SGHI FHIR Profile Implementation Guide
0.1.0 - ci-build
SGHI FHIR Profile Implementation Guide, published by Kathurima Kimathi. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/savannahghi/sil_fhir_profile_ig/ and changes regularly. See the Directory of published versions
| Active as of 2026-09-14 |
{
"resourceType" : "StructureMap",
"id" : "ExtractCoagulationProfileRequisition",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap ExtractCoagulationProfileRequisition</b></p><a name=\"ExtractCoagulationProfileRequisition\"> </a><a name=\"hcExtractCoagulationProfileRequisition\"> </a><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'https://fhir.slade360.co.ke/fhir/StructureMap/ExtractCoagulationProfileRequisition'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'ExtractCoagulationProfileRequisition'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Coagulation Profile Requisition Extraction'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>\r\n<span style=\"color: #cc00cc\">/// <b>description</b> = </span><span style=\"color: blue\">'PT under LOINC 5964-2, INR under 6301-6 and APTT under 3173-2, each carrying the reference range printed on the form. The INR range is the reason this map needs a question answered: the printed 2.0 to 3.5 applies only to a patient on stabilised oral anticoagulant therapy, so it is attached only when the form says yes. Attaching it unconditionally would flag every patient not on warfarin as out of range, which is the opposite of useful.'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/questionnaireresponse.html\" title=\"QuestionnaireResponse\">http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse</a><span style=\"color: navy\">" </span><b>alias </b>QR <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/bundle.html\" title=\"Bundle\">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style=\"color: navy\">" </span><b>alias </b>Bundle <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/observation.html\" title=\"Observation\">http://hl7.org/fhir/StructureDefinition/Observation</a><span style=\"color: navy\">" </span><b>alias </b>Observation <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/servicerequest.html\" title=\"ServiceRequest\">http://hl7.org/fhir/StructureDefinition/ServiceRequest</a><span style=\"color: navy\">" </span><b>alias </b>ServiceRequest <b>as </b><b>target</b>\r\n\r\n<b>group </b>ExtractCoagulationProfileRequisition<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QR, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>bundle.type = <span style=\"color: blue\">'transaction'</span> <i>"setBundleType"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'ServiceRequest'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">sr</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span> sr<span style=\"color: navy\">, </span> entry<b> then </b>BuildServiceRequestBase<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">sr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"base"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>sr.status = <span style=\"color: blue\">'active'</span> <i>"status"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>sr.intent = <span style=\"color: blue\">'order'</span> <i>"intent"</i><span style=\"color: navy\">;</span>\r\n qr.encounter<b> as </b><span style=\"color: maroon\">e</span><span style=\"color: navy\"><b> -> </b></span>sr.encounter = <span style=\"color: maroon\">e</span><span style=\"color: navy\">;</span>\r\n qr.authored<b> as </b><span style=\"color: maroon\">t</span><span style=\"color: navy\"><b> -> </b></span>sr.authoredOn = <span style=\"color: maroon\">t</span> <i>"authoredOn"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>sr.category<b> as </b><span style=\"color: maroon\">cat</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>cat.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'http://snomed.info/sct'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'108252007'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'Laboratory procedure'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">A local code. LOINC publishes every individual coagulation analyte but</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">nothing for the profile as ordered -- the panel codes that look right</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">(34530-4, 34530-6) are an ABO and Rh group panel -- and a guessed panel</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">code on a laboratory order is worse than a local one that says exactly</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">what the form asks for.</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span> sr.code<b> as </b><span style=\"color: maroon\">cr</span><span style=\"color: navy\">, </span> cr.concept<b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>cc.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'anticoagulation-coagulation-profile'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'Coagulation profile'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n qr.item<b> as </b><span style=\"color: maroon\">g</span><b> where </b><span style=\"color: navy\">(</span>linkId = 'request'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'request/requester') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\"><b> -> </b></span>sr.requester = <span style=\"color: maroon\">ref</span> <i>"requester"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"requesterRule"</i><span style=\"color: navy\">;</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'request/urgency') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">cv</span><b> where </b><span style=\"color: navy\">(</span>code = 'lab-urgency-desperate'<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span>sr.priority = <span style=\"color: blue\">'stat'</span> <i>"stat"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"desperateRule"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">cv</span><b> where </b><span style=\"color: navy\">(</span>code = 'lab-urgency-urgent'<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span>sr.priority = <span style=\"color: blue\">'urgent'</span> <i>"urgent"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"urgentRule"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">cv</span><b> where </b><span style=\"color: navy\">(</span>code = 'lab-urgency-routine'<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span>sr.priority = <span style=\"color: blue\">'routine'</span> <i>"routine"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"routineRule"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"urgencyRule"</i><span style=\"color: navy\">;</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'request/specimen') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">txt</span><span style=\"color: navy\"><b> -> </b></span> sr.specimen = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">spref</span><span style=\"color: navy\">, </span> spref.display = <span style=\"color: maroon\">txt</span> <i>"specimen"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"specimenRule"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"requestGroup"</i><span style=\"color: navy\">;</span>\r\n qr.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'clinical-history') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">txt</span><span style=\"color: navy\"><b> -> </b></span> sr.note<b> as </b><span style=\"color: maroon\">n</span><span style=\"color: navy\">, </span> n.text = <span style=\"color: maroon\">txt</span> <i>"historyNote"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"historyRule"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coagulationRequest"</i><span style=\"color: navy\">;</span>\r\n qr.item<b> as </b><span style=\"color: maroon\">g</span><b> where </b><span style=\"color: navy\">(</span>linkId = 'results'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">── Prothrombin time ──────────────────────────────────────────────────</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'results/prothrombin-time') and answer.value.ofType(Quantity).exists()<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span> obs<span style=\"color: navy\">, </span> entry<b> then </b>BuildObsBase<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"base"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetLaboratoryCategory<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.code<b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cc.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'5964-2'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'Prothrombin time (PT) in Blood by Coagulation assay'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>obs.value = <span style=\"color: maroon\">v</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.referenceRange<b> as </b><span style=\"color: maroon\">rr</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>rr.low = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">lo</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>lo.value = <span style=\"color: blue\">'11'</span> <i>"loValue"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>lo.unit = <span style=\"color: blue\">'seconds'</span> <i>"loUnit"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>lo.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"loSystem"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>lo.code = <span style=\"color: blue\">'s'</span> <i>"loCode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"low"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>rr.high = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">hi</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>hi.value = <span style=\"color: blue\">'16'</span> <i>"hiValue"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>hi.unit = <span style=\"color: blue\">'seconds'</span> <i>"hiUnit"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>hi.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"hiSystem"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>hi.code = <span style=\"color: blue\">'s'</span> <i>"hiCode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"high"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>rr.text = <span style=\"color: blue\">'Reference range printed on the coagulation profile form'</span> <i>"rrText"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"referenceRange"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetCoagulationContext<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"context"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"prothrombinTime"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">── APTT ──────────────────────────────────────────────────────────────</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'results/aptt') and answer.value.ofType(Quantity).exists()<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span> obs<span style=\"color: navy\">, </span> entry<b> then </b>BuildObsBase<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"base"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetLaboratoryCategory<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.code<b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cc.