INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/openhie/FoodAllergy-webinar --branch master repo DEBUG:root:Time to deadline 35879.996756 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.02446 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.052066 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/openhie/FoodAllergy-webinar/ -out /scratch/repo DEBUG:root:Time to deadline 35871.546399 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (61 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/openhie/FoodAllergy-webinar/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, July 25, 2025, 8:08:14 PM Coordinated Universal Time (2025-07-25T20:08:14Z) Build FHIR IG from /scratch/repo (00:00.035 / 00:00.036, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.006 / 00:00.042, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.045, 97Mb) Run Sushi on /scratch/repo (00:00.003 / 00:00.049, 97Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.664 / 00:00.714, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.714, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.715, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.715, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.715, 113Mb) Sushi: info Extracting FSHOnly configuration from input/food-allergy.xml... (00:00.773 / 00:01.489, 113Mb) Sushi: info Extracted configuration: (00:00.000 / 00:01.490, 113Mb) Sushi: info id: "food-allergy" (00:00.000 / 00:01.491, 113Mb) Sushi: info canonical: "http://ohie.org/fhir/food-allergy" (00:00.000 / 00:01.491, 113Mb) Sushi: info url: "http://ohie.org/fhir/food-allergy/ImplementationGuide/food-allergy" (00:00.000 / 00:01.492, 113Mb) Sushi: info name: "FoodAllergyIG" (00:00.000 / 00:01.492, 113Mb) Sushi: info packageId: "ohie.fhir.food-allergy" (00:00.000 / 00:01.492, 113Mb) Sushi: info version: "0.1.0" (00:00.000 / 00:01.492, 113Mb) Sushi: info status: "draft" (00:00.000 / 00:01.493, 113Mb) Sushi: info fhirVersion[0]: "4.0.1" (00:00.000 / 00:01.493, 113Mb) Sushi: info dependencies: undefined (00:00.000 / 00:01.493, 113Mb) Sushi: info parameters[0]: {"code":"copyrightyear","value":"2019+","fhir_comments":[" copyright year is a mandatory parameter "]} (00:00.000 / 00:01.494, 113Mb) Sushi: info parameters[1]: {"code":"releaselabel","value":"CI Build","fhir_comments":[" releaselabel should be the ballot status for HL7-published IGs. "]} (00:00.000 / 00:01.494, 113Mb) Sushi: info parameters[2]: {"code":"find-other-resources","value":"true"} (00:00.000 / 00:01.494, 113Mb) Sushi: info parameters[3]: {"code":"path-resource","value":"input\\history"} (00:00.000 / 00:01.495, 113Mb) Sushi: info parameters[4]: {"code":"path-resource","value":"input\\scenarios"} (00:00.000 / 00:01.495, 113Mb) Sushi: info parameters[5]: {"code":"path-binary","value":"input\\cql"} (00:00.000 / 00:01.495, 113Mb) Sushi: info parameters[6]: {"code":"path-liquid","value":"templates\\liquid"} (00:00.000 / 00:01.495, 113Mb) Sushi: info FSHOnly: true (00:00.000 / 00:01.496, 113Mb) Sushi: info Importing FSH text... (00:00.000 / 00:01.496, 113Mb) Sushi: info Preprocessed 5 documents with 2 aliases. (00:00.145 / 00:01.641, 113Mb) Sushi: info Imported 3 definitions and 5 instances. (00:00.101 / 00:01.743, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.079 / 00:01.822, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.0 (00:00.643 / 00:02.466, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.0 (00:00.001 / 00:02.467, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.0 (00:00.780 / 00:03.248, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.0 (00:00.003 / 00:03.251, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.0 with 105 resources (00:00.066 / 00:03.318, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.473 / 00:03.791, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:03.792, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.235 / 00:07.028, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.003 / 00:07.032, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.421 / 00:08.453, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.439 / 00:08.893, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.001 / 00:08.894, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.472 / 00:10.366, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:10.368, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.257 / 00:10.626, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:10.626, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.449 / 00:14.076, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:14.078, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.381 / 00:15.459, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.008 / 00:15.467, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.467, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.468, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.468, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.468, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.469, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:15.469, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.022 / 00:15.491, 113Mb) Sushi: info Converted 2 FHIR StructureDefinitions. (00:00.151 / 00:15.643, 113Mb) Sushi: info Converted 1 FHIR ValueSets. (00:00.021 / 00:15.664, 113Mb) Sushi: info Converted 5 FHIR instances. (00:00.544 / 00:16.208, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:16.209, 113Mb) Sushi: info Exported 5 FHIR resources as JSON. (00:00.009 / 00:16.219, 113Mb) Sushi: info Exporting FSH definitions only. No IG related content will be exported. (00:00.002 / 00:16.221, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:16.222, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.223, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:16.223, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.223, 113Mb) Sushi: | | 1 | 0 | 1 | 0 | | (00:00.000 / 00:16.223, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.224, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.224, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:16.224, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.224, 113Mb) Sushi: | | 1 | 0 | 5 | | (00:00.000 / 00:16.224, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.225, 113Mb) Sushi: | | (00:00.000 / 00:16.225, 113Mb) Sushi: =================================================================== (00:00.000 / 00:16.225, 113Mb) Sushi: | You're catching on now! 0 Errors 0 Warnings | (00:00.000 / 00:16.225, 113Mb) Sushi: =================================================================== (00:00.000 / 00:16.225, 113Mb) Load Template from #local-template (00:01.306 / 00:17.532, 85Mb) Load Template from openhie.fhir.template#current (00:00.333 / 00:17.866, 85Mb) Installing openhie.fhir.template#current to the package cache  Fetching:  Installing openhie.fhir.template#current  done.  Load Template from fhir.base.template#current (00:01.539 / 00:19.405, 111Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:03.788 / 00:23.194, 399Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:23.196, 399Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-12971550681956960740.html Connect to Terminology Server at http://tx.fhir.org (00:46.007 / 01:09.204, 272Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.7.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:10.579 / 01:19.784, 364Mb) Load IG (00:00.000 / 01:19.784, 364Mb) Load Content (00:00.001 / 01:19.785, 364Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.075 / 01:19.861, 364Mb) Translating CQL source (00:00.042 / 01:19.903, 372Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 01:19.903, 372Mb) Process Loaded Resources (00:00.268 / 01:20.171, 380Mb) Generating Snapshots (00:00.179 / 01:20.351, 388Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://ohie.org/fhir/food-allergy/package-list.json for version check (00:00.278 / 01:20.629, 420Mb) Processing Conformance Resources (00:00.977 / 01:21.607, 420Mb) Checking Language (00:00.000 / 01:21.607, 420Mb) Load Dependency Info (00:00.000 / 01:21.607, 420Mb) Load Info (00:00.001 / 01:21.609, 420Mb) Load Paths (00:00.000 / 01:21.609, 425Mb) Check R4 / R4B (00:00.000 / 01:21.609, 425Mb) Assign Comparison Ids (00:00.022 / 01:21.632, 425Mb) Propagating status (00:00.000 / 01:21.632, 425Mb) Generating Narratives (00:00.000 / 01:21.632, 425Mb) Validating Conformance Resources (00:00.755 / 01:22.388, 516Mb) Check profiles & code systems (00:09.235 / 01:31.623, 832Mb) Check realm rules (00:00.001 / 01:31.625, 832Mb) Previous Version Comparison (00:00.000 / 01:31.625, 832Mb) Checking for Bundles to sign (00:00.015 / 01:31.641, 832Mb) Validating Resources (00:00.000 / 01:31.641, 832Mb) Processing Provenance Records (00:00.250 / 01:31.891, 840Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:31.892, 840Mb) Generate Native Outputs (00:00.317 / 01:32.210, 840Mb) Run Template (00:00.490 / 01:32.701, 912Mb) Generate HTML Outputs (00:01.227 / 01:33.928, 968Mb) Generate Spreadsheets (00:03.063 / 01:36.991, 466Mb) Generate Summaries (00:01.109 / 01:38.101, 568Mb) Generating Summary Outputs (00:00.000 / 01:38.101, 568Mb) DB Cumulative Time invested: 00:00:00.533 Sending Usage Stats to Server (00:03.794 / 01:41.896, 495Mb) ## Memory (MB): Use = 495, Free = 18512, Total = 19008, Max = 19008 (00:00.005 / 01:41.901, 498Mb) Reclaiming memory... (00:00.000 / 01:41.902, 498Mb) ## Memory (MB): Use = 288, Free = 18719, Total = 19008, Max = 19008 (00:00.398 / 01:42.300, 300Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 01:42.302, 300Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:42.302, 300Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:42.302, 300Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:42.302, 300Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.495 / 01:42.797, 304Mb) Jekyll: Generating... (00:00.000 / 01:42.798, 304Mb) Jekyll: done in 0.38 seconds. (00:00.379 / 01:43.177, 305Mb) Checking Output HTML (00:01.039 / 01:44.217, 472Mb) found 669 files (00:00.005 / 01:44.222, 472Mb) ......................................... ......................................... ... 669 html files, 1 page invalid xhtml (0%) (00:02.276 / 01:46.499, 310Mb) ... 12682 links, 0 broken link (0%) (00:00.000 / 01:46.499, 310Mb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.007 / 01:46.506, 310Mb) (00:00.000 / 01:46.507, 310Mb) Use -? to get command line help (00:00.000 / 01:46.507, 310Mb) (00:00.000 / 01:46.507, 310Mb) Stack Dump (for debugging): (00:00.000 / 01:46.507, 310Mb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:9128) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1199) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1029) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15805)