SGHI FHIR Profile Implementation Guide
0.1.0 - ci-build
SGHI FHIR Profile Implementation Guide, published by Kathurima Kimathi. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/savannahghi/sil_fhir_profile_ig/ and changes regularly. See the Directory of published versions
| Official URL: https://fhir.slade360.co.ke/fhir/StructureMap/ExtractNewbornComprehensiveChart | Version: 0.1.0 | |||
| Active as of 2026-09-14 | Computable Name: ExtractNewbornComprehensiveChart | |||
The feed and fluid prescription as a CarePlan – it is a prescription the next shift has to follow, not an observation – with the volume per kilogram per day extracted as its own Observation because that is the number the prescription is actually judged against. Each monitoring round becomes vitals plus a respiratory-support panel plus a fluid panel, all taking the round's own time. The shift note carries the baby's acuity category, which is what sets how often the baby is observed at all.
/// url = 'https://fhir.slade360.co.ke/fhir/StructureMap/ExtractNewbornComprehensiveChart' /// name = 'ExtractNewbornComprehensiveChart' /// title = 'Newborn Comprehensive Chart Extraction' /// status = 'active' /// description = 'The feed and fluid prescription as a CarePlan -- it is a prescription the next shift has to follow, not an observation -- with the volume per kilogram per day extracted as its own Observation because that is the number the prescription is actually judged against. Each monitoring round becomes vitals plus a respiratory-support panel plus a fluid panel, all taking the round\'s own time. The shift note carries the baby\'s acuity category, which is what sets how often the baby is observed at all.' uses "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse" alias QR as source uses "http://hl7.org/fhir/StructureDefinition/Bundle" alias Bundle as target uses "http://hl7.org/fhir/StructureDefinition/Observation" alias Observation as target uses "http://hl7.org/fhir/StructureDefinition/CarePlan" alias CarePlan as target group ExtractNewbornComprehensiveChart(source qr : QR, target bundle : Bundle) { qr -> bundle.type = 'transaction' "setBundleType"; qr.item as g where (linkId = 'baby') then { g.item as it where ((linkId = 'baby/birth-weight') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '8339-4' "cd"; it -> cg.display = 'Birth weight Measured' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v "set"; }; } "measure_8339_4"; g.item as it where ((linkId = 'baby/admission-weight') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '29463-7' "cd"; it -> cg.display = 'Body weight' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v "set"; }; it -> obs.note as n, n.text = 'Weight on admission to the newborn unit' "note"; } "measure_29463_7"; g.item as it where ((linkId = 'baby/current-weight') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '29463-7' "cd"; it -> cg.display = 'Body weight' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v "set"; }; it -> obs.note as n, n.text = 'Weight today, from the newborn comprehensive chart' "note"; } "measure_29463_72"; g.item as it where ((linkId = 'baby/day-of-life') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'obs-day-of-life' "cd"; it -> cg.display = 'Day of life' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v "set"; }; } "measure_labour_stage_duration"; g.item as it where ((linkId = 'baby/diagnosis') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '11450-4' "cd"; it -> cg.display = 'Problem list - Reported' "dsp"; } "coding"; it -> cc.text = 'Diagnosis on the newborn comprehensive chart' "codeText"; } "code"; it.answer first as a then { a.value as txt -> obs.note as n, n.text = txt "text"; }; } "narr_11450_4"; } "babyGroup"; // ── The feed and fluid prescription, as a plan ────────────────────────── qr.item as p where ((linkId = 'prescription') and item.answer.value.exists()) -> bundle.entry as entry, entry.resource = create('CarePlan') as plan then { qr -> plan, entry then BuildCarePlanBase(qr, plan, entry) "base"; p -> plan.status = 'active' "status"; p -> plan.intent = 'order' "intent"; p -> plan.title = 'Daily feed and fluid prescription' "title"; qr.authored as t -> plan.created = t "created"; qr.encounter as e -> plan.encounter = e; qr.source as src -> plan.custodian = src "custodian"; p -> plan.category as cat then { p -> cat.coding as cg then { p -> cg.system = 'http://loinc.org' "sys"; p -> cg.code = '34800-3' "cd"; p -> cg.display = 'Nutrition and dietetics Consult