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'3173-2'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'aPTT in Blood by Coagulation assay'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>obs.value = <span style=\"color: maroon\">v</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.referenceRange<b> as </b><span style=\"color: maroon\">rr</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>rr.low = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">lo</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>lo.value = <span style=\"color: blue\">'26.1'</span> <i>"loValue"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>lo.unit = <span style=\"color: blue\">'seconds'</span> <i>"loUnit"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>lo.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"loSystem"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>lo.code = <span style=\"color: blue\">'s'</span> <i>"loCode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"low"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>rr.high = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">hi</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>hi.value = <span style=\"color: blue\">'36.3'</span> <i>"hiValue"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>hi.unit = <span style=\"color: blue\">'seconds'</span> <i>"hiUnit"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>hi.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"hiSystem"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>hi.code = <span style=\"color: blue\">'s'</span> <i>"hiCode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"high"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>rr.text = <span style=\"color: blue\">'Reference range printed on the coagulation profile form'</span> <i>"rrText"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"referenceRange"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetCoagulationContext<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"context"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"aptt"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">── INR ───────────────────────────────────────────────────────────────</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Observation.value[x] has no decimal choice, so the INR -- a bare ratio</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">with no unit -- has to be built as a Quantity with UCUM's unity code.</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'results/inr') and answer.value.exists()<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span> obs<span style=\"color: navy\">, </span> entry<b> then </b>BuildObsBase<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"base"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetLaboratoryCategory<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.code<b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cc.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'6301-6'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'INR in Platelet poor plasma by Coagulation assay'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>obs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">q</span><b> then</b><span style=\"color: navy\"> {\r\n</span> v<span style=\"color: navy\"><b> -> </b></span>q.value = <span style=\"color: maroon\">v</span> <i>"qValue"</i><span style=\"color: navy\">;</span>\r\n v<span style=\"color: navy\"><b> -> </b></span>q.unit = <span style=\"color: blue\">'ratio'</span> <i>"qUnit"</i><span style=\"color: navy\">;</span>\r\n v<span style=\"color: navy\"><b> -> </b></span>q.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"qSystem"</i><span style=\"color: navy\">;</span>\r\n v<span style=\"color: navy\"><b> -> </b></span>q.code = <span style=\"color: blue\">'1'</span> <i>"qCode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"quantity"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">The printed 2.0-3.5 range attaches only where the patient is on</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">stabilised oral anticoagulants. For anyone else it is not a target and</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">attaching it would mark every unanticoagulated patient abnormal.</span>\r\n qr.item<b> as </b><span style=\"color: maroon\">ac</span><b> where </b><span style=\"color: navy\">(</span>linkId = 'anticoagulation'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> ac.item<b> as </b><span style=\"color: maroon\">oa</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'anticoagulation/on-oral-anticoagulant') and (answer.value.ofType(Coding).code = 'Y')<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> oa<span style=\"color: navy\"><b> -> </b></span>obs.referenceRange<b> as </b><span style=\"color: maroon\">rr</span><b> then</b><span style=\"color: navy\"> {\r\n</span> oa<span style=\"color: navy\"><b> -> </b></span>rr.low = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">lo</span><b> then</b><span style=\"color: navy\"> {\r\n</span> oa<span style=\"color: navy\"><b> -> </b></span>lo.value = <span style=\"color: blue\">'2.0'</span> <i>"loValue"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>lo.unit = <span style=\"color: blue\">'ratio'</span> <i>"loUnit"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>lo.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"loSystem"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>lo.code = <span style=\"color: blue\">'1'</span> <i>"loCode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"low"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>rr.high = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">hi</span><b> then</b><span style=\"color: navy\"> {\r\n</span> oa<span style=\"color: navy\"><b> -> </b></span>hi.value = <span style=\"color: blue\">'3.5'</span> <i>"hiValue"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>hi.unit = <span style=\"color: blue\">'ratio'</span> <i>"hiUnit"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>hi.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"hiSystem"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>hi.code = <span style=\"color: blue\">'1'</span> <i>"hiCode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"high"</i><span style=\"color: navy\">;</span>\r\n oa<span style=\"color: navy\"><b> -> </b></span>rr.text = <span style=\"color: blue\">'Therapeutic range for a patient on stabilised oral anticoagulant therapy, as printed on the form'</span> <i>"rrText"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"referenceRange"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"onAnticoagulantRule"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"anticoagulationGroup"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetCoagulationContext<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"context"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"inr"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"resultsGroup"</i><span style=\"color: navy\">;</span>\r\n qr.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'clinical-history') and answer.value.exists()<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span> obs<span style=\"color: navy\">, </span> entry<b> then </b>BuildObsBase<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"base"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetSurveyCategory<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.code<b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cc.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'55752-0'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'Clinical information'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cc.text = <span style=\"color: blue\">'Clinical history given to the coagulation laboratory'</span> <i>"codeText"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">txt</span><span style=\"color: navy\"><b> -> </b></span> obs.note<b> as </b><span style=\"color: maroon\">n</span><span style=\"color: navy\">, </span> n.text = <span style=\"color: maroon\">txt</span> <i>"text"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"narr_55752_0"</i><span style=\"color: navy\">;</span>\r\n qr.item<b> as </b><span style=\"color: maroon\">g</span><b> where </b><span style=\"color: navy\">(</span>linkId = 'anticoagulation'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'anticoagulation/on-oral-anticoagulant') and answer.value.exists()<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span> obs<span style=\"color: navy\">, </span> entry<b> then </b>BuildObsBase<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"base"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetSurveyCategory<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.code<b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cc.