INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/qligier/simple-test-ig --branch test-syntax-highlight repo DEBUG:root:Time to deadline 35879.997301 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.63021 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.360312 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 120 packages in 5s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.8.3 npm notice Changelog: npm notice Run `npm install -g npm@10.8.3` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/qligier/simple-test-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35873.422066 seconds FHIR IG Publisher Version 1.6.22 (Git# 33e2566af5b4). Built 2024-08-28T19:21:55.278Z (11 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/qligier/simple-test-ig/ -out /scratch/repo Start Clock @ Monday, September 9, 2024, 1:28:25 PM Coordinated Universal Time (2024-09-09T13:28:25Z) Build FHIR IG from /scratch/repo (00:00.028 / 00:00.029, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.033, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.038, 89Mb) Run Sushi on /scratch/repo (00:00.005 / 00:00.044, 89Mb) Sushi: info Running SUSHI v3.11.1 (implements FHIR Shorthand specification v3.0.0-ballot) (00:00.686 / 00:00.730, 97Mb) Sushi: info Arguments: (00:00.000 / 00:00.731, 97Mb) Sushi: info --require-latest (00:00.000 / 00:00.731, 97Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.731, 97Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.732, 97Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.947 / 00:01.679, 97Mb) Sushi: info Importing FSH text... (00:00.164 / 00:01.843, 97Mb) Sushi: error extraneous input 'sdfsdf' expecting {, KW_ALIAS, KW_PROFILE, KW_EXTENSION, KW_INSTANCE, KW_INVARIANT, KW_VALUESET, KW_CODESYSTEM, KW_RULESET, KW_MAPPING, KW_LOGICAL, KW_RESOURCE} (00:00.091 / 00:01.935, 97Mb) Sushi: File: /scratch/repo/input/fsh/patient.fsh (00:00.000 / 00:01.936, 97Mb) Sushi: Line: 15 (00:00.000 / 00:01.936, 97Mb) Sushi: info Preprocessed 3 documents with 3 aliases. (00:00.019 / 00:01.955, 97Mb) Sushi: error Skipping Profile: a Profile named TumorSize already exists. (00:00.010 / 00:01.965, 97Mb) Sushi: File: /scratch/repo/input/fsh/simple.fsh (00:00.000 / 00:01.966, 97Mb) Sushi: Line: 1 - 3 (00:00.000 / 00:01.966, 97Mb) Sushi: info Imported 3 definitions and 2 instances. (00:00.000 / 00:01.966, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:01.969, 97Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.029 / 00:01.999, 97Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.131 / 00:02.130, 97Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.015 / 00:02.145, 97Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.101 / 00:02.247, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.0.2... (00:00.514 / 00:02.762, 97Mb) Sushi: info Did not find hl7.terminology.r4#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.030 / 00:02.793, 97Mb) Sushi: info Downloading hl7.terminology.r4#6.0.2... https://packages.fhir.org/hl7.terminology.r4/6.0.2 (00:00.000 / 00:02.793, 97Mb) Sushi: info Downloaded hl7.terminology.r4#6.0.2 (00:02.091 / 00:04.884, 97Mb) Sushi: info Loaded package hl7.terminology.r4#6.0.2 (00:02.260 / 00:07.145, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.425 / 00:07.571, 97Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.509 / 00:08.080, 97Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:08.080, 97Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.930 / 00:10.011, 97Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.468 / 00:11.480, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:11.480, 97Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.788 / 00:12.269, 97Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:12.270, 97Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.550 / 00:14.821, 97Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:02.842 / 00:17.663, 97Mb) Sushi: info Converting FSH to FHIR resources... (00:00.063 / 00:17.727, 97Mb) Sushi: error No element found at path subject for AssignmentRule in MyPatient, skipping rule (00:00.055 / 00:17.782, 97Mb) Sushi: File: /scratch/repo/input/fsh/patient.fsh (00:00.000 / 00:17.782, 97Mb) Sushi: Line: 7 (00:00.000 / 00:17.783, 97Mb) Sushi: info Converted 3 FHIR StructureDefinitions. (00:00.023 / 00:17.807, 97Mb) Sushi: info Converted 2 FHIR instances. (00:00.087 / 00:17.894, 97Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:17.894, 97Mb) Sushi: info Exported 5 FHIR resources as JSON. (00:00.012 / 00:17.908, 97Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:17.909, 97Mb) Sushi: info Generated ImplementationGuide-ch.qligier.fhir.json (00:00.008 / 00:17.918, 97Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:17.918, 97Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:17.920, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.920, 97Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:17.920, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:17.921, 97Mb) Sushi: | | 2 | 1 | 0 | 0 | | (00:00.000 / 00:17.921, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.921, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.921, 97Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:17.922, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:17.922, 97Mb) Sushi: | | 0 | 0 | 2 | | (00:00.000 / 00:17.922, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.922, 97Mb) Sushi: | | (00:00.000 / 00:17.923, 97Mb) Sushi: =================================================================== (00:00.000 / 00:17.923, 97Mb) Sushi: | Call a FSH sturgeon! 3 Errors 0 Warnings | (00:00.000 / 00:17.923, 97Mb) Sushi: =================================================================== (00:00.000 / 00:17.924, 97Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.052 / 00:17.976, 97Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:17.976, 97Mb) Exception: Process exited with an error: 3 (Exit value: 3) (00:00.000 / 00:17.976, 97Mb) Publishing Content Failed: Process exited with an error: 3 (Exit value: 3) (00:00.000 / 00:17.977, 97Mb) (00:00.000 / 00:17.977, 97Mb) Use -? to get command line help (00:00.000 / 00:17.977, 97Mb) (00:00.000 / 00:17.977, 97Mb) Stack Dump (for debugging): (00:00.000 / 00:17.978, 97Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 3 (Exit value: 3) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2572) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1012) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13036)