@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<https://fhir.slade360.co.ke/fhir/CodeSystem/specimen-collection-codesystem> a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "specimen-collection-codesystem"] ; # 
  fhir:text [
     fhir:status [ fhir:v "generated" ] ;
     fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem specimen-collection-codesystem</b></p><a name=\"specimen-collection-codesystem\"> </a><a name=\"hcspecimen-collection-codesystem\"> </a><p>This case-sensitive code system <code>https://fhir.slade360.co.ke/fhir/CodeSystem/specimen-collection-codesystem</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">swab<a name=\"specimen-collection-codesystem-swab\"> </a></td><td>Swab</td><td>Material collected on a swab, whatever the site. The site is recorded on the specimen, not in this code.</td></tr><tr><td style=\"white-space:nowrap\">edta-tube<a name=\"specimen-collection-codesystem-edta-tube\"> </a></td><td>EDTA tube (purple top)</td><td>Tube carrying potassium EDTA anticoagulant, used for haematology.</td></tr><tr><td style=\"white-space:nowrap\">sst-gel-tube<a name=\"specimen-collection-codesystem-sst-gel-tube\"> </a></td><td>SST gel tube (gold top)</td><td>Serum separator tube with a polymer gel barrier, used for most chemistry and serology.</td></tr><tr><td style=\"white-space:nowrap\">plain-tube<a name=\"specimen-collection-codesystem-plain-tube\"> </a></td><td>Plain tube (red top)</td><td>Tube with no additive, letting the sample clot for serum.</td></tr><tr><td style=\"white-space:nowrap\">citrate-tube<a name=\"specimen-collection-codesystem-citrate-tube\"> </a></td><td>Sodium citrate tube (blue top)</td><td>Tube carrying buffered sodium citrate at a fixed blood-to-additive ratio, used for coagulation. Sensitive to a short draw.</td></tr><tr><td style=\"white-space:nowrap\">fluoride-oxalate-tube<a name=\"specimen-collection-codesystem-fluoride-oxalate-tube\"> </a></td><td>Fluoride oxalate tube (grey top)</td><td>Tube carrying sodium fluoride and potassium oxalate, which halts glycolysis for glucose and lactate.</td></tr><tr><td style=\"white-space:nowrap\">lithium-heparin-tube<a name=\"specimen-collection-codesystem-lithium-heparin-tube\"> </a></td><td>Lithium heparin tube (green top)</td><td>Tube carrying lithium heparin anticoagulant, used for plasma chemistry.</td></tr><tr><td style=\"white-space:nowrap\">blood-culture-aerobic<a name=\"specimen-collection-codesystem-blood-culture-aerobic\"> </a></td><td>Blood culture bottle (aerobic)</td><td>Culture bottle for organisms that grow in the presence of oxygen.</td></tr><tr><td style=\"white-space:nowrap\">blood-culture-anaerobic<a name=\"specimen-collection-codesystem-blood-culture-anaerobic\"> </a></td><td>Blood culture bottle (anaerobic)</td><td>Culture bottle for organisms that grow in the absence of oxygen.</td></tr><tr><td style=\"white-space:nowrap\">sterile-universal-container<a name=\"specimen-collection-codesystem-sterile-universal-container\"> </a></td><td>Sterile universal container</td><td>A sterile screw-top pot for urine, stool, sputum and other unpreserved samples.</td></tr><tr><td style=\"white-space:nowrap\">formalin-pot<a name=\"specimen-collection-codesystem-formalin-pot\"> </a></td><td>Formalin pot (10% neutral buffered)</td><td>Pot pre-filled with 10% neutral buffered formalin, for tissue going to histopathology.