note' "dsp"; } "coding"; } "category"; p.item as it where ((linkId = 'prescription/feed-type') and answer.value.exists()) then { it.answer first as a then { a.value as cv -> plan.activity as act, act.plannedActivityReference = create('Reference') as ref then { cv.display as d -> ref.display = d "feedDisplay"; } "feedActivity"; }; } "feedTypeRule"; p.item as it where ((linkId = 'prescription/route') and answer.value.exists()) then { it.answer first as a then { a.value as cv -> plan.activity as act, act.plannedActivityReference = create('Reference') as ref then { cv.display as d -> ref.display = d "routeDisplay"; } "routeActivity"; }; } "routeRule"; p.item as it where ((linkId = 'prescription/fortifier') and answer.value.exists()) then { it.answer first as a then { a.value as txt -> plan.note as n, n.text = txt "fortifierNote"; }; } "fortifierRule"; p.item as it where ((linkId = 'prescription/fortification') and answer.value.exists()) then { it.answer first as a then { a.value as txt -> plan.note as n, n.text = txt "fortificationNote"; }; } "fortificationRule"; } "feedPrescription"; qr.item as g where (linkId = 'prescription') then { g.item as it where ((linkId = 'prescription/volume-per-feed') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-volume-per-feed' "cd"; it -> cg.display = 'Volume per feed' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v "set"; }; } "measure_feeding"; g.item as it where ((linkId = 'prescription/total-24hr-volume') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '9108-2' "cd"; it -> cg.display = 'Fluid intake total 24 hour' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v "set"; }; it -> obs.note as n, n.text = 'Prescribed total, from the newborn comprehensive chart' "note"; } "measure_9108_2"; g.item as it where ((linkId = 'prescription/volume-per-kg') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-prescribed-volume-per-kilogram-per-day' "cd"; it -> cg.display = 'Prescribed volume per kilogram per day' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = create('Quantity') as q then { v -> q.value = v "qValue"; v -> q.unit = 'mL/kg/day' "qUnit"; v -> q.system = 'http://unitsofmeasure.org' "qSystem"; v -> q.code = 'mL/kg' "qCode"; } "quantity"; }; } "measureq_feeding"; g.item as it where ((linkId = 'prescription/frequency-hours') and answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-feed-frequency-in-hours' "cd"; it -> cg.display = 'Feed frequency in hours' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v "set"; }; } "measure_feeding2"; } "prescriptionMeasures"; // ── The IV fluid nursing plan ─────────────────────────────────────────── qr.item as g where ((linkId = 'iv-plan') and item.answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; g -> obs.code as cc then { g -> cc.coding as cg then { g -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; g -> cg.code = 'feeding-intravenous-fluid-nursing-plan' "cd"; g -> cg.display = 'Intravenous fluid nursing plan' "dsp"; } "coding"; } "code"; g.item as it where ((linkId = 'iv-plan/rate') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-iv-fluid-rate' "cd"; it -> cg.display = 'IV fluid rate' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_feeding_iv_fluid_rate"; g.item as it where ((linkId = 'iv-plan/drops-per-minute') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-iv-drops-per-minute' "cd"; it -> cg.display = 'IV drops per minute' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_feeding_iv_drops_per_minute"; g.item as it where ((linkId = 'iv-plan/planned-volume') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-iv-volume-planned-over-24-hours' "cd"; it -> cg.display = 'IV volume planned over 24 hours' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_feeding_iv_volume_planned_over_24_hours"; } "ivFluidPlan"; // ── Interventions in place ────────────────────────────────────────────── qr.item as g where ((linkId = 'interventions') and item.answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetProcedureCategory(qr, obs) "category"; g -> obs.code as cc then { g -> cc.coding as cg then { g -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; g -> cg.code = 'newborn-intervention-newborn-interventions-in-place' "cd"; g -> cg.display = 'Newborn interventions in place' "dsp"; } "coding"; } "code"; g.item as it where ((linkId = 'interventions/cpap') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-cpap-in-use' "cd"; it -> cg.display = 'CPAP in use' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_cpap_in_use"; g.item