INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/tewhatuora/nzhts-ig --branch uat repo DEBUG:root:Time to deadline 35879.998189 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.430757 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.408892 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.4 npm notice Changelog: npm notice Run `npm install -g npm@11.6.4` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/tewhatuora/nzhts-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35870.059807 seconds FHIR IG Publisher Version 2.0.27 (Git# 07050daf807f). Built 2025-11-28T20:03:59.255Z (6 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/tewhatuora/nzhts-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, December 4, 2025, 10:44:43 PM Coordinated Universal Time (2025-12-04T22:44:43Z) Build FHIR IG from /scratch/repo (00:00.020 / 00:00.021, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.023, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.025, 97Mb) Root directory: /scratch/repo (00:00.008 / 00:00.034, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.479 / 00:00.513, 37Mb) Load Template from tewhatuora (00:00.413 / 00:00.926, 77Mb) Load Template from fhir.base.template#current (00:00.220 / 00:01.147, 93Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.834 / 00:04.982, 140Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:04.983, 140Mb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-10380560222691249223.html Connect to Terminology Server at http://tx.fhir.org (00:30.258 / 00:35.241, 495Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#7.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#7.0.0  done. Load Package hl7.terminology.r4#7.0.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.uv.tools.r4#0.8.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.8.0  done. Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:10.159 / 00:45.401, 321Mb) Load IG (00:00.000 / 00:45.401, 321Mb) Load Content (00:00.003 / 00:45.405, 324Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.063 / 00:45.468, 329Mb) Process Loaded Resources (00:01.079 / 00:46.548, 849Mb) Generating Snapshots (00:00.813 / 00:47.361, 679Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch fhir-ig.digital.health.nz/nzhts/package-list.json for version check (00:00.053 / 00:47.414, 687Mb) Checking Language (00:00.015 / 00:47.430, 687Mb) Load Dependency Info (00:00.000 / 00:47.431, 687Mb) Load Info (00:00.001 / 00:47.432, 687Mb) Load Paths (00:00.000 / 00:47.432, 690Mb) Check R4 / R4B (00:00.000 / 00:47.432, 690Mb) Assign Comparison Ids (00:00.212 / 00:47.645, 855Mb) Propagating status (00:00.000 / 00:47.645, 855Mb) Generating Narratives (00:00.000 / 00:47.646, 855Mb) Validating Conformance Resources (00:00.083 / 00:47.729, 866Mb) Check profiles & code systems (00:02.438 / 00:50.168, 760Mb) Check realm rules (00:00.006 / 00:50.174, 760Mb) Previous Version Comparison (00:00.000 / 00:50.175, 760Mb) Checking for Bundles to sign (00:00.032 / 00:50.207, 776Mb) Validating Resources (00:00.000 / 00:50.207, 776Mb) Processing Provenance Records (00:00.000 / 00:50.208, 776Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 00:50.208, 776Mb) Generate Native Outputs (00:00.272 / 00:50.480, 792Mb) Run Template (01:31.298 / 02:21.779, 1Gb) Generate HTML Outputs (00:01.038 / 02:22.817, 1Gb) Generate Spreadsheets (00:16.739 / 02:39.557, 661Mb) Generate Summaries (00:00.000 / 02:39.557, 661Mb) Generating Summary Outputs (00:00.000 / 02:39.557, 661Mb) DB Cumulative Time invested: 00:01:28.779 Sending Usage Stats to Server (00:02.537 / 02:42.094, 542Mb) ## Memory (MB): Use = 542, Free = 18465, Total = 19008, Max = 19008 (00:00.005 / 02:42.100, 545Mb) Reclaiming memory... (00:00.000 / 02:42.100, 545Mb) ## Memory (MB): Use = 424, Free = 18583, Total = 19008, Max = 19008 (00:00.343 / 02:42.444, 435Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.005 / 02:42.449, 435Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:42.450, 435Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:42.450, 435Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:42.450, 435Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.416 / 02:42.866, 456Mb) Jekyll: Generating... (00:00.000 / 02:42.866, 456Mb) Jekyll: done in 0.976 seconds. (00:00.975 / 02:43.842, 456Mb) Checking Output HTML (00:01.051 / 02:44.893, 864Mb) Publishing Content Failed: Unable to process resource fhir-ig.digital.health.nz/nzhts/CodeSystem-36d65fe3-ec80-48ad-af71-604abd675687.html (00:04.494 / 02:49.388, 5Gb) (00:00.000 / 02:49.388, 5Gb) Use -? to get command line help (00:00.000 / 02:49.388, 5Gb) (00:00.000 / 02:49.388, 5Gb) Stack Dump (for debugging): (00:00.000 / 02:49.388, 5Gb) org.hl7.fhir.exceptions.FHIRException: Unable to process resource fhir-ig.digital.health.nz/nzhts/CodeSystem-36d65fe3-ec80-48ad-af71-604abd675687.html at org.hl7.fhir.igtools.publisher.AIProcessor.produceMDForResource(AIProcessor.java:359) at org.hl7.fhir.igtools.publisher.AIProcessor.processFolderOld(AIProcessor.java:168) at org.hl7.fhir.igtools.publisher.AIProcessor.processOldTemplates(AIProcessor.java:75) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:487) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:427) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:231) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1593) Caused by: java.nio.file.NoSuchFileException: /scratch/repo/output/fhir-ig.digital.health.nz/nzhts/CodeSystem-36d65fe3-ec80-48ad-af71-604abd675687.md at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:106) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:261) at java.base/java.nio.file.spi.FileSystemProvider.newOutputStream(FileSystemProvider.java:482) at java.base/java.nio.file.Files.newOutputStream(Files.java:227) at org.hl7.fhir.utilities.FileUtilities.stringToFile(FileUtilities.java:85) at org.hl7.fhir.utilities.FileUtilities.stringToFile(FileUtilities.java:73) at org.hl7.fhir.igtools.publisher.AIProcessor.produceMDForResource(AIProcessor.java:352) ... 6 more