INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/qligier/simple-test-ig --branch test-pr repo DEBUG:root:Time to deadline 35879.99672 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.679778 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.560632 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 120 packages in 5s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.8.3 npm notice Changelog: npm notice Run `npm install -g npm@10.8.3` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/qligier/simple-test-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35873.017446 seconds FHIR IG Publisher Version 1.6.22 (Git# 33e2566af5b4). Built 2024-08-28T19:21:55.278Z (11 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/qligier/simple-test-ig/ -out /scratch/repo Start Clock @ Monday, September 9, 2024, 2:03:24 PM Coordinated Universal Time (2024-09-09T14:03:24Z) Build FHIR IG from /scratch/repo (00:00.028 / 00:00.029, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.033, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.036, 89Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.042, 89Mb) Sushi: info Running SUSHI v3.11.1 (implements FHIR Shorthand specification v3.0.0-ballot) (00:00.658 / 00:00.701, 97Mb) Sushi: info Arguments: (00:00.000 / 00:00.701, 97Mb) Sushi: info --require-latest (00:00.000 / 00:00.702, 97Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.702, 97Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.703, 97Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.917 / 00:01.621, 97Mb) Sushi: info Importing FSH text... (00:00.169 / 00:01.790, 97Mb) Sushi: info Preprocessed 2 documents with 0 aliases. (00:00.104 / 00:01.895, 97Mb) Sushi: info Imported 2 definitions and 2 instances. (00:00.013 / 00:01.908, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.003 / 00:01.911, 97Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.044 / 00:01.955, 97Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.120 / 00:02.076, 97Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.014 / 00:02.091, 97Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.114 / 00:02.206, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.0.2... (00:00.507 / 00:02.713, 97Mb) Sushi: info Did not find hl7.terminology.r4#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.034 / 00:02.748, 97Mb) Sushi: info Downloading hl7.terminology.r4#6.0.2... https://packages.fhir.org/hl7.terminology.r4/6.0.2 (00:00.000 / 00:02.748, 97Mb) Sushi: info Downloaded hl7.terminology.r4#6.0.2 (00:02.088 / 00:04.837, 97Mb) Sushi: info Loaded package hl7.terminology.r4#6.0.2 (00:02.173 / 00:07.011, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.455 / 00:07.466, 97Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.554 / 00:08.021, 97Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:08.021, 97Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:02.094 / 00:10.116, 97Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.452 / 00:11.568, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:11.569, 97Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.832 / 00:12.402, 97Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:12.402, 97Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.679 / 00:15.081, 97Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:02.917 / 00:17.999, 97Mb) Sushi: info Converting FSH to FHIR resources... (00:00.070 / 00:18.069, 97Mb) Sushi: error Resolved value "TumorSizeUnitsVS" is not a valid URI. (00:00.123 / 00:18.192, 97Mb) Sushi: File: /scratch/repo/input/fsh/observation.fsh (00:00.000 / 00:18.193, 97Mb) Sushi: Line: 19 (00:00.000 / 00:18.193, 97Mb) Sushi: error Resolved value "TumorSizeUnitsVS" is not a valid URI. (00:00.018 / 00:18.211, 97Mb) Sushi: File: /scratch/repo/input/fsh/observation.fsh (00:00.000 / 00:18.212, 97Mb) Sushi: Line: 25 (00:00.000 / 00:18.212, 97Mb) Sushi: error The min must be <= max, but min 2 is > max 1. (00:00.048 / 00:18.261, 97Mb) Sushi: File: /scratch/repo/input/fsh/patient.fsh (00:00.000 / 00:18.261, 97Mb) Sushi: Line: 7 (00:00.000 / 00:18.261, 97Mb) Sushi: info Converted 2 FHIR StructureDefinitions. (00:00.007 / 00:18.269, 97Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.034 / 00:18.304, 97Mb) Sushi: File: /scratch/repo/input/fsh/observation.fsh (00:00.000 / 00:18.304, 97Mb) Sushi: Line: 31 (00:00.000 / 00:18.304, 97Mb) Sushi: error The element or path you referenced does not exist: nonexistent (00:00.000 / 00:18.305, 97Mb) Sushi: File: /scratch/repo/input/fsh/observation.fsh (00:00.000 / 00:18.305, 97Mb) Sushi: Line: 32 (00:00.000 / 00:18.306, 97Mb) Sushi: error Element Observation.status has minimum cardinality 1 but occurs 0 time(s). (00:00.016 / 00:18.322, 97Mb) Sushi: File: /scratch/repo/input/fsh/observation.fsh (00:00.000 / 00:18.322, 97Mb) Sushi: Line: 28 - 32 (00:00.000 / 00:18.322, 97Mb) Sushi: error The element or path you referenced does not exist: foo.bar (00:00.039 / 00:18.362, 97Mb) Sushi: File: /scratch/repo/input/fsh/patient.fsh (00:00.000 / 00:18.362, 97Mb) Sushi: Line: 12 (00:00.000 / 00:18.363, 97Mb) Sushi: info Converted 2 FHIR instances. (00:00.022 / 00:18.385, 97Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:18.386, 97Mb) Sushi: info Exported 4 FHIR resources as JSON. (00:00.018 / 00:18.405, 97Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:18.407, 97Mb) Sushi: info Generated ImplementationGuide-ch.qligier.fhir.json (00:00.010 / 00:18.417, 97Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:18.417, 97Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:18.419, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.419, 97Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:18.419, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.419, 97Mb) Sushi: | | 2 | 0 | 0 | 0 | | (00:00.000 / 00:18.419, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.420, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.420, 97Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:18.420, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.420, 97Mb) Sushi: | | 0 | 0 | 2 | | (00:00.000 / 00:18.421, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.421, 97Mb) Sushi: | | (00:00.000 / 00:18.421, 97Mb) Sushi: =================================================================== (00:00.000 / 00:18.421, 97Mb) Sushi: | That was a shipwreck! 6 Errors 1 Warning | (00:00.000 / 00:18.421, 97Mb) Sushi: =================================================================== (00:00.000 / 00:18.421, 97Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.038 / 00:18.460, 97Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:18.460, 97Mb) Exception: Process exited with an error: 6 (Exit value: 6) (00:00.000 / 00:18.460, 97Mb) Publishing Content Failed: Process exited with an error: 6 (Exit value: 6) (00:00.000 / 00:18.461, 97Mb) (00:00.000 / 00:18.461, 97Mb) Use -? to get command line help (00:00.000 / 00:18.461, 97Mb) (00:00.000 / 00:18.461, 97Mb) Stack Dump (for debugging): (00:00.000 / 00:18.461, 97Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 6 (Exit value: 6) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2572) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1012) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13036)