</td></tr><tr><td style=\"white-space:nowrap\">cytology-fixative-pot<a name=\"specimen-collection-codesystem-cytology-fixative-pot\"> </a></td><td>Cytology fixative pot</td><td>Pot pre-filled with cytology fixative, for samples going to cytology.</td></tr><tr><td style=\"white-space:nowrap\">amies-swab<a name=\"specimen-collection-codesystem-amies-swab\"> </a></td><td>Transport swab (Amies medium)</td><td>A swab in Amies transport medium, keeping organisms viable on the way to microbiology.</td></tr><tr><td style=\"white-space:nowrap\">clean-draw<a name=\"specimen-collection-codesystem-clean-draw\"> </a></td><td>Clean draw</td><td>The draw went cleanly and the sample is fit for testing.</td></tr><tr><td style=\"white-space:nowrap\">difficult-draw<a name=\"specimen-collection-codesystem-difficult-draw\"> </a></td><td>Difficult draw</td><td>The draw needed more than one attempt or prolonged venous access. The sample stands, but results sensitive to a traumatic draw are read with it in mind.</td></tr><tr><td style=\"white-space:nowrap\">short-draw<a name=\"specimen-collection-codesystem-short-draw\"> </a></td><td>Short draw, under volume</td><td>The container was filled below its target volume. It matters most where the blood-to-additive ratio is fixed, as in a citrate tube.</td></tr></table></div>"^^rdf:XMLLiteral ]
  ] ; # 
  fhir:url [ fhir:v "https://fhir.slade360.co.ke/fhir/CodeSystem/specimen-collection-codesystem"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "0.1.0"] ; # 
  fhir:name [ fhir:v "SGHISpecimenCollectionCodeSystem"] ; # 
  fhir:title [ fhir:v "SGHI Specimen Collection Code System"] ; # 
  fhir:status [ fhir:v "active"] ; # 
  fhir:experimental [ fhir:v false] ; # 
  fhir:date [ fhir:v "2026-09-15T11:40:24+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "Kathurima Kimathi"] ; # 
  fhir:contact ( [
     fhir:name [ fhir:v "Kathurima Kimathi" ] ;
     fhir:telecom ( [
       fhir:system [ fhir:v "url" ] ;
       fhir:value [ fhir:v "https://www.linkedin.com/in/kathurima-kimathi/" ]
     ] [
       fhir:system [ fhir:v "email" ] ;
       fhir:value [ fhir:v "kathurimakimathi415@gmail.com" ]
     ] )
  ] [
     fhir:name [ fhir:v "Oscar John" ] ;
     fhir:telecom ( [
       fhir:system [ fhir:v "email" ] ;
       fhir:value [ fhir:v "oscarjohnotieno@gmail.com" ] ;
       fhir:use [ fhir:v "work" ]
     ] )
  ] [
     fhir:name [ fhir:v "Kennedy Omondi" ] ;
     fhir:telecom ( [
       fhir:system [ fhir:v "email" ] ;
       fhir:value [ fhir:v "kennankole@gmail.com" ] ;
       fhir:use [ fhir:v "work" ]
     ] )
  ] ) ; # 
  fhir:description [ fhir:v "A code system enumerating the specimen collection concepts with no home in HL7 terminology: the containers a sample is collected into, and how the draw itself went."] ; # 
  fhir:caseSensitive [ fhir:v true] ; # 
  fhir:content [ fhir:v "complete"] ; # 
  fhir:count [ fhir:v "16"^^xsd:nonNegativeInteger] ; # 
  fhir:concept ( [
     fhir:code [ fhir:v "swab" ] ;
     fhir:display [ fhir:v "Swab" ] ;
     fhir:definition [ fhir:v "Material collected on a swab, whatever the site. The site is recorded on the specimen, not in this code." ]
  ] [
     fhir:code [ fhir:v "edta-tube" ] ;
     fhir:display [ fhir:v "EDTA tube (purple top)" ] ;
     fhir:definition [ fhir:v "Tube carrying potassium EDTA anticoagulant, used for haematology." ]