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'anticoagulation-on-stabilised-oral-anticoagulant-therapy'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'On stabilised oral anticoagulant therapy'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">cv</span><span style=\"color: navy\"><b> -> </b></span>obs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> cv<span style=\"color: navy\"><b> -> </b></span>cc.coding = <span style=\"color: maroon\">cv</span> <i>"valueCoding"</i><span style=\"color: navy\">;</span>\r\n cv.display<b> as </b><span style=\"color: maroon\">d</span><span style=\"color: navy\"><b> -> </b></span>cc.text = <span style=\"color: maroon\">d</span> <i>"valueText"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"codedValue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coded_anticoagulation"</i><span style=\"color: navy\">;</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'anticoagulation/agent') and answer.value.exists()<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span> obs<span style=\"color: navy\">, </span> entry<b> then </b>BuildObsBase<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"base"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetSurveyCategory<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>obs.code<b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cc.coding<b> as </b><span style=\"color: maroon\">cg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it<span style=\"color: navy\"><b> -> </b></span>cg.system = <span style=\"color: blue\">'https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem'</span> <i>"sys"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.code = <span style=\"color: blue\">'anticoagulation-anticoagulant-agent-and-dose'</span> <i>"cd"</i><span style=\"color: navy\">;</span>\r\n it<span style=\"color: navy\"><b> -> </b></span>cg.display = <span style=\"color: blue\">'Anticoagulant agent and dose'</span> <i>"dsp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">txt</span><span style=\"color: navy\"><b> -> </b></span> obs.note<b> as </b><span style=\"color: maroon\">n</span><span style=\"color: navy\">, </span> n.text = <span style=\"color: maroon\">txt</span> <i>"text"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"narr_anticoagulation_anticoagulant_agent_and_dose"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"anticoagulationObs"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SetCoagulationContext<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QR, <b>target</b> <span style=\"color: maroon\">obs</span><span style=\"color: navy\"> : </span>Observation<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr.item<b> as </b><span style=\"color: maroon\">g</span><b> where </b><span style=\"color: navy\">(</span>linkId = 'laboratory'<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'laboratory/collected-at') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>obs.effective = <span style=\"color: maroon\">v</span> <i>"effective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"collectedAtRule"</i><span style=\"color: navy\">;</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'laboratory/tested-by') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\"><b> -> </b></span>obs.performer = <span style=\"color: maroon\">ref</span> <i>"testedBy"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"testedByRule"</i><span style=\"color: navy\">;</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'laboratory/dispatched-at') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>obs.issued = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'instant'</span><span style=\"color: navy\">)</span> <i>"issued"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"dispatchedRule"</i><span style=\"color: navy\">;</span>\r\n g.item<b> as </b><span style=\"color: maroon\">it</span><b> where </b><span style=\"color: navy\">(</span>(linkId = 'laboratory/lab-registration-number') and answer.value.exists()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">txt</span><span style=\"color: navy\"><b> -> </b></span>obs.identifier<b> as </b><span style=\"color: maroon\">ident</span><b> then</b><span style=\"color: navy\"> {\r\n</span> txt<span style=\"color: navy\"><b> -> </b></span>ident.system = <span style=\"color: blue\">'https://fhir.slade360.co.ke/fhir/identifier/lab-registration'</span> <i>"identSystem"</i><span style=\"color: navy\">;</span>\r\n txt<span style=\"color: navy\"><b> -> </b></span>ident.value = <span style=\"color: maroon\">txt</span> <i>"identValue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"identifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labRegRule"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"laboratoryGroup"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">─────────────────────────────────────────────────────────────────────────────</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">Shared scaffolding. Repeated in each map rather than imported: the transform</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">engine resolves `imports` against whatever StructureMaps happen to be on the</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">server, and a form that stops extracting because a shared map was not</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">uploaded is a worse failure than a duplicated group.</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">Two notes on what the publisher's StructureMap validator says about this file.</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">Source parameters below are left untyped on purpose. Writing `: Element` makes</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">the validator compare QuestionnaireResponse.item against the literal 'Element'</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">and report them as incompatible with each other, which is noise, not a finding.</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">`evaluate(context, expression)` is flagged as "takes 1 parameter but 2 were</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">found". Leave it. The FML parser in the same jar refuses the one-argument form</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">outright -- it wants a parameter, a comma, then the FHIRPath -- so the</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">publisher is objecting to what its own compiler emits. Two arguments is the</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">only form that compiles, and it is what the R5 transform engine executes.</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">─────────────────────────────────────────────────────────────────────────────</span>\r\n<b>group </b>BuildObsBase<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QR, <b>target</b> <span style=\"color: maroon\">obs</span><span style=\"color: navy\"> : </span>Observation, <b>target</b> <span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>obs<b> then </b>SetResponseProvenance<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">)</span> <i>"responseProvenance"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> then </b>SetObservationFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">obs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"idAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>entry.request<b> as </b><span style=\"color: maroon\">request</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>request.method = <span style=\"color: blue\">'POST'</span> <i>"requestMethod"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>request.url = <span style=\"color: blue\">'Observation'</span> <i>"requestUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"entryRequest"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>obs.status = <span style=\"color: blue\">'final'</span> <i>"status"</i><span style=\"color: navy\">;</span>\r\n qr.subject<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>obs.subject = <span style=\"color: maroon\">s</span><span style=\"color: navy\">;</span>\r\n qr.encounter<b> as </b><span style=\"color: maroon\">e</span><span style=\"color: navy\"><b> -> </b></span>obs.encounter = <span style=\"color: maroon\">e</span><span style=\"color: navy\">;</span>\r\n qr.authored<b> as </b><span style=\"color: maroon\">t</span><span style=\"color: navy\"><b> -> </b></span>obs.effective = <span style=\"color: maroon\">t</span> <i>"effective"</i><span style=\"color: navy\">;</span>\r\n qr.source<b> as </b><span style=\"color: maroon\">src</span><span style=\"color: navy\"><b> -> </b></span>obs.performer = <span style=\"color: maroon\">src</span> <i>"performerFromSource"</i><span style=\"color: navy\">;</span>\r\n qr<b> where </b><span style=\"color: navy\">(</span>source.exists().not()<span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr.author<b> as </b><span style=\"color: maroon\">a</span><span style=\"color: navy\"><b> -> </b></span>obs.performer = <span style=\"color: maroon\">a</span> <i>"performerFromAuthor"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"performerFallback"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">A stored response's id already reads "QuestionnaireResponse/<id>", so it is</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">a relative reference as it stands. The hasValue() guard is what stops an</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">unsaved response -- one posted straight to $extract rather than saved first</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">-- from writing "QuestionnaireResponse/null" into the record.</span>\r\n qr.id<b> as </b><span style=\"color: maroon\">qid</span><b> where </b><span style=\"color: navy\">(</span>$this.hasValue()<span style=\"color: navy\">)</span><span style=\"color: navy\"><b> -> </b></span> obs.derivedFrom = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> ref.reference = <span style=\"color: maroon\">qid</span> <i>"linkQuestionnaireResponse"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SetObservationFullUrl<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">obs</span><span style=\"color: navy\"> : </span>Observation, <b>target</b> <span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> obs.id<b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\"><b> -> </b></span>entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'https://fhir.slade360.co.ke/fhir/Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span> <i>"assignFullUrl"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">The two answer shapes a component can carry. Both read the answer through the</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">untyped `.value` accessor: reading `valueCoding` or `valueQuantity` by its</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">typed property name fails at transform time on HAPI R5 with "Attempt to read</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">invalid property ... on QuestionnaireResponse.item.answer".</span>\r\n<b>group </b>SetComponentCodedValue<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">it</span>, <b>target</b> <span style=\"color: maroon\">comp</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">cv</span><span style=\"color: navy\"><b> -> </b></span>comp.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">cc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> cv<span style=\"color: navy\"><b> -> </b></span>cc.coding = <span style=\"color: maroon\">cv</span> <i>"valueCoding"</i><span style=\"color: navy\">;</span>\r\n cv.display<b> as </b><span style=\"color: maroon\">d</span><span style=\"color: navy\"><b> -> </b></span>cc.text = <span style=\"color: maroon\">d</span> <i>"valueText"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"codedValue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"componentAnswer"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SetComponentValue<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">it</span>, <b>target</b> <span style=\"color: maroon\">comp</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> it.answer first<b> as </b><span style=\"color: maroon\">a</span><b> then</b><span style=\"color: navy\"> {\r\n</span> a.value<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>comp.value = <span style=\"color: maroon\">v</span> <i>"plainValue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"componentAnswer"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SetSurveyCategory<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QR, <b>target</b> <span style=\"color: maroon\">obs</span><span style=\"color: navy\"> : </span>Observation<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>obs.category<b> as </b><span style=\"color: maroon\">cat</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>cat.