minimal Common Oncology Data Elements (mCODE) Implementation Guide
3.0.0 - STU3 Release United States of America flag

minimal Common Oncology Data Elements (mCODE) Implementation Guide, published by HL7 International / Clinical Interoperability Council. This is not an authorized publication; it is the continuous build for version 3.0.0). This version is based on the current content of https://github.com/HL7/fhir-mCODE-ig/ and changes regularly. See the Directory of published versions

Example Observation: gx-genomic-variant-somatic-kdm5d

Generated Narrative: Observation

Resource Observation "gx-genomic-variant-somatic-kdm5d"

Profile: Genomic Variant Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: 69548-6 (LOINC#69548-6)

subject: Patient/gx-cancer-patient-adam-anyperson " ANYPERSON"

effective: 2019-04-01

performer: Practitioner/us-core-practitioner-owen-oncologist " ONCOLOGIST"

value: Present (LOINC#LA9633-4)

method: Sequencing (LOINC#LA26398-0)

component

code: 48018-6 (LOINC#48018-6)

value: KDM5D (HUGO Gene Nomenclature Committee Genes#HGNC:11115; gene#8284)

component

code: 48002-0 (LOINC#48002-0)

value: Somatic (LOINC#LA6684-0)

component

code: Molecular Consequence (To Be Determined Codes#molecular-consequence)

value: copy_number_loss (#SO:0001743)

component

code: 62374-4 (LOINC#62374-4)

value: GRCh37 (LOINC#LA14029-5)