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Example MolecularDefinition/example-allele3 (Turtle)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: No defined compartments

Raw Turtle (+ also see Turtle/RDF Format Specification)

Simple Allele example 3

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/MolecularDefinition/example-allele3> a fhir:MolecularDefinition ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-allele3"] ; # 
  fhir:moleculeType [
     fhir:coding ( [
       fhir:system [ fhir:v "http://hl7.org/fhir/sequence-type"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "dna" ] ;
       fhir:display [ fhir:v "DNA Sequence" ]
     ] )
  ] ; # 
  fhir:location ( [
     fhir:sequenceLocation [
       fhir:sequenceContext [
         fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-hla000011> ;
         fhir:reference [ fhir:v "MolecularDefinition/example-sequence-hla000011" ] ;
         fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
         fhir:display [ fhir:v "Starting Sequence Resource: HLA00001" ]
       ]
     ]
  ] ) ; # 
  fhir:representation ( [
     fhir:relative [
       fhir:startingMolecule [
         fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-hla000011> ;
         fhir:reference [ fhir:v "MolecularDefinition/example-sequence-hla000011" ] ;
         fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
         fhir:display [ fhir:v "Starting Sequence Resource: HLA00001" ]
       ] ;
       fhir:edit ( [
         fhir:coordinateInterval [
           fhir:coordinateSystem [
             fhir:system [
               fhir:coding ( [
                 a loinc:LA30100-4 ;
                 fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
                 fhir:code [ fhir:v "LA30100-4" ] ;
                 fhir:display [ fhir:v "0-based interval counting" ]
               ] ) ;
               fhir:text [ fhir:v "0-based interval counting" ]
             ]
           ]
         ] ;
         fhir:replacementMolecule [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-c> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-sequence-c" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Replacement Sequence Resource: C" ]
         ] ;
         fhir:replacedMolecule [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-t> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-sequence-t" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Replaced Sequence Resource: T" ]
         ]
       ] )
     ]
  ] ) . # 

<http://hl7.org/fhir/MolecularDefinition/example-sequence-hla000011> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-sequence-c> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-sequence-t> a fhir:MolecularDefinition .

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.