Situational Awareness for Novel Epidemic Response
1.0.1 - STU Release

Situational Awareness for Novel Epidemic Response, published by HL7 International Public Health Workgroup. This is not an authorized publication; it is the continuous build for version 1.0.1). This version is based on the current content of https://github.com/HL7/fhir-saner/ and changes regularly. See the Directory of published versions

: COVID-19 Diagnostic Test - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ValueSet;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "Covid19Labs"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This value set includes codes based on the following rules:</p><ul><li>Import all the codes that are contained in <a href=\"ValueSet-SARSCoV2Labs.html\">http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1032.109</a></li><li>Include these codes as defined in <a href=\"http://loinc.org\"><code>http://loinc.org</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94307-6.html\">94307-6</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N1</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94308-4.html\">94308-4</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N2</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94309-2.html\">94309-2</a></td><td>SARS-CoV-2 (COVID-19) RNA [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94310-0.html\">94310-0</a></td><td>SARS-like coronavirus N gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94314-2.html\">94314-2</a></td><td>SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94315-9.html\">94315-9</a></td><td>SARS-related coronavirus E gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94316-7.html\">94316-7</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94500-6.html\">94500-6</a></td><td>SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94531-1.html\">94531-1</a></td><td>SARS-CoV-2 (COVID-19) RNA panel - Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94533-7.html\">94533-7</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94534-5.html\">94534-5</a></td><td>SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94559-2.html\">94559-2</a></td><td>SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94759-8.html\">94759-8</a></td><td>SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection</td></tr><tr><td><a href=\"http://details.loinc.org/LOINC/94558-4.html\">94558-4</a></td><td>SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory specimen by Rapid immunoassay</td></tr></table></li></ul></div>"
  ];
  fhir:ValueSet.url [ fhir:value "http://hl7.org/fhir/uv/saner/ValueSet/Covid19Labs"];
  fhir:ValueSet.version [ fhir:value "1.0.1"];
  fhir:ValueSet.name [ fhir:value "Covid19Labs"];
  fhir:ValueSet.title [ fhir:value "COVID-19 Diagnostic Test"];
  fhir:ValueSet.status [ fhir:value "active"];
  fhir:ValueSet.date [ fhir:value "2021-12-17T18:59:45+00:00"^^xsd:dateTime];
  fhir:ValueSet.publisher [ fhir:value "HL7 International Public Health Workgroup"];
  fhir:ValueSet.contact [
     fhir:index 0;
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "http://hl7.org/Special/committees/pher" ]     ]
  ], [
     fhir:index 1;
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "pher@lists.hl7.org" ]     ]
  ], [
     fhir:index 2;
     fhir:ContactDetail.name [ fhir:value "Keith W. Boone" ];
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "mailto:kboone@ainq.com" ]     ]
  ];
  fhir:ValueSet.description [ fhir:value "Codes for COVID-19 Diagnostic Tests"];
  fhir:ValueSet.jurisdiction [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://unstats.un.org/unsd/methods/m49/m49.htm" ];
       fhir:Coding.code [ fhir:value "001" ]     ]
  ];
  fhir:ValueSet.copyright [ fhir:value "This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc"];
  fhir:ValueSet.compose [
     fhir:ValueSet.compose.include [
       fhir:index 0;
       fhir:ValueSet.compose.include.valueSet [
         fhir:value "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1032.109";
         fhir:index 0;
         fhir:link <http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1032.109>       ]     ], [
       fhir:index 1;
       fhir:ValueSet.compose.include.system [ fhir:value "http://loinc.org" ];
       fhir:ValueSet.compose.include.concept [
         fhir:index 0;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94307-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N1" ]       ], [
         fhir:index 1;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94308-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N2" ]       ], [
         fhir:index 2;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94309-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) RNA [Presence] in Unspecified specimen by NAA with probe detection" ]       ], [
         fhir:index 3;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94310-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-like coronavirus N gene [Presence] in Unspecified specimen by NAA with probe detection" ]       ], [
         fhir:index 4;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94314-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Unspecified specimen by NAA with probe detection" ]       ], [
         fhir:index 5;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94315-9" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-related coronavirus E gene [Presence] in Unspecified specimen by NAA with probe detection" ]       ], [
         fhir:index 6;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94316-7" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by NAA with probe detection" ]       ], [
         fhir:index 7;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94500-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection" ]       ], [
         fhir:index 8;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94531-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) RNA panel - Respiratory specimen by NAA with probe detection" ]       ], [
         fhir:index 9;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94533-7" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection" ]       ], [
         fhir:index 10;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94534-5" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection" ]       ], [
         fhir:index 11;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94559-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection" ]       ], [
         fhir:index 12;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94759-8" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection" ]       ], [
         fhir:index 13;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "94558-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory specimen by Rapid immunoassay" ]       ]     ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.