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorySystem"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'survey'</span> <i>"categoryCode"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Survey'</span> <i>"categoryDisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categoryCoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SetLaboratoryCategory<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QR, <b>target</b> <span style=\"color: maroon\">obs</span><span style=\"color: navy\"> : </span>Observation<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>obs.category<b> as </b><span style=\"color: maroon\">cat</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>cat.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorySystem"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'laboratory'</span> <i>"categoryCode"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Laboratory'</span> <i>"categoryDisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categoryCoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>BuildServiceRequestBase<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QR, <b>target</b> <span style=\"color: maroon\">r</span><span style=\"color: navy\"> : </span>ServiceRequest, <b>target</b> <span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>r<b> then </b>SetResponseProvenance<span style=\"color: navy\">(</span><span style=\"color: maroon\">qr</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">r</span><span style=\"color: navy\">)</span> <i>"responseProvenance"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>r.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> then </b>SetServiceRequestFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">r</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span> <i>"idAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>entry.request<b> as </b><span style=\"color: maroon\">request</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>request.method = <span style=\"color: blue\">'POST'</span> <i>"requestMethod"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>request.url = <span style=\"color: blue\">'ServiceRequest'</span> <i>"requestUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"entryRequest"</i><span style=\"color: navy\">;</span>\r\n qr.subject<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>r.subject = <span style=\"color: maroon\">s</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SetServiceRequestFullUrl<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">r</span><span style=\"color: navy\"> : </span>ServiceRequest, <b>target</b> <span style=\"color: maroon\">entry</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> r.id<b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\"><b> -> </b></span>entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'https://fhir.slade360.co.ke/fhir/ServiceRequest/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span> <i>"assignFullUrl"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">── Provenance and tenancy ───────────────────────────────────────────────────</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">Two tags on everything this map creates. The first says which questionnaire</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">produced it, so a form that reopens mid-admission recalls its own earlier</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">entries and not another form's. The second copies the tenant tags off the</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">response, because nothing else on the path puts them there.</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">The code is the form's document type, not the questionnaire's id: every</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">environment mints its own ids, and there is only one set of maps, so an id</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">here would tie the tag to whichever environment stamped it.</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">── Provenance and tenancy ───────────────────────────────────────────────────</span>\r\n<b>group </b>SetResponseProvenance<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QR, <b>target</b> <span style=\"color: maroon\">r</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>r.meta<b> as </b><span style=\"color: maroon\">m</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>m.tag<b> as </b><span style=\"color: maroon\">t</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qr<span style=\"color: navy\"><b> -> </b></span>t.system = <span style=\"color: blue\">'http://slade360edi.com/questionnaire-provenance'</span> <i>"provenanceSystem"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>t.code = <span style=\"color: blue\">'coagulation-profile-requisition'</span> <i>"provenanceCode"</i><span style=\"color: navy\">;</span>\r\n qr<span style=\"color: navy\"><b> -> </b></span>t.display = <span style=\"color: blue\">'Coagulation profile requisition'</span> <i>"provenanceDisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"provenanceTag"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"provenanceMeta"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Every tag the response carries, onto the resource. `meta` is 0..1, so this</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">lands on the same meta the rule above created rather than a second one.</span>\r\n qr.meta<b> as </b><span style=\"color: maroon\">qm</span><b> then</b><span style=\"color: navy\"> {\r\n</span> qm.tag<b> as </b><span style=\"color: maroon\">qt</span><span style=\"color: navy\"><b> -> </b></span> r.meta<b> as </b><span style=\"color: maroon\">m</span><span style=\"color: navy\">, </span> m.tag = <span style=\"color: maroon\">qt</span> <i>"copyTag"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"tenantTags"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"url" : "https://fhir.slade360.co.ke/fhir/StructureMap/ExtractCoagulationProfileRequisition",
"version" : "0.1.0",
"name" : "ExtractCoagulationProfileRequisition",
"title" : "Coagulation Profile Requisition Extraction",
"status" : "active",
"date" : "2026-09-14T06:31:13+00:00",
"publisher" : "Kathurima Kimathi",
"contact" : [
{
"name" : "Kathurima Kimathi",
"telecom" : [
{
"system" : "url",
"value" : "https://www.linkedin.com/in/kathurima-kimathi/"
},
{
"system" : "email",
"value" : "kathurimakimathi415@gmail.com"
}
]
},
{
"name" : "Oscar John",
"telecom" : [
{
"system" : "email",
"value" : "oscarjohnotieno@gmail.com",
"use" : "work"
}
]
},
{
"name" : "Kennedy Omondi",
"telecom" : [
{
"system" : "email",
"value" : "kennankole@gmail.com",
"use" : "work"
}
]
}
],
"description" : "PT under LOINC 5964-2, INR under 6301-6 and APTT under 3173-2, each carrying the reference range printed on the form. The INR range is the reason this map needs a question answered: the printed 2.0 to 3.5 applies only to a patient on stabilised oral anticoagulant therapy, so it is attached only when the form says yes. Attaching it unconditionally would flag every patient not on warfarin as out of range, which is the opposite of useful.",
"structure" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse",
"mode" : "source",
"alias" : "QR"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/Bundle",
"mode" : "target",
"alias" : "Bundle"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/Observation",
"mode" : "target",
"alias" : "Observation"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest",
"mode" : "target",
"alias" : "ServiceRequest"
}
],
"group" : [
{
"name" : "ExtractCoagulationProfileRequisition",
"input" : [
{
"name" : "qr",
"type" : "QR",
"mode" : "source"
},
{
"name" : "bundle",
"type" : "Bundle",
"mode" : "target"
}
],
"rule" : [
{
"name" : "setBundleType",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "bundle",
"element" : "type",
"transform" : "copy",
"parameter" : [
{
"valueString" : "transaction"
}
]
}
]
},
{
"name" : "coagulationRequest",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "bundle",
"element" : "entry",
"variable" : "entry"
},
{
"context" : "entry",
"element" : "resource",
"variable" : "sr",
"transform" : "create",
"parameter" : [
{
"valueString" : "ServiceRequest"
}
]
}
],
"rule" : [
{
"name" : "base",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "sr"
},
{
"context" : "entry"
}
],
"dependent" : [
{
"name" : "BuildServiceRequestBase",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "sr"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "status",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "sr",
"element" : "status",
"transform" : "copy",
"parameter" : [
{
"valueString" : "active"
}
]
}
]
},
{
"name" : "intent",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "sr",
"element" : "intent",
"transform" : "copy",
"parameter" : [
{
"valueString" : "order"
}
]
}
]
},
{
"name" : "encounter",
"source" : [
{
"context" : "qr",
"element" : "encounter",
"variable" : "e"
}
],
"target" : [
{
"context" : "sr",
"element" : "encounter",
"transform" : "copy",
"parameter" : [
{
"valueId" : "e"
}
]
}
]
},
{
"name" : "authoredOn",
"source" : [
{
"context" : "qr",
"element" : "authored",
"variable" : "t"
}
],
"target" : [
{
"context" : "sr",
"element" : "authoredOn",
"transform" : "copy",
"parameter" : [
{
"valueId" : "t"
}
]
}
]
},
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "sr",
"element" : "category",
"variable" : "cat"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cat",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://snomed.info/sct"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "108252007"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Laboratory procedure"
}
]
}
]
}
]
}
]
},
{
"name" : "code",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "sr",
"element" : "code",
"variable" : "cr"
},
{
"context" : "cr",
"element" : "concept",
"variable" : "cc"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "anticoagulation-coagulation-profile"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Coagulation profile"
}
]
}
]
}
]
}
],
"documentation" : "A local code. LOINC publishes every individual coagulation analyte but\r\nnothing for the profile as ordered -- the panel codes that look right\r\n(34530-4, 34530-6) are an ABO and Rh group panel -- and a guessed panel\r\ncode on a laboratory order is worse than a local one that says exactly\r\nwhat the form asks for."
