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Example Provenance/example-biocompute-object (Turtle)

Security Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Patient, Practitioner, RelatedPerson

Raw Turtle (+ also see Turtle/RDF Format Specification)

MolecularSequence recorded by a Biocompute objects

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

[a fhir:Provenance;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-biocompute-object"]; # 
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n			<p>\n				<b>Generated Narrative with Details</b>\n			</p><p>\n				<b>id</b>: example-biocompute-object</p><p>\n				<b>target</b>: <a href=\"sequence-example.html\">MolecularSequence/example</a>\n			</p><p>\n				<b>period</b>: 2017-6-6 --&gt; (ongoing)</p><p>\n				<b>recorded</b>: 2016-6-9 8:12:14</p><p>\n				<b>reason</b>: antiviral resistance detection (Details: [not stated] code null = 'null', stated as\n         'antiviral resistance detection')</p>\n			<h3>Agents</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Who</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n             stated as 'null')</td>\n					<td>\n						<a href=\"practitioner-example.html\">Practitioner/example</a>\n					</td>\n				</tr>\n			</table>\n			<h3>Entities</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Reference</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>source</td>\n					<td>\n						<a href=\"https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1\">Biocompute example</a>\n					</td>\n				</tr>\n			</table>\n		</div>"
  ]; # 
  fhir:Provenance.target [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "MolecularSequence/example/_history/1" ]
  ]; # 
  fhir:Provenance.occurredPeriod [
     fhir:Period.start [ fhir:value "2017-06-06"^^xsd:date ]
  ]; # 
  fhir:Provenance.recorded [ fhir:value "2016-06-09T08:12:14+10:00"^^xsd:dateTime]; # 
  fhir:Provenance.activity [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-DataOperation" ];
       fhir:Coding.code [ fhir:value "CREATE" ];
       fhir:Coding.display [ fhir:value "create" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "antiviral resistance detection" ]
  ]; # 
  fhir:Provenance.agent [
     fhir:index 0;
     fhir:Provenance.agent.type [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ];
         fhir:Coding.code [ fhir:value "AUT" ]
       ]
     ];
     fhir:Provenance.agent.who [
       fhir:Reference.reference [ fhir:value "Practitioner/example" ]
     ]
  ]; # 
  fhir:Provenance.entity [
     fhir:index 0;
     fhir:Provenance.entity.role [ fhir:value "source" ];
     fhir:Provenance.entity.what [
       fhir:Reference.identifier [
         fhir:Identifier.type [
           fhir:CodeableConcept.coding [
             fhir:index 0;
             fhir:Coding.system [ fhir:value "https://hive.biochemistry.gwu.edu" ];
             fhir:Coding.code [ fhir:value "biocompute" ];
             fhir:Coding.display [ fhir:value "obj.1001" ]
           ]
         ]; #      <reference value=\"https:\/\/hive.biochemistry.gwu.edu\/cgi-bin\/prd\/htscsrs\/servlet.cgi?pageid=bcoexample_1\"\/>  todo: this is not legal; fix once definition is fixed  
         fhir:Identifier.value [ fhir:value "https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1" ]
       ]
     ]
  ]] . # 

# - ontology header ------------------------------------------------------------

[a owl:Ontology;
  owl:imports fhir:fhir.ttl] .

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.