as it where ((linkId = 'interventions/cpap-hours') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-hours-on-cpap' "cd"; it -> cg.display = 'Hours on CPAP' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_newborn_intervention_hours_on_cpap"; g.item as it where ((linkId = 'interventions/oxygen') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-oxygen-in-use' "cd"; it -> cg.display = 'Oxygen in use' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_oxygen_in_use"; g.item as it where ((linkId = 'interventions/phototherapy') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-phototherapy-in-use' "cd"; it -> cg.display = 'Phototherapy in use' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_phototherapy_in_use"; g.item as it where ((linkId = 'interventions/blood-transfusion') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-blood-transfusion-in-progress' "cd"; it -> cg.display = 'Blood transfusion in progress' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_blood_transfusion_in_progress"; g.item as it where ((linkId = 'interventions/incubator') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-incubator-in-use' "cd"; it -> cg.display = 'Incubator in use' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_incubator_in_use"; g.item as it where ((linkId = 'interventions/kangaroo-mother-care') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-kangaroo-mother-care' "cd"; it -> cg.display = 'Kangaroo mother care' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_kangaroo_mother_care"; g.item as it where ((linkId = 'interventions/monitoring-frequency-hours') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-monitoring-frequency-in-hours' "cd"; it -> cg.display = 'Monitoring frequency in hours' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_newborn_intervention_monitoring_frequency_in_hours"; } "interventionsPanel"; // ── One monitoring round ──────────────────────────────────────────────── qr.item as g where (linkId = 'round') then { g.item as it where ((linkId = 'round/temperature') and answer.value.ofType(Quantity).exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '8310-5' "cd"; it -> cg.display = 'Body temperature' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v; }; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "nbvital_8310_5"; g.item as it where ((linkId = 'round/pulse') and answer.value.ofType(Quantity).exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '8867-4' "cd"; it -> cg.display = 'Heart rate' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v; }; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "nbvital_8867_4"; g.item as it where ((linkId = 'round/respiratory-rate') and answer.value.ofType(Quantity).exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '9279-1' "cd"; it -> cg.display = 'Respiratory rate' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v; }; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "nbvital_9279_1"; g.item as it where ((linkId = 'round/oxygen-saturation') and answer.value.ofType(Quantity).exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetVitalSignsCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '59408-5' "cd"; it -> cg.display = 'Oxygen saturation in Arterial blood by Pulse oximetry' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v; }; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "nbvital_59408_5"; g.item as it where ((linkId = 'round/blood-sugar') and answer.value.ofType(Quantity).exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetLaboratoryCategory(qr, obs) "category"; it -> obs.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'http://loinc.org' "sys"; it -> cg.code = '15074-8' "cd"; it -> cg.display = 'Glucose [Moles/volume] in Blood' "dsp"; } "coding"; } "code"; it.answer first as a then { a.value as v -> obs.value = v; }; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "roundBloodSugar"; // Respiratory support as a panel. The distress grade only means something // beside the CPAP pressure and the FiO2 that are holding it there. g where (item.where(linkId = 'round/respiratory-distress').answer.value.exists() or item.where(linkId = 'round/cpap-pressure').answer.value.exists() or item.where(linkId = 'round/fio2').answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetExamCategory(qr, obs) "category"; g -> obs.code as cc then { g -> cc.coding as cg then { g -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; g -> cg.code = 'newborn-intervention-respiratory-support-on-a-newborn-round' "cd"; g -> cg.display = 'Respiratory support on a newborn round' "dsp"; } "coding"; } "code"; g.item as it where ((linkId = 'round/respiratory-distress') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-respiratory-distress-grade' "cd"; it -> cg.display = 'Respiratory distress grade' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_respiratory_distress_grade"; g.item as it where ((linkId = 'round/cpap-pressure') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-cpap-pressure' "cd"; it -> cg.display = 'CPAP pressure' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_newborn_intervention_cpap_pressure"; g.item as it where ((linkId = 'round/fio2') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-inspired-oxygen-fraction' "cd"; it -> cg.display = 'Inspired oxygen fraction' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_newborn_intervention_inspired_oxygen_fraction"; g.item as it where ((linkId = 'round/flow') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-oxygen-flow' "cd"; it -> cg.display = 'Oxygen flow' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_newborn_intervention_oxygen_flow"; g.item as it where ((linkId = 'round/incubator-oxygen-port') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-incubator-oxygen-port-in-use' "cd"; it -> cg.display = 'Incubator oxygen port in use' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_newborn_intervention_incubator_oxygen_port_in_use"; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "respiratorySupport"; g.item as f where ((linkId = 'round/fluid') and item.answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; f -> obs.code as cc then { f -> cc.coding as cg then { f -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; f -> cg.code = 'feeding-fluid-given-on-a-newborn-round' "cd"; f -> cg.display = 'Fluid given on a newborn round' "dsp"; } "coding"; } "code"; f.item as it where ((linkId = 'round/fluid/ebm') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-expressed-breast-milk-given' "cd"; it -> cg.display = 'Expressed breast milk given' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_feeding_expressed_breast_milk_given"; f.item as it where ((linkId = 'round/fluid/formula') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-formula-given' "cd"; it -> cg.display = 'Formula given' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_feeding_formula_given"; f.item as it where ((linkId = 'round/fluid/iv') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-intravenous-volume-given' "cd"; it -> cg.display = 'Intravenous volume given' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_feeding_intravenous_volume_given"; f.item as it where ((linkId = 'round/fluid/iv-line-working') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'feeding-iv-line-working' "cd"; it -> cg.display = 'IV line working' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_feeding_iv_line_working"; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "fluidGiven"; g.item as o where ((linkId = 'round/output') and item.answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; o -> obs.code as cc then { o -> cc.coding as cg then { o -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; o -> cg.code = 'fluid-balance-output-on-a-newborn-round' "cd"; o -> cg.display = 'Output on a newborn round' "dsp"; } "coding"; } "code"; o.item as it where ((linkId = 'round/output/vomit') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'fluid-balance-vomited' "cd"; it -> cg.display = 'Vomited' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_fluid_balance_vomited"; o.item as it where ((linkId = 'round/output/urine') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'fluid-balance-passed-urine' "cd"; it -> cg.display = 'Passed urine' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_fluid_balance_passed_urine"; o.item as it where ((linkId = 'round/output/stool') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'fluid-balance-passed-stool' "cd"; it -> cg.display = 'Passed stool' "dsp"; } "coding"; } "code"; it -> comp then SetComponentCodedValue(it, comp) "value"; } "comp_fluid_balance_passed_stool"; g -> obs then SetNewbornRoundTime(g, obs) "roundTime"; } "roundOutput"; } "roundRows"; // ── The shift note and the acuity category ────────────────────────────── // The category is why it is extracted rather than left as a note: A, B or C // sets how often the baby is observed, and a downgrade from A to C is a // clinical decision somebody