FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
: Mapping Patient resource to Person OMOP Domain - TTL Representation
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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:StructureMap ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "PersonMap"] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap PersonMap</b></p><a name=\"PersonMap\"> </a><a name=\"hcPersonMap\"> </a><a name=\"PersonMap-en-US\"> </a><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/PersonMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'PersonMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Patient resource to Person OMOP Domain'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'draft'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/patient.html\" title=\"Patient\">http://hl7.org/fhir/StructureDefinition/Patient</a><span style=\"color: navy\">" </span><b>alias </b>Patient <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-Person.html\" title=\"Person OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/Person</a><span style=\"color: navy\">" </span><b>alias </b>PersonTable <b>as </b><b>target</b>\r\n\r\n<b>group </b>Person<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>PersonTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src.id<b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\"><b> -> </b></span>tgt.person_source_value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'string'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.gender<b> as </b><span style=\"color: maroon\">gender</span><span style=\"color: navy\"><b> -> </b></span>tgt.gender_source_value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">gender</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'string'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.birthDate<b> as </b><span style=\"color: maroon\">bdSrc</span><span style=\"color: navy\"><b> -> </b></span> tgt.birth_datetime = <span style=\"color: maroon\">bdSrc</span><span style=\"color: navy\">, </span> tgt.year_of_birth = evaluate<span style=\"color: navy\">(</span>bdSrc<span style=\"color: navy\">, </span>substring(0, 4)<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.month_of_birth = evaluate<span style=\"color: navy\">(</span>bdSrc<span style=\"color: navy\">, </span>substring(5, 2)<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.day_of_birth = evaluate<span style=\"color: navy\">(</span>bdSrc<span style=\"color: navy\">, </span>substring(8, 2)<span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
] ; #
fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ] ;
fhir:value [ fhir:v "brr" ]
] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ] ;
fhir:value [
fhir:v "1"^^xsd:integer ;
( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop> ] ] ) ]
] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ] ;
fhir:value [
fhir:v "draft" ;
( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop> ] ] ) ]
] ) ; #
fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureMap/PersonMap"^^xsd:anyURI] ; #
fhir:version [ fhir:v "0.1.0"] ; #
fhir:name [ fhir:v "PersonMap"] ; #
fhir:title [ fhir:v "Mapping Patient resource to Person OMOP Domain"] ; #
fhir:status [ fhir:v "draft"] ; #
fhir:date [ fhir:v "2024-08-21T19:54:58+00:00"^^xsd:dateTime] ; #
fhir:publisher [ fhir:v "HL7 International / Biomedical Research and Regulation"] ; #
fhir:contact ( [
fhir:name [ fhir:v "HL7 International / Biomedical Research and Regulation" ] ;
( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://www.hl7.org/Special/committees/rcrim" ] ] )
] ) ; #
fhir:description [ fhir:v "MappingPatientresourcetoPersonOMOPDomain"] ; #
fhir:jurisdiction ( [
( fhir:coding [
fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ] ;
fhir:code [ fhir:v "001" ] ;
fhir:display [ fhir:v "World" ] ] )
] ) ; #
fhir:structure ( [
fhir:url [
fhir:v "http://hl7.org/fhir/StructureDefinition/Patient"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Patient> ] ;
fhir:mode [ fhir:v "source" ] ;
fhir:alias [ fhir:v "Patient" ]
] [
fhir:url [
fhir:v "http://hl7.org/fhir/uv/omop/StructureDefinition/Person"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/StructureDefinition/Person> ] ;
fhir:mode [ fhir:v "target" ] ;
fhir:alias [ fhir:v "PersonTable" ]
] ) ; #
fhir:group ( [
fhir:name [ fhir:v "Person" ] ;
( fhir:input [
fhir:name [ fhir:v "src" ] ;
fhir:type [ fhir:v "Patient" ] ;
fhir:mode [ fhir:v "source" ] ] [
fhir:name [ fhir:v "tgt" ] ;
fhir:type [ fhir:v "PersonTable" ] ;
fhir:mode [ fhir:v "target" ] ] ) ;
( fhir:rule [
fhir:name [ fhir:v "id" ] ;
( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "id" ] ;
fhir:variable [ fhir:v "id" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "person_source_value" ] ;
fhir:transform [ fhir:v "cast" ] ;
( fhir:parameter [
fhir:value [ fhir:v "id" ] ] [
fhir:value [ fhir:v "string" ] ] ) ] ) ] [
fhir:name [ fhir:v "gender" ] ;
( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "gender" ] ;
fhir:variable [ fhir:v "gender" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "gender_source_value" ] ;
fhir:transform [ fhir:v "cast" ] ;
( fhir:parameter [
fhir:value [ fhir:v "gender" ] ] [
fhir:value [ fhir:v "string" ] ] ) ] ) ] [
fhir:name [ fhir:v "birthDate" ] ;
( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "birthDate" ] ;
fhir:variable [ fhir:v "bdSrc" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "birth_datetime" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [ fhir:v "bdSrc" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "year_of_birth" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
( fhir:parameter [
fhir:value [ fhir:v "bdSrc" ] ] [
fhir:value [ fhir:v "substring(0, 4)" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "month_of_birth" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
( fhir:parameter [
fhir:value [ fhir:v "bdSrc" ] ] [
fhir:value [ fhir:v "substring(5, 2)" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "day_of_birth" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
( fhir:parameter [
fhir:value [ fhir:v "bdSrc" ] ] [
fhir:value [ fhir:v "substring(8, 2)" ] ] ) ] ) ] )
] ) . #
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