minimal Common Oncology Data Elements (mCODE) Implementation Guide
4.0.0-ballot - STU4 Ballot United States of America flag

minimal Common Oncology Data Elements (mCODE) Implementation Guide, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of and changes regularly. See the Directory of published versions

Example Observation: gx-genomic-variant-somatic-kdm5d

Generated Narrative: Observation

Resource Observation "gx-genomic-variant-somatic-kdm5d"

Profile: Genomic Variant Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: Genetic var assess (LOINC#69548-6)

subject: Patient/gx-cancer-patient-adam-anyperson " ANYPERSON"

effective: 2019-04-01

performer: Practitioner/us-core-practitioner-owen-oncologist " ONCOLOGIST"

value: Present (LOINC#LA9633-4)

method: Sequencing (LOINC#LA26398-0)


code: Gene studied ID (LOINC#48018-6)

value: KDM5D (HUGO Gene Nomenclature Committee Genes#HGNC:11115; gene#8284)


code: Genomic source class (LOINC#48002-0)

value: Somatic (LOINC#LA6684-0)


code: Molecular Consequence (To Be Determined Codes#molecular-consequence)

value: copy_number_loss (#SO:0001743)


code: Human ref seq assembly+build (LOINC#62374-4)

value: GRCh37 (LOINC#LA14029-5)