made. qr.item as s where ((linkId = 'shift') and item.where(linkId = 'shift/category').answer.value.exists()) -> bundle.entry as entry, entry.resource = create('Observation') as obs then { qr -> obs, entry then BuildObsBase(qr, obs, entry) "base"; qr -> obs then SetSurveyCategory(qr, obs) "category"; s -> obs.code as cc then { s -> cc.coding as cg then { s -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; s -> cg.code = 'newborn-intervention-newborn-acuity-category' "cd"; s -> cg.display = 'Newborn acuity category' "dsp"; } "coding"; } "code"; s.item as it where (linkId = 'shift/category') then { it.answer first as a then { a.value as cv -> obs.value = create('CodeableConcept') as vc then { cv -> vc.coding = cv "valueCoding"; cv.display as d -> vc.text = d "valueText"; } "codedValue"; }; } "categoryRule"; s.item as it where ((linkId = 'shift/name') and answer.value.exists()) -> obs.component as comp then { it -> comp.code as cc then { it -> cc.coding as cg then { it -> cg.system = 'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem' "sys"; it -> cg.code = 'newborn-intervention-shift' "cd"; it -> cg.display = 'Shift' "dsp"; } "coding"; } "code"; it -> comp then SetComponentValue(it, comp) "value"; } "comp_newborn_intervention_shift"; s.item as it where (linkId = 'shift/notes') then { it.answer first as a then { a.value as txt -> obs.note as n, n.text = txt "text"; }; } "note"; s.item as it where ((linkId = 'shift/nurse') and answer.value.exists()) then { it.answer first as a then { a.value as ref -> obs.performer = ref "performer"; }; } "nurseRule"; } "shiftNote"; } group SetNewbornRoundTime(source g, target obs : Observation) { g.item as it where ((linkId = 'round/time') and answer.value.exists()) then { it.answer first as a then { a.value as t -> obs.note as n, n.text = 'Taken at the clock time recorded for this round on the chart' "timeNote"; }; } "roundTimeRule"; g.item as it where ((linkId = 'round/completed-by') and answer.value.exists()) then { it.answer first as a then { a.value as ref -> obs.performer = ref "performer"; }; } "completedByRule"; } // ───────────────────────────────────────────────────────────────────────────── // Shared scaffolding. Repeated in each map rather than imported: the transform // engine resolves `imports` against whatever StructureMaps happen to be on the // server, and a form that stops extracting because a shared map was not // uploaded is a worse failure than a duplicated group. // Two notes on what the publisher's StructureMap validator says about this file. // Source parameters below are left untyped on purpose. Writing `: Element` makes // the validator compare QuestionnaireResponse.item against the literal 'Element' // and report them as incompatible with each other, which is noise, not a finding. // `evaluate(context, expression)` is flagged as "takes 1 parameter but 2 were // found". Leave it. The FML parser in the same jar refuses the one-argument form // outright -- it wants a parameter, a comma, then the FHIRPath -- so the // publisher is objecting to what its own compiler emits. Two arguments is the // only form that compiles, and it is what the R5 transform engine executes. // ───────────────────────────────────────────────────────────────────────────── group BuildObsBase(source qr : QR, target obs : Observation, target entry) { qr -> obs then SetResponseProvenance(qr, obs) "responseProvenance"; qr -> obs.id = uuid() then SetObservationFullUrl(obs, entry) "idAndFullUrl"; qr -> entry.request as request then { qr -> request.method = 'POST' "requestMethod"; qr -> request.url = 'Observation' "requestUrl"; } "entryRequest"; qr -> obs.status = 'final' "status"; qr.subject as s -> obs.subject = s; qr.encounter as e -> obs.encounter = e; qr.authored as t -> obs.effective = t "effective"; qr.source as src -> obs.performer = src "performerFromSource"; qr where (source.exists().not()) then { qr.author as a -> obs.performer = a "performerFromAuthor"; } "performerFallback"; // A stored response's id already reads "QuestionnaireResponse/<id>", so it is // a relative reference as it stands. The hasValue() guard is what stops an // unsaved response -- one posted straight to $extract rather than saved first // -- from writing "QuestionnaireResponse/null" into the record. qr.id as qid where ($this.hasValue()) -> obs.derivedFrom = create('Reference') as ref, ref.reference = qid "linkQuestionnaireResponse"; } group SetObservationFullUrl(source obs : Observation, target entry) { obs.id as id -> entry.fullUrl = append('https://fhir.slade360.co.ke/fhir/Observation/', id) "assignFullUrl"; } // The two answer shapes a component can carry. Both read the answer through the // untyped `.value` accessor: reading `valueCoding` or `valueQuantity` by its // typed property name fails at transform time on HAPI R5 with "Attempt to read // invalid property ... on QuestionnaireResponse.item.answer". group SetComponentCodedValue(source it, target comp) { it.answer first as a then { a.value as cv -> comp.value = create('CodeableConcept') as cc then { cv -> cc.coding = cv "valueCoding"; cv.display as d -> cc.text = d "valueText"; } "codedValue"; } "componentAnswer"; } group SetComponentValue(source it, target comp) { it.answer first as a then { a.value as v -> comp.value = v "plainValue"; } "componentAnswer"; } group SetSurveyCategory(source qr : QR, target obs : Observation) { qr -> obs.category as cat then { qr -> cat.coding as coding then { qr -> coding.system = 'http://terminology.hl7.org/CodeSystem/observation-category' "categorySystem"; qr -> coding.code = 'survey' "categoryCode"; qr -> coding.display = 'Survey' "categoryDisplay"; } "categoryCoding"; } "category"; } group SetVitalSignsCategory(source qr : QR, target obs : Observation) { qr -> obs.category as cat then { qr -> cat.coding as coding then { qr -> coding.system = 'http://terminology.hl7.org/CodeSystem/observation-category' "categorySystem"; qr -> coding.code = 'vital-signs' "categoryCode"; qr -> coding.display = 'Vital Signs' "categoryDisplay"; } "categoryCoding"; } "category"; } group SetExamCategory(source qr : QR, target obs : Observation) { qr -> obs.category as cat then { qr -> cat.coding as coding then { qr -> coding.system = 'http://terminology.hl7.org/CodeSystem/observation-category' "categorySystem"; qr -> coding.code = 'exam' "categoryCode"; qr -> coding.display = 'Exam' "categoryDisplay"; } "categoryCoding"; } "category"; } group SetLaboratoryCategory(source qr : QR, target obs : Observation) { qr -> obs.category as cat then { qr -> cat.coding as coding then { qr -> coding.system = 'http://terminology.hl7.org/CodeSystem/observation-category' "categorySystem"; qr -> coding.code = 'laboratory' "categoryCode"; qr -> coding.display = 'Laboratory' "categoryDisplay"; } "categoryCoding"; } "category"; } group SetProcedureCategory(source qr : QR, target obs : Observation) { qr -> obs.category as cat then { qr -> cat.coding as coding then { qr -> coding.system = 'http://terminology.hl7.org/CodeSystem/observation-category' "categorySystem"; qr -> coding.code = 'procedure' "categoryCode"; qr -> coding.display = 'Procedure' "categoryDisplay"; } "categoryCoding"; } "category"; } group BuildCarePlanBase(source qr : QR, target r : CarePlan, target entry) { qr -> r then SetResponseProvenance(qr, r) "responseProvenance"; qr -> r.id = uuid() then SetCarePlanFullUrl(r, entry) "idAndFullUrl"; qr -> entry.request as request then { qr -> request.method = 'POST' "requestMethod"; qr -> request.url = 'CarePlan' "requestUrl"; } "entryRequest"; qr.subject as s -> r.subject = s; } group SetCarePlanFullUrl(source r : CarePlan, target entry) { r.id as id -> entry.fullUrl = append('https://fhir.slade360.co.ke/fhir/CarePlan/', id) "assignFullUrl"; } // ── Provenance and tenancy ─────────────────────────────────────────────────── // Two tags on everything this map creates. The first says which questionnaire // produced it, so a form that reopens mid-admission recalls its own earlier // entries and not another form's. The second copies the tenant tags off the // response, because nothing else on the path puts them there. // The code is the form's document type, not the questionnaire's id: every // environment mints its own ids, and there is only one set of maps, so an id // here would tie the tag to whichever environment stamped it. // ── Provenance and tenancy ─────────────────────────────────────────────────── group SetResponseProvenance(source qr : QR, target r) { qr -> r.meta as m then { qr -> m.tag as t then { qr -> t.system = 'http://slade360edi.com/questionnaire-provenance' "provenanceSystem"; qr -> t.code = 'newborn-comprehensive-chart' "provenanceCode"; qr -> t.display = 'Newborn comprehensive chart' "provenanceDisplay"; } "provenanceTag"; } "provenanceMeta"; // Every tag the response carries, onto the resource. `meta` is 0..1, so this // lands on the same meta the rule above created rather than a second one. qr.meta as qm then { qm.tag as qt -> r.meta as m, m.tag = qt "copyTag"; } "tenantTags"; }