INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/openehr-fhir/base-spec --branch master repo DEBUG:root:Time to deadline 35879.997408 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.579265 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.307763 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.0 npm notice Changelog: npm notice Run `npm install -g npm@11.6.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/openehr-fhir/base-spec/ -out /scratch/repo DEBUG:root:Time to deadline 35871.90639 seconds FHIR IG Publisher Version 2.0.16 (Git# b88a2ed37ef7). Built 2025-08-27T17:19:52.105Z (9 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/openehr-fhir/base-spec/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Saturday, September 6, 2025, 4:48:41 AM Coordinated Universal Time (2025-09-06T04:48:41Z) Build FHIR IG from /scratch/repo (00:00.030 / 00:00.031, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.033, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.036, 97Mb) Root directory: /scratch/repo (00:00.005 / 00:00.042, 97Mb) Load Template from fhir.base.template#current (00:00.592 / 00:00.634, 37Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:05.176 / 00:05.811, 132Mb) Core Package hl7.fhir.r5.core#5.0.0 (00:00.000 / 00:05.812, 132Mb) Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Running Terminology Log: /tmp/ohfu-fhir-ig-5565454947378194768.html Connect to Terminology Server at http://tx.fhir.org (00:07.072 / 00:12.884, 797Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r5#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r5#6.5.0  done. Load Package hl7.terminology.r5#6.5.0 Installing hl7.fhir.uv.extensions.r5#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r5#5.2.0  done. Load Package hl7.fhir.uv.extensions.r5#5.2.0 Unable to check package currency: hl7.fhir.uv.tools: hl7.fhir.uv.tools Installing hl7.fhir.uv.tools#current to the package cache  Fetching:  Installing hl7.fhir.uv.tools#current  done. Load Package hl7.fhir.uv.tools#current Initialization complete (00:07.457 / 00:20.342, 859Mb) Load IG (00:00.000 / 00:20.343, 859Mb) Load Content (00:00.000 / 00:20.344, 859Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.057 / 00:20.401, 859Mb) Duplicate Resource in IG: StructureDefinition/ACTION. first found in /scratch/repo/input/EHR/ACTION.json (scan folder input/EHR), now in /scratch/repo/input/resources/ACTION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ACTIVITY. first found in /scratch/repo/input/EHR/ACTIVITY.json (scan folder input/EHR), now in /scratch/repo/input/resources/ACTIVITY.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ACTOR. first found in /scratch/repo/input/Demographics/ACTOR.json (scan folder input/Demographics), now in /scratch/repo/input/resources/ACTOR.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ADDRESS. first found in /scratch/repo/input/Demographics/ADDRESS.json (scan folder input/Demographics), now in /scratch/repo/input/resources/ADDRESS.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/AGENT. first found in /scratch/repo/input/Demographics/AGENT.json (scan folder input/Demographics), now in /scratch/repo/input/resources/AGENT.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ARCHETYPED. first found in /scratch/repo/input/Common/ARCHETYPED.json (scan folder input/Common), now in /scratch/repo/input/resources/ARCHETYPED.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ATTESTATION. first found in /scratch/repo/input/Common/ATTESTATION.json (scan folder input/Common), now in /scratch/repo/input/resources/ATTESTATION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/CAPABILITY. first found in /scratch/repo/input/Demographics/CAPABILITY.json (scan folder input/Demographics), now in /scratch/repo/input/resources/CAPABILITY.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/CLUSTER. first found in /scratch/repo/input/Structures/CLUSTER.json (scan folder input/Structures), now in /scratch/repo/input/resources/CLUSTER.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/COMPOSITION. first found in /scratch/repo/input/EHR/COMPOSITION.json (scan folder input/EHR), now in /scratch/repo/input/resources/COMPOSITION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/CONTACT. first found in /scratch/repo/input/Demographics/CONTACT.json (scan folder input/Demographics), now in /scratch/repo/input/resources/CONTACT.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/CONTRIBUTION. first found in /scratch/repo/input/Common/CONTRIBUTION.json (scan folder input/Common), now in /scratch/repo/input/resources/CONTRIBUTION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/EHR. first found in /scratch/repo/input/EHR/EHR.json (scan folder input/EHR), now in /scratch/repo/input/resources/EHR.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ELEMENT. first found in /scratch/repo/input/Structures/ELEMENT.json (scan folder input/Structures), now in /scratch/repo/input/resources/ELEMENT.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ENTRY. first found in /scratch/repo/input/EHR/ENTRY.json (scan folder input/EHR), now in /scratch/repo/input/resources/ENTRY.