},
{
"name" : "requestGroup",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "g",
"condition" : "linkId = 'request'"
}
],
"rule" : [
{
"name" : "requesterRule",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'request/requester') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "requester",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "ref"
}
],
"target" : [
{
"context" : "sr",
"element" : "requester",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ref"
}
]
}
]
}
]
}
]
},
{
"name" : "urgencyRule",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'request/urgency') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "desperateRule",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "stat",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "cv",
"condition" : "code = 'lab-urgency-desperate'"
}
],
"target" : [
{
"context" : "sr",
"element" : "priority",
"transform" : "copy",
"parameter" : [
{
"valueString" : "stat"
}
]
}
]
}
]
},
{
"name" : "urgentRule",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "urgent",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "cv",
"condition" : "code = 'lab-urgency-urgent'"
}
],
"target" : [
{
"context" : "sr",
"element" : "priority",
"transform" : "copy",
"parameter" : [
{
"valueString" : "urgent"
}
]
}
]
}
]
},
{
"name" : "routineRule",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "routine",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "cv",
"condition" : "code = 'lab-urgency-routine'"
}
],
"target" : [
{
"context" : "sr",
"element" : "priority",
"transform" : "copy",
"parameter" : [
{
"valueString" : "routine"
}
]
}
]
}
]
}
]
},
{
"name" : "specimenRule",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'request/specimen') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "specimen",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "txt"
}
],
"target" : [
{
"context" : "sr",
"element" : "specimen",
"variable" : "spref",
"transform" : "create",
"parameter" : [
{
"valueString" : "Reference"
}
]
},
{
"context" : "spref",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueId" : "txt"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "historyRule",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'clinical-history') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "historyNote",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "txt"
}
],
"target" : [
{
"context" : "sr",
"element" : "note",
"variable" : "n"
},
{
"context" : "n",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueId" : "txt"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "resultsGroup",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "g",
"condition" : "linkId = 'results'"
}
],
"rule" : [
{
"name" : "prothrombinTime",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'results/prothrombin-time') and answer.value.ofType(Quantity).exists()"
}
],
"target" : [
{
"context" : "bundle",
"element" : "entry",
"variable" : "entry"
},
{
"context" : "entry",
"element" : "resource",
"variable" : "obs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "base",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
},
{
"context" : "entry"
}
],
"dependent" : [
{
"name" : "BuildObsBase",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetLaboratoryCategory",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
},
{
"name" : "code",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "code",
"variable" : "cc"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://loinc.org"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "5964-2"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Prothrombin time (PT) in Blood by Coagulation assay"
}
]
}
]
}
]
}
]
},
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "value",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "v"
}
],
"target" : [
{
"context" : "obs",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "v"
}
]
}
]
}
]
},
{
"name" : "referenceRange",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "referenceRange",
"variable" : "rr"
}
],
"rule" : [
{
"name" : "low",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "rr",
"element" : "low",
"variable" : "lo",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "loValue",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueString" : "11"
}
]
}
]
},
{
"name" : "loUnit",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueString" : "seconds"
}
]
}
]
},
{
"name" : "loSystem",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://unitsofmeasure.org"
}
]
}
]
},
{
"name" : "loCode",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "s"
}
]
}
]
}
]
},
{
"name" : "high",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "rr",
"element" : "high",
"variable" : "hi",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "hiValue",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueString" : "16"
}
]
}
]
},
{
"name" : "hiUnit",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueString" : "seconds"
}
]
}
]
},
{
"name" : "hiSystem",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://unitsofmeasure.org"
}
]
}
]
},
{
"name" : "hiCode",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "s"
}
]
}
]
}
]
},
{
"name" : "rrText",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "rr",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Reference range printed on the coagulation profile form"
}
]
}
]
}
]
},
{
"name" : "context",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetCoagulationContext",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
}
],
"documentation" : "── Prothrombin time ──────────────────────────────────────────────────"
},
{
"name" : "aptt",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'results/aptt') and answer.value.ofType(Quantity).exists()"
}
],
"target" : [
{
"context" : "bundle",
"element" : "entry",
"variable" : "entry"
},
{
"context" : "entry",
"element" : "resource",
"variable" : "obs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "base",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
},
{
"context" : "entry"
}
],
"dependent" : [
{
"name" : "BuildObsBase",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetLaboratoryCategory",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
},
{
"name" : "code",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "code",
"variable" : "cc"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://loinc.org"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "3173-2"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "aPTT in Blood by Coagulation assay"
}
]
}
]
}
]
}
]
},
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "value",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "v"
}
],
"target" : [
{
"context" : "obs",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "v"
}
]
}
]
}
]
},
{
"name" : "referenceRange",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "referenceRange",
"variable" : "rr"
}
],
"rule" : [
{
"name" : "low",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "rr",
"element" : "low",
"variable" : "lo",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "loValue",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueString" : "26.1"
}
]
}
]
},
{
"name" : "loUnit",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueString" : "seconds"
}
]
}
]
},
{
"name" : "loSystem",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://unitsofmeasure.org"
}
]
}
]
},
{
"name" : "loCode",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "lo",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "s"
}
]
}
]
}
]
},
{
"name" : "high",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "rr",
"element" : "high",
"variable" : "hi",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "hiValue",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueString" : "36.3"
}
]
}
]
},
{
"name" : "hiUnit",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueString" : "seconds"
}
]
}
]
},
{
"name" : "hiSystem",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://unitsofmeasure.org"
}
]
}
]
},
{
"name" : "hiCode",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "hi",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "s"
}
]
}
]
}
]
},
{
"name" : "rrText",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "rr",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Reference range printed on the coagulation profile form"
}
]
}
]
}
]
},
{
