FHIR to OMOP FHIR IG
0.1.0 - ci-build
FHIR to OMOP FHIR IG
0.1.0 - ci-build
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Draft | Maturity Level: 1 |
{
"resourceType" : "StructureMap",
"id" : "PersonMap",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap PersonMap</b></p><a name=\"PersonMap\"> </a><a name=\"hcPersonMap\"> </a><a name=\"PersonMap-en-US\"> </a><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/PersonMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'PersonMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Patient resource to Person OMOP Domain'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'draft'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/patient.html\" title=\"Patient\">http://hl7.org/fhir/StructureDefinition/Patient</a><span style=\"color: navy\">" </span><b>alias </b>Patient <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-Person.html\" title=\"Person OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/Person</a><span style=\"color: navy\">" </span><b>alias </b>PersonTable <b>as </b><b>target</b>\r\n\r\n<b>group </b>Person<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>PersonTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src.id<b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\"><b> -> </b></span>tgt.person_source_value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'string'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.gender<b> as </b><span style=\"color: maroon\">gender</span><span style=\"color: navy\"><b> -> </b></span>tgt.gender_source_value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">gender</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'string'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.birthDate<b> as </b><span style=\"color: maroon\">bdSrc</span><span style=\"color: navy\"><b> -> </b></span> tgt.birth_datetime = <span style=\"color: maroon\">bdSrc</span><span style=\"color: navy\">, </span> tgt.year_of_birth = evaluate<span style=\"color: navy\">(</span>bdSrc<span style=\"color: navy\">, </span>substring(0, 4)<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.month_of_birth = evaluate<span style=\"color: navy\">(</span>bdSrc<span style=\"color: navy\">, </span>substring(5, 2)<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.day_of_birth = evaluate<span style=\"color: navy\">(</span>bdSrc<span style=\"color: navy\">, </span>substring(8, 2)<span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "brr"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger" : 1,
"_valueInteger" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode" : "draft",
"_valueCode" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
}
],
"url" : "http://hl7.org/fhir/uv/omop/StructureMap/PersonMap",
"version" : "0.1.0",
"name" : "PersonMap",
"title" : "Mapping Patient resource to Person OMOP Domain",
"status" : "draft",
"date" : "2024-08-21T19:54:58+00:00",
"publisher" : "HL7 International / Biomedical Research and Regulation",
"contact" : [
{
"name" : "HL7 International / Biomedical Research and Regulation",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/rcrim"
}
]
}
],
"description" : "MappingPatientresourcetoPersonOMOPDomain",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"structure" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/Patient",
"mode" : "source",
"alias" : "Patient"
},
{
"url" : "http://hl7.org/fhir/uv/omop/StructureDefinition/Person",
"mode" : "target",
"alias" : "PersonTable"
}
],
"group" : [
{
"name" : "Person",
"input" : [
{
"name" : "src",
"type" : "Patient",
"mode" : "source"
},
{
"name" : "tgt",
"type" : "PersonTable",
"mode" : "target"
}
],
"rule" : [
{
"name" : "id",
"source" : [
{
"context" : "src",
"element" : "id",
"variable" : "id"
}
],
"target" : [
{
"context" : "tgt",
"element" : "person_source_value",
"transform" : "cast",
"parameter" : [
{
"valueId" : "id"
},
{
"valueString" : "string"
}
]
}
]
},
{
"name" : "gender",
"source" : [
{
"context" : "src",
"element" : "gender",
"variable" : "gender"
}
],
"target" : [
{
"context" : "tgt",
"element" : "gender_source_value",
"transform" : "cast",
"parameter" : [
{
"valueId" : "gender"
},
{
"valueString" : "string"
}
]
}
]
},
{
"name" : "birthDate",
"source" : [
{
"context" : "src",
"element" : "birthDate",
"variable" : "bdSrc"
}
],
"target" : [
{
"context" : "tgt",
"element" : "birth_datetime",
"transform" : "copy",
"parameter" : [
{
"valueId" : "bdSrc"
}
]
},
{
"context" : "tgt",
"element" : "year_of_birth",
"transform" : "evaluate",
"parameter" : [
{
"valueId" : "bdSrc"
},
{
"valueString" : "substring(0, 4)"
}
]
},
{
"context" : "tgt",
"element" : "month_of_birth",
"transform" : "evaluate",
"parameter" : [
{
"valueId" : "bdSrc"
},
{
"valueString" : "substring(5, 2)"
}
]
},
{
"context" : "tgt",
"element" : "day_of_birth",
"transform" : "evaluate",
"parameter" : [
{
"valueId" : "bdSrc"
},
{
"valueString" : "substring(8, 2)"
}
]
}
]
}
]
}
]
}
IG © 2023+ HL7 International / Biomedical Research and Regulation. Package hl7.fhir.uv.omop#0.1.0 based on FHIR 5.0.0. Generated 2024-08-21
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