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/EVALUATION. first found in /scratch/repo/input/EHR/EVALUATION.json (scan folder input/EHR), now in /scratch/repo/input/resources/EVALUATION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/EVENT. first found in /scratch/repo/input/Structures/EVENT.json (scan folder input/Structures), now in /scratch/repo/input/resources/EVENT.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/FOLDER. first found in /scratch/repo/input/Common/FOLDER.json (scan folder input/Common), now in /scratch/repo/input/resources/FOLDER.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/GROUP. first found in /scratch/repo/input/Demographics/GROUP.json (scan folder input/Demographics), now in /scratch/repo/input/resources/GROUP.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/HISTORY. first found in /scratch/repo/input/Structures/HISTORY.json (scan folder input/Structures), now in /scratch/repo/input/resources/HISTORY.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/INSTRUCTION. first found in /scratch/repo/input/EHR/INSTRUCTION.json (scan folder input/EHR), now in /scratch/repo/input/resources/INSTRUCTION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ITEM. first found in /scratch/repo/input/Structures/ITEM.json (scan folder input/Structures), now in /scratch/repo/input/resources/ITEM.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/LINK. first found in /scratch/repo/input/Common/LINK.json (scan folder input/Common), now in /scratch/repo/input/resources/LINK.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/LOCATABLE. first found in /scratch/repo/input/Common/LOCATABLE.json (scan folder input/Common), now in /scratch/repo/input/resources/LOCATABLE.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/OBSERVATION. first found in /scratch/repo/input/EHR/OBSERVATION.json (scan folder input/EHR), now in /scratch/repo/input/resources/OBSERVATION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ORGANISATION. first found in /scratch/repo/input/Demographics/ORGANISATION.json (scan folder input/Demographics), now in /scratch/repo/input/resources/ORGANISATION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/PARTICIPATION. first found in /scratch/repo/input/Common/PARTICIPATION.json (scan folder input/Common), now in /scratch/repo/input/resources/PARTICIPATION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/PARTY. first found in /scratch/repo/input/Demographics/PARTY.json (scan folder input/Demographics), now in /scratch/repo/input/resources/PARTY.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/PATHABLE. first found in /scratch/repo/input/Common/PATHABLE.json (scan folder input/Common), now in /scratch/repo/input/resources/PATHABLE.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/PERSON. first found in /scratch/repo/input/Demographics/PERSON.json (scan folder input/Demographics), now in /scratch/repo/input/resources/PERSON.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/ROLE. first found in /scratch/repo/input/Demographics/ROLE.json (scan folder input/Demographics), now in /scratch/repo/input/resources/ROLE.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/SECTION. first found in /scratch/repo/input/EHR/SECTION.json (scan folder input/EHR), now in /scratch/repo/input/resources/SECTION.json (scan folder input/resources) Duplicate Resource in IG: StructureDefinition/VERSION. first found in /scratch/repo/input/Common/VERSION.json (scan folder input/Common), now in /scratch/repo/input/resources/VERSION.json (scan folder input/resources) Process Loaded Resources (00:03.875 / 00:24.276, 740Mb) Generating Snapshots (00:01.249 / 00:25.526, 1012Mb) Publishing Content Failed: Error generating snapshot for /scratch/repo/input/resources/DATA_VALUE(DATA_VALUE): Cannot find or generate snapshot for base definition (http://openehr.org/fhir/StructureDefinition/OPENEHR_DEFINITIONS from http://openehr.org/fhir/StructureDefinition/DATA_VALUE) (00:01.456 / 00:26.983, 509Mb) (00:00.000 / 00:26.983, 509Mb) Use -? to get command line help (00:00.000 / 00:26.983, 509Mb) (00:00.000 / 00:26.983, 509Mb) Stack Dump (for debugging): (00:00.000 / 00:26.983, 509Mb) java.lang.Exception: Error generating snapshot for /scratch/repo/input/resources/DATA_VALUE(DATA_VALUE): Cannot find or generate snapshot for base definition (http://openehr.org/fhir/StructureDefinition/OPENEHR_DEFINITIONS from http://openehr.org/fhir/StructureDefinition/DATA_VALUE) at org.hl7.fhir.igtools.publisher.PublisherBase.generateSnapshots(PublisherBase.java:808) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadConformance1(PublisherIGLoader.java:3845) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:1993) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:354) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481) Caused by: java.lang.Exception: Cannot find or generate snapshot for base definition (http://openehr.org/fhir/StructureDefinition/OPENEHR_DEFINITIONS from http://openehr.org/fhir/StructureDefinition/DATA_VALUE) at org.hl7.fhir.igtools.publisher.PublisherBase.generateSnapshot(PublisherBase.java:693) at org.hl7.fhir.igtools.publisher.PublisherBase.generateSnapshots(PublisherBase.java:806) ... 