FHIR CI-Build

This is the Continuous Integration Build of FHIR (will be incorrect/inconsistent at times).
See the Directory of published versions

Example MolecularSequence/seq-ordinal (JSON)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

Raw JSON (canonical form + also see JSON Format Specification)

MolecularSequence example for long fusion RNA molecule of FGFR and MET

{
  "resourceType": "MolecularSequence",
  "id": "seq-ordinal",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: MolecularSequence</b><a name=\"seq-ordinal\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource MolecularSequence &quot;seq-ordinal&quot; </p></div><p><b>type</b>: rna</p><blockquote><p><b>relative</b></p><p><b>coordinateSystem</b>: 1-based character counting <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA30102-0)</span></p><p><b>ordinalPosition</b>: 1</p><p><b>sequenceRange</b>: 1-2194</p><h3>StartingSequences</h3><table class=\"grid\"><tr><td>-</td><td><b>Sequence[x]</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NM_000141.5 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (#NM_000141.5)</span></td><td>1</td><td>2194</td></tr></table></blockquote><blockquote><p><b>relative</b></p><p><b>coordinateSystem</b>: 1-based character counting <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA30102-0)</span></p><p><b>ordinalPosition</b>: 2</p><p><b>sequenceRange</b>: 2194-4899</p><h3>StartingSequences</h3><table class=\"grid\"><tr><td>-</td><td><b>Sequence[x]</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NM_000245.4 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (#NM_000245.4)</span></td><td>1923</td><td>6822</td></tr></table></blockquote></div>"
  },
  "type": "rna",
  "relative": [
    {
      "coordinateSystem": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "LA30102-0",
            "display": "1-based character counting"
          }
        ]
      },
      "ordinalPosition": 1,
      "sequenceRange": {
        "low": {
          "value": 1
        },
        "high": {
          "value": 2194
        }
      },
      "startingSequence": {
        "sequenceCodeableConcept": {
          "coding": [
            {
              "system": "http://www.ncbi.nlm.nih.gov/nuccore/",
              "code": "NM_000141.5"
            }
          ]
        },
        "windowStart": 1,
        "windowEnd": 2194
      }
    },
    {
      "coordinateSystem": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "LA30102-0",
            "display": "1-based character counting"
          }
        ]
      },
      "ordinalPosition": 2,
      "sequenceRange": {
        "low": {
          "value": 2194
        },
        "high": {
          "value": 4899
        }
      },
      "startingSequence": {
        "sequenceCodeableConcept": {
          "coding": [
            {
              "system": "http://www.ncbi.nlm.nih.gov/nuccore/",
              "code": "NM_000245.4"
            }
          ]
        },
        "windowStart": 1923,
        "windowEnd": 6822
      }
    }
  ]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.