Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
Official URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input | Version: 4.0.0-ballot | |||
Standards status: Trial-use | Maturity Level: 2 | Computable Name: GenomicStudyAnalysisInput |
Genomic Study Analysis Input
Context of Use
This extension may be used on the following element(s):
Usage info
Usages:
You can also check for usages in the FHIR IG Statistics
Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.
This structure is derived from Extension
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
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0..* | Extension | Genomic Study Analysis Input | |
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Content/Rules for all slices | |||
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0..1 | Extension | GenomicStudy.analysis.input.file | |
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0..0 | |||
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1..1 | uri | "file" | |
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0..1 | Reference(Genomic Data File) | Value of extension | |
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0..1 | Extension | GenomicStudy.analysis.input.type | |
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0..0 | |||
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1..1 | uri | "type" | |
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0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
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0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
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0..0 | |||
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1..1 | uri | "generatedBy" | |
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0..1 | Value of extension | ||
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Identifier | |||
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Reference(Genomic Study) | |||
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1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
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0..0 | |||
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Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
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0..* | Extension | Genomic Study Analysis Input | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
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0..1 | Extension | GenomicStudy.analysis.input.file | |
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0..1 | string | Unique id for inter-element referencing | |
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0..0 | |||
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1..1 | uri | "file" | |
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0..1 | Reference(Genomic Data File) | Value of extension | |
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0..1 | Extension | GenomicStudy.analysis.input.type | |
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0..1 | string | Unique id for inter-element referencing | |
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0..0 | |||
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1..1 | uri | "type" | |
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0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
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0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
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0..1 | string | Unique id for inter-element referencing | |
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0..0 | |||
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1..1 | uri | "generatedBy" | |
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0..1 | Value of extension | ||
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Identifier | |||
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Reference(Genomic Study) | |||
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1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
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This structure is derived from Extension
Summary
Complex Extension: Genomic Study Analysis Input
Maturity: 2
Differential View
This structure is derived from Extension
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
---|---|---|---|---|
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0..* | Extension | Genomic Study Analysis Input | |
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Content/Rules for all slices | |||
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0..1 | Extension | GenomicStudy.analysis.input.file | |
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0..0 | |||
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1..1 | uri | "file" | |
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0..1 | Reference(Genomic Data File) | Value of extension | |
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0..1 | Extension | GenomicStudy.analysis.input.type | |
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0..0 | |||
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1..1 | uri | "type" | |
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0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
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0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
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0..0 | |||
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1..1 | uri | "generatedBy" | |
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0..1 | Value of extension | ||
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Identifier | |||
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Reference(Genomic Study) | |||
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1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
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0..0 | |||
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Snapshot View
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
---|---|---|---|---|
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0..* | Extension | Genomic Study Analysis Input | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
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0..1 | Extension | GenomicStudy.analysis.input.file | |
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0..1 | string | Unique id for inter-element referencing | |
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0..0 | |||
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1..1 | uri | "file" | |
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0..1 | Reference(Genomic Data File) | Value of extension | |
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0..1 | Extension | GenomicStudy.analysis.input.type | |
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0..1 | string | Unique id for inter-element referencing | |
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0..0 | |||
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1..1 | uri | "type" | |
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0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
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0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
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0..1 | string | Unique id for inter-element referencing | |
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0..0 | |||
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1..1 | uri | "generatedBy" | |
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0..1 | Value of extension | ||
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Identifier | |||
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Reference(Genomic Study) | |||
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1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
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Other representations of profile: CSV, Excel, Schematron
Path | Conformance | ValueSet | URI |
Extension.extension:type.value[x] | preferred | GenomicStudyDataFormatVS(a valid code from Genomic Study Data Format CodeSystem)http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vs From this IG |
Id | Grade | Path(s) | Details | Requirements |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |