhir:extension [ fhir:url [ fhir:v "text"^^xsd:anyURI ] ; fhir:value [ a fhir:string ; fhir:v "HLA-A*01:01:01G+HLA-A*01:02^HLA-B*15:01:01G+HLA-B*57:01:01G^HLA-C*01:02:01G+HLA-C*03:04:01G" ] ] [ fhir:url [ fhir:v "url"^^xsd:anyURI ] ; fhir:value [ a fhir:uri ; fhir:v "https://gl.nmdp.org/imgt-hla/3.23.0/multilocus-unphased-genotype/ex"^^xsd:anyURI ] ] ) ; fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring"^^xsd:anyURI ] ] ) ; # fhir:basedOn ( [ fhir:reference [ fhir:v "urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea" ] ; fhir:type [ fhir:v "ServiceRequest"^^xsd:anyURI ] ; fhir:display [ fhir:v "Class I HLA genotyping for John Storm" ] ] ) ; # fhir:status [ fhir:v "final"] ; # fhir:category ( [ ( fhir:coding [ fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ] ; fhir:code [ fhir:v "GE" ] ; fhir:display [ fhir:v "Genetics" ] ] ) ] ) ; # fhir:code [ ( fhir:coding [ a loinc:51969-4 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ; fhir:code [ fhir:v "51969-4" ] ; fhir:display [ fhir:v "Genetic analysis report" ] ] ) ] ; # fhir:subject [ fhir:reference [ fhir:v "urn:uuid:13f34265-335c-4853-bc38-0815315edafa" ] ; fhir:type [ fhir:v "Patient"^^xsd:anyURI ] ; fhir:display [ fhir:v "John Storm" ] ] ; # fhir:effective [ a fhir:dateTime ; fhir:v "2016-12-15"^^xsd:date ] ; # fhir:issued [ fhir:v "2016-12-15T14:15:30-06:00"^^xsd:dateTime] ; # fhir:performer ( [ fhir:reference [ fhir:v "urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950" ] ; fhir:type [ fhir:v "Organization"^^xsd:anyURI ] ; fhir:display [ fhir:v "aTypingLab Inc" ] ] ) ; # fhir:specimen ( [ fhir:reference [ fhir:v "urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340" ] ; fhir:display [ fhir:v "buccal swab from John Storm" ] ] ) ; # fhir:result ( [ fhir:reference [ fhir:v "urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-A: HLA-A:01:01:01G+HLA-A*01:02" ] ] [ fhir:reference [ fhir:v "urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-B: HLA-B*15:01:01G+HLA-B*57:01:01G" ] ] [ fhir:reference [ fhir:v "urn:uuid:0e0a780e-4486-4cd0-bfae-7243c579f208" ] ; fhir:type [ fhir:v "Observation"^^xsd:anyURI ] ; fhir:display [ fhir:v "HLA-C: HLA-C*01:02:01G+HLA-C*03:04:01G" ] ] ) . #
IG © 2025+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#4.0.0-ballot based on FHIR 6.0.0-ballot3. Generated 2025-10-16
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