"name" : "context",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetCoagulationContext",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
}
],
"documentation" : "── APTT ──────────────────────────────────────────────────────────────"
},
{
"name" : "inr",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'results/inr') and answer.value.exists()"
}
],
"target" : [
{
"context" : "bundle",
"element" : "entry",
"variable" : "entry"
},
{
"context" : "entry",
"element" : "resource",
"variable" : "obs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "base",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
},
{
"context" : "entry"
}
],
"dependent" : [
{
"name" : "BuildObsBase",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetLaboratoryCategory",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
},
{
"name" : "code",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "code",
"variable" : "cc"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://loinc.org"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "6301-6"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "INR in Platelet poor plasma by Coagulation assay"
}
]
}
]
}
]
}
]
},
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "quantity",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "v"
}
],
"target" : [
{
"context" : "obs",
"element" : "value",
"variable" : "q",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "qValue",
"source" : [
{
"context" : "v"
}
],
"target" : [
{
"context" : "q",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "v"
}
]
}
]
},
{
"name" : "qUnit",
"source" : [
{
"context" : "v"
}
],
"target" : [
{
"context" : "q",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueString" : "ratio"
}
]
}
]
},
{
"name" : "qSystem",
"source" : [
{
"context" : "v"
}
],
"target" : [
{
"context" : "q",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://unitsofmeasure.org"
}
]
}
]
},
{
"name" : "qCode",
"source" : [
{
"context" : "v"
}
],
"target" : [
{
"context" : "q",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "1"
}
]
}
]
}
]
}
]
},
{
"name" : "anticoagulationGroup",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "ac",
"condition" : "linkId = 'anticoagulation'"
}
],
"rule" : [
{
"name" : "onAnticoagulantRule",
"source" : [
{
"context" : "ac",
"element" : "item",
"variable" : "oa",
"condition" : "(linkId = 'anticoagulation/on-oral-anticoagulant') and (answer.value.ofType(Coding).code = 'Y')"
}
],
"rule" : [
{
"name" : "referenceRange",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "obs",
"element" : "referenceRange",
"variable" : "rr"
}
],
"rule" : [
{
"name" : "low",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "rr",
"element" : "low",
"variable" : "lo",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "loValue",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "lo",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueString" : "2.0"
}
]
}
]
},
{
"name" : "loUnit",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "lo",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueString" : "ratio"
}
]
}
]
},
{
"name" : "loSystem",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "lo",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://unitsofmeasure.org"
}
]
}
]
},
{
"name" : "loCode",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "lo",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "1"
}
]
}
]
}
]
},
{
"name" : "high",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "rr",
"element" : "high",
"variable" : "hi",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "hiValue",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "hi",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueString" : "3.5"
}
]
}
]
},
{
"name" : "hiUnit",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "hi",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueString" : "ratio"
}
]
}
]
},
{
"name" : "hiSystem",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "hi",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://unitsofmeasure.org"
}
]
}
]
},
{
"name" : "hiCode",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "hi",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "1"
}
]
}
]
}
]
},
{
"name" : "rrText",
"source" : [
{
"context" : "oa"
}
],
"target" : [
{
"context" : "rr",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Therapeutic range for a patient on stabilised oral anticoagulant therapy, as printed on the form"
}
]
}
]
}
]
}
]
}
],
"documentation" : "The printed 2.0-3.5 range attaches only where the patient is on\r\nstabilised oral anticoagulants. For anyone else it is not a target and\r\nattaching it would mark every unanticoagulated patient abnormal."
},
{
"name" : "context",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetCoagulationContext",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
}
],
"documentation" : "── INR ───────────────────────────────────────────────────────────────\r\nObservation.value[x] has no decimal choice, so the INR -- a bare ratio\r\nwith no unit -- has to be built as a Quantity with UCUM's unity code."
}
]
},
{
"name" : "narr_55752_0",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'clinical-history') and answer.value.exists()"
}
],
"target" : [
{
"context" : "bundle",
"element" : "entry",
"variable" : "entry"
},
{
"context" : "entry",
"element" : "resource",
"variable" : "obs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "base",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
},
{
"context" : "entry"
}
],
"dependent" : [
{
"name" : "BuildObsBase",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetSurveyCategory",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
},
{
"name" : "code",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "code",
"variable" : "cc"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://loinc.org"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "55752-0"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Clinical information"
}
]
}
]
}
]
},
{
"name" : "codeText",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cc",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Clinical history given to the coagulation laboratory"
}
]
}
]
}
]
},
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "text",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "txt"
}
],
"target" : [
{
"context" : "obs",
"element" : "note",
"variable" : "n"
},
{
"context" : "n",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueId" : "txt"
}
]
}
]
}
]
}
]
},
{
"name" : "anticoagulationObs",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "g",
"condition" : "linkId = 'anticoagulation'"
}
],
"rule" : [
{
"name" : "coded_anticoagulation",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'anticoagulation/on-oral-anticoagulant') and answer.value.exists()"
}
],
"target" : [
{
"context" : "bundle",
"element" : "entry",
"variable" : "entry"
},
{
"context" : "entry",
"element" : "resource",
"variable" : "obs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "base",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
},
{
"context" : "entry"
}
],
"dependent" : [
{
"name" : "BuildObsBase",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetSurveyCategory",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
},
{
"name" : "code",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "code",
"variable" : "cc"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "anticoagulation-on-stabilised-oral-anticoagulant-therapy"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "On stabilised oral anticoagulant therapy"
}
]
}
]
}
]
}
]
},
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "codedValue",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "cv"
}
],
"target" : [
{
"context" : "obs",
"element" : "value",
"variable" : "cc",
"transform" : "create",
"parameter" : [
{
"valueString" : "CodeableConcept"
}
]
}
],
"rule" : [
{
"name" : "valueCoding",
"source" : [
{
"context" : "cv"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"transform" : "copy",
"parameter" : [
{
"valueId" : "cv"
}
]
}
]
},
{
"name" : "valueText",
"source" : [
{
"context" : "cv",
"element" : "display",
"variable" : "d"
}
],
"target" : [
{
"context" : "cc",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueId" : "d"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "narr_anticoagulation_anticoagulant_agent_and_dose",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'anticoagulation/agent') and answer.value.exists()"