  ] [
     fhir:code [ fhir:v "sst-gel-tube" ] ;
     fhir:display [ fhir:v "SST gel tube (gold top)" ] ;
     fhir:definition [ fhir:v "Serum separator tube with a polymer gel barrier, used for most chemistry and serology." ]
  ] [
     fhir:code [ fhir:v "plain-tube" ] ;
     fhir:display [ fhir:v "Plain tube (red top)" ] ;
     fhir:definition [ fhir:v "Tube with no additive, letting the sample clot for serum." ]
  ] [
     fhir:code [ fhir:v "citrate-tube" ] ;
     fhir:display [ fhir:v "Sodium citrate tube (blue top)" ] ;
     fhir:definition [ fhir:v "Tube carrying buffered sodium citrate at a fixed blood-to-additive ratio, used for coagulation. Sensitive to a short draw." ]
  ] [
     fhir:code [ fhir:v "fluoride-oxalate-tube" ] ;
     fhir:display [ fhir:v "Fluoride oxalate tube (grey top)" ] ;
     fhir:definition [ fhir:v "Tube carrying sodium fluoride and potassium oxalate, which halts glycolysis for glucose and lactate." ]
  ] [
     fhir:code [ fhir:v "lithium-heparin-tube" ] ;
     fhir:display [ fhir:v "Lithium heparin tube (green top)" ] ;
     fhir:definition [ fhir:v "Tube carrying lithium heparin anticoagulant, used for plasma chemistry." ]
  ] [
     fhir:code [ fhir:v "blood-culture-aerobic" ] ;
     fhir:display [ fhir:v "Blood culture bottle (aerobic)" ] ;
     fhir:definition [ fhir:v "Culture bottle for organisms that grow in the presence of oxygen." ]
  ] [
     fhir:code [ fhir:v "blood-culture-anaerobic" ] ;
     fhir:display [ fhir:v "Blood culture bottle (anaerobic)" ] ;
     fhir:definition [ fhir:v "Culture bottle for organisms that grow in the absence of oxygen." ]
  ] [
     fhir:code [ fhir:v "sterile-universal-container" ] ;
     fhir:display [ fhir:v "Sterile universal container" ] ;
     fhir:definition [ fhir:v "A sterile screw-top pot for urine, stool, sputum and other unpreserved samples." ]
  ] [
     fhir:code [ fhir:v "formalin-pot" ] ;
     fhir:display [ fhir:v "Formalin pot (10% neutral buffered)" ] ;
     fhir:definition [ fhir:v "Pot pre-filled with 10% neutral buffered formalin, for tissue going to histopathology." ]
  ] [
     fhir:code [ fhir:v "cytology-fixative-pot" ] ;
     fhir:display [ fhir:v "Cytology fixative pot" ] ;
     fhir:definition [ fhir:v "Pot pre-filled with cytology fixative, for samples going to cytology." ]
  ] [
     fhir:code [ fhir:v "amies-swab" ] ;
     fhir:display [ fhir:v "Transport swab (Amies medium)" ] ;
     fhir:definition [ fhir:v "A swab in Amies transport medium, keeping organisms viable on the way to microbiology." ]
  ] [
     fhir:code [ fhir:v "clean-draw" ] ;
     fhir:display [ fhir:v "Clean draw" ] ;
     fhir:definition [ fhir:v "The draw went cleanly and the sample is fit for testing." ]
  ] [
     fhir:code [ fhir:v "difficult-draw" ] ;
     fhir:display [ fhir:v "Difficult draw" ] ;
     fhir:definition [ fhir:v "The draw needed more than one attempt or prolonged venous access. The sample stands, but results sensitive to a traumatic draw are read with it in mind." ]
  ] [
     fhir:code [ fhir:v "short-draw" ] ;
     fhir:display [ fhir:v "Short draw, under volume" ] ;
     fhir:definition [ fhir:v "The container was filled below its target volume. It matters most where the blood-to-additive ratio is fixed, as in a citrate tube." ]
  ] ) . # 

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