}
],
"target" : [
{
"context" : "bundle",
"element" : "entry",
"variable" : "entry"
},
{
"context" : "entry",
"element" : "resource",
"variable" : "obs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "base",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
},
{
"context" : "entry"
}
],
"dependent" : [
{
"name" : "BuildObsBase",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetSurveyCategory",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
},
{
"name" : "code",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "obs",
"element" : "code",
"variable" : "cc"
}
],
"rule" : [
{
"name" : "coding",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"variable" : "cg"
}
],
"rule" : [
{
"name" : "sys",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://fhir.slade360.co.ke/fhir/CodeSystem/concept-codesystem"
}
]
}
]
},
{
"name" : "cd",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "anticoagulation-anticoagulant-agent-and-dose"
}
]
}
]
},
{
"name" : "dsp",
"source" : [
{
"context" : "it"
}
],
"target" : [
{
"context" : "cg",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Anticoagulant agent and dose"
}
]
}
]
}
]
}
]
},
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "text",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "txt"
}
],
"target" : [
{
"context" : "obs",
"element" : "note",
"variable" : "n"
},
{
"context" : "n",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueId" : "txt"
}
]
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "SetCoagulationContext",
"input" : [
{
"name" : "qr",
"type" : "QR",
"mode" : "source"
},
{
"name" : "obs",
"type" : "Observation",
"mode" : "target"
}
],
"rule" : [
{
"name" : "laboratoryGroup",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "g",
"condition" : "linkId = 'laboratory'"
}
],
"rule" : [
{
"name" : "collectedAtRule",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'laboratory/collected-at') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "effective",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "v"
}
],
"target" : [
{
"context" : "obs",
"element" : "effective",
"transform" : "copy",
"parameter" : [
{
"valueId" : "v"
}
]
}
]
}
]
}
]
},
{
"name" : "testedByRule",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'laboratory/tested-by') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "testedBy",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "ref"
}
],
"target" : [
{
"context" : "obs",
"element" : "performer",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ref"
}
]
}
]
}
]
}
]
},
{
"name" : "dispatchedRule",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'laboratory/dispatched-at') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "issued",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "v"
}
],
"target" : [
{
"context" : "obs",
"element" : "issued",
"transform" : "cast",
"parameter" : [
{
"valueId" : "v"
},
{
"valueString" : "instant"
}
]
}
]
}
]
}
]
},
{
"name" : "labRegRule",
"source" : [
{
"context" : "g",
"element" : "item",
"variable" : "it",
"condition" : "(linkId = 'laboratory/lab-registration-number') and answer.value.exists()"
}
],
"rule" : [
{
"name" : "answer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "identifier",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "txt"
}
],
"target" : [
{
"context" : "obs",
"element" : "identifier",
"variable" : "ident"
}
],
"rule" : [
{
"name" : "identSystem",
"source" : [
{
"context" : "txt"
}
],
"target" : [
{
"context" : "ident",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://fhir.slade360.co.ke/fhir/identifier/lab-registration"
}
]
}
]
},
{
"name" : "identValue",
"source" : [
{
"context" : "txt"
}
],
"target" : [
{
"context" : "ident",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "txt"
}
]
}
]
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "BuildObsBase",
"documentation" : "─────────────────────────────────────────────────────────────────────────────\r\nShared scaffolding. Repeated in each map rather than imported: the transform\r\nengine resolves `imports` against whatever StructureMaps happen to be on the\r\nserver, and a form that stops extracting because a shared map was not\r\nuploaded is a worse failure than a duplicated group.\r\nTwo notes on what the publisher's StructureMap validator says about this file.\r\nSource parameters below are left untyped on purpose. Writing `: Element` makes\r\nthe validator compare QuestionnaireResponse.item against the literal 'Element'\r\nand report them as incompatible with each other, which is noise, not a finding.\r\n`evaluate(context, expression)` is flagged as \"takes 1 parameter but 2 were\r\nfound\". Leave it. The FML parser in the same jar refuses the one-argument form\r\noutright -- it wants a parameter, a comma, then the FHIRPath -- so the\r\npublisher is objecting to what its own compiler emits. Two arguments is the\r\nonly form that compiles, and it is what the R5 transform engine executes.\r\n─────────────────────────────────────────────────────────────────────────────",
"input" : [
{
"name" : "qr",
"type" : "QR",
"mode" : "source"
},
{
"name" : "obs",
"type" : "Observation",
"mode" : "target"
},
{
"name" : "entry",
"mode" : "target"
}
],
"rule" : [
{
"name" : "responseProvenance",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs"
}
],
"dependent" : [
{
"name" : "SetResponseProvenance",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "obs"
}
]
}
]
},
{
"name" : "idAndFullUrl",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs",
"element" : "id",
"transform" : "uuid"
}
],
"dependent" : [
{
"name" : "SetObservationFullUrl",
"parameter" : [
{
"valueId" : "obs"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "entryRequest",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "entry",
"element" : "request",
"variable" : "request"
}
],
"rule" : [
{
"name" : "requestMethod",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "request",
"element" : "method",
"transform" : "copy",
"parameter" : [
{
"valueString" : "POST"
}
]
}
]
},
{
"name" : "requestUrl",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "request",
"element" : "url",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
]
}
]
},
{
"name" : "status",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs",
"element" : "status",
"transform" : "copy",
"parameter" : [
{
"valueString" : "final"
}
]
}
]
},
{
"name" : "subject",
"source" : [
{
"context" : "qr",
"element" : "subject",
"variable" : "s"
}
],
"target" : [
{
"context" : "obs",
"element" : "subject",
"transform" : "copy",
"parameter" : [
{
"valueId" : "s"
}
]
}
]
},
{
"name" : "encounter",
"source" : [
{
"context" : "qr",
"element" : "encounter",
"variable" : "e"
}
],
"target" : [
{
"context" : "obs",
"element" : "encounter",
"transform" : "copy",
"parameter" : [
{
"valueId" : "e"
}
]
}
]
},
{
"name" : "effective",
"source" : [
{
"context" : "qr",
"element" : "authored",
"variable" : "t"
}
],
"target" : [
{
"context" : "obs",
"element" : "effective",
"transform" : "copy",
"parameter" : [
{
"valueId" : "t"
}
]
}
]
},
{
"name" : "performerFromSource",
"source" : [
{
"context" : "qr",
"element" : "source",
"variable" : "src"
}
],
"target" : [
{
"context" : "obs",
"element" : "performer",
"transform" : "copy",
"parameter" : [
{
"valueId" : "src"
}
]
}
]
},
{
"name" : "performerFallback",
"source" : [
{
"context" : "qr",
"condition" : "source.exists().not()"
}
],
"rule" : [
{
"name" : "performerFromAuthor",
"source" : [
{
"context" : "qr",
"element" : "author",
"variable" : "a"
}
],
"target" : [
{
"context" : "obs",
"element" : "performer",
"transform" : "copy",
"parameter" : [
{
"valueId" : "a"
}
]
}
]
}
]
},
{
"name" : "linkQuestionnaireResponse",
"source" : [
{
"context" : "qr",
"element" : "id",
"variable" : "qid",
"condition" : "$this.hasValue()"
}
],
"target" : [
{
"context" : "obs",
"element" : "derivedFrom",
"variable" : "ref",
"transform" : "create",
"parameter" : [
{
"valueString" : "Reference"
}
]
},
{
"context" : "ref",
"element" : "reference",
"transform" : "copy",
"parameter" : [
{
"valueId" : "qid"
}
]
}
],
"documentation" : "A stored response's id already reads \"QuestionnaireResponse/<id>\", so it is\r\na relative reference as it stands. The hasValue() guard is what stops an\r\nunsaved response -- one posted straight to $extract rather than saved first\r\n-- from writing \"QuestionnaireResponse/null\" into the record."
}
]
},
{
"name" : "SetObservationFullUrl",
"input" : [
{
"name" : "obs",
"type" : "Observation",
"mode" : "source"
},
{
"name" : "entry",
"mode" : "target"
}
],
"rule" : [
{
"name" : "assignFullUrl",
"source" : [
{
"context" : "obs",
"element" : "id",
"variable" : "id"
}
],
"target" : [
{
"context" : "entry",
"element" : "fullUrl",
"transform" : "append",
"parameter" : [
{
"valueString" : "https://fhir.slade360.co.ke/fhir/Observation/"
},
{
"valueId" : "id"
}
]
}
]
}
]
},
{
"name" : "SetComponentCodedValue",
"documentation" : "The two answer shapes a component can carry. Both read the answer through the\r\nuntyped `.value` accessor: reading `valueCoding` or `valueQuantity` by its\r\ntyped property name fails at transform time on HAPI R5 with \"Attempt to read\r\ninvalid property ... on QuestionnaireResponse.item.answer\".",
"input" : [
{
"name" : "it",
"mode" : "source"
},
{
"name" : "comp",
"mode" : "target"
}
],
"rule" : [
{
"name" : "componentAnswer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "codedValue",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "cv"
}
],
"target" : [
{
"context" : "comp",
"element" : "value",
"variable" : "cc",
"transform" : "create",
"parameter" : [
{
"valueString" : "CodeableConcept"
}
]
}
],
"rule" : [
{
"name" : "valueCoding",
"source" : [
{
"context" : "cv"
}
],
"target" : [
{
"context" : "cc",
"element" : "coding",
"transform" : "copy",
"parameter" : [
{
"valueId" : "cv"
}
]
}
]
},
{
"name" : "valueText",
"source" : [
{
"context" : "cv",
"element" : "display",
"variable" : "d"
}
],
"target" : [
{
"context" : "cc",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueId" : "d"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "SetComponentValue",
"input" : [
{
"name" : "it",
"mode" : "source"
},
{
"name" : "comp",
"mode" : "target"
}
],
"rule" : [
{
"name" : "componentAnswer",
"source" : [
{
"context" : "it",
"element" : "answer",
"listMode" : "first",
"variable" : "a"
}
],
"rule" : [
{
"name" : "plainValue",
"source" : [
{
"context" : "a",
"element" : "value",
"variable" : "v"
}
],
"target" : [
{
"context" : "comp",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "v"
}
]
}
]
}
]
}
]
},
{
"name" : "SetSurveyCategory",
"input" : [
{
"name" : "qr",
"type" : "QR",
"mode" : "source"
},
{
"name" : "obs",
"type" : "Observation",
"mode" : "target"
}
],
"rule" : [
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs",
"element" : "category",
"variable" : "cat"
}
],
"rule" : [
{
"name" : "categoryCoding",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cat",
"element" : "coding",
"variable" : "coding"
}
],
"rule" : [
{
"name" : "categorySystem",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "coding",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://terminology.hl7.org/CodeSystem/observation-category"
}
]
}
]
},
{
"name" : "categoryCode",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "coding",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "survey"
}
]
}
]
},
{
"name" : "categoryDisplay",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "coding",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Survey"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "SetLaboratoryCategory",
"input" : [
{
"name" : "qr",
"type" : "QR",
"mode" : "source"
},
{
"name" : "obs",
"type" : "Observation",
"mode" : "target"
}
],
"rule" : [
{
"name" : "category",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "obs",
"element" : "category",
"variable" : "cat"
}
],
"rule" : [
{
"name" : "categoryCoding",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "cat",
"element" : "coding",
"variable" : "coding"
}
],
"rule" : [
{
"name" : "categorySystem",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "coding",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://terminology.hl7.org/CodeSystem/observation-category"
}
]
}
]
},
{
"name" : "categoryCode",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "coding",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "laboratory"
}
]
}
]
},
{
"name" : "categoryDisplay",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "coding",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Laboratory"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "BuildServiceRequestBase",
"input" : [
{
"name" : "qr",
"type" : "QR",
"mode" : "source"
},
{
"name" : "r",
"type" : "ServiceRequest",
"mode" : "target"
},
{
"name" : "entry",
"mode" : "target"
}
],
"rule" : [
{
"name" : "responseProvenance",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "r"
}
],
"dependent" : [
{
"name" : "SetResponseProvenance",
"parameter" : [
{
"valueId" : "qr"
},
{
"valueId" : "r"
}
]
}
]
},
{
"name" : "idAndFullUrl",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "r",
"element" : "id",
"transform" : "uuid"
}
],
"dependent" : [
{
"name" : "SetServiceRequestFullUrl",
"parameter" : [
{
"valueId" : "r"
},
{
"valueId" : "entry"
}
]
}
]
},
{
"name" : "entryRequest",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "entry",
"element" : "request",
"variable" : "request"
}
],
"rule" : [
{
"name" : "requestMethod",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "request",
"element" : "method",
"transform" : "copy",
"parameter" : [
{
"valueString" : "POST"
}
]
}
]
},
{
"name" : "requestUrl",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "request",
"element" : "url",
"transform" : "copy",
"parameter" : [
{
"valueString" : "ServiceRequest"
}
]
}
]
}
]
},
{
"name" : "subject",
"source" : [
{
"context" : "qr",
"element" : "subject",
"variable" : "s"
}
],
"target" : [
{
"context" : "r",
"element" : "subject",
"transform" : "copy",
"parameter" : [
{
"valueId" : "s"
}
]
}
]
}
]
},
{
"name" : "SetServiceRequestFullUrl",
"input" : [
{
"name" : "r",
"type" : "ServiceRequest",
"mode" : "source"
},
{
"name" : "entry",
"mode" : "target"
}
],
"rule" : [
{
"name" : "assignFullUrl",
"source" : [
{
"context" : "r",
"element" : "id",
"variable" : "id"
}
],
"target" : [
{
"context" : "entry",
"element" : "fullUrl",
"transform" : "append",
"parameter" : [
{
"valueString" : "https://fhir.slade360.co.ke/fhir/ServiceRequest/"
},
{
"valueId" : "id"
}
]
}
]
}
]
},
{
"name" : "SetResponseProvenance",
"documentation" : "── Provenance and tenancy ───────────────────────────────────────────────────\r\nTwo tags on everything this map creates. The first says which questionnaire\r\nproduced it, so a form that reopens mid-admission recalls its own earlier\r\nentries and not another form's. The second copies the tenant tags off the\r\nresponse, because nothing else on the path puts them there.\r\nThe code is the form's document type, not the questionnaire's id: every\r\nenvironment mints its own ids, and there is only one set of maps, so an id\r\nhere would tie the tag to whichever environment stamped it.\r\n── Provenance and tenancy ───────────────────────────────────────────────────",
"input" : [
{
"name" : "qr",
"type" : "QR",
"mode" : "source"
},
{
"name" : "r",
"mode" : "target"
}
],
"rule" : [
{
"name" : "provenanceMeta",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "r",
"element" : "meta",
"variable" : "m"
}
],
"rule" : [
{
"name" : "provenanceTag",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "m",
"element" : "tag",
"variable" : "t"
}
],
"rule" : [
{
"name" : "provenanceSystem",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "t",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://slade360edi.com/questionnaire-provenance"
}
]
}
]
},
{
"name" : "provenanceCode",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "t",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "coagulation-profile-requisition"
}
]
}
]
},
{
"name" : "provenanceDisplay",
"source" : [
{
"context" : "qr"
}
],
"target" : [
{
"context" : "t",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Coagulation profile requisition"
}
]
}
]
}
]
}
]
},
{
"name" : "tenantTags",
"source" : [
{
"context" : "qr",
"element" : "meta",
"variable" : "qm"
}
],
"rule" : [
{
"name" : "copyTag",
"source" : [
{
"context" : "qm",
"element" : "tag",
"variable" : "qt"
}
],
"target" : [
{
"context" : "r",
"element" : "meta",
"variable" : "m"
},
{
"context" : "m",
"element" : "tag",
"transform" : "copy",
"parameter" : [
{
"valueId" : "qt"
}
]
}
]
}
],
"documentation" : "Every tag the response carries, onto the resource. `meta` is 0..1, so this\r\nlands on the same meta the rule above created rather than a second one."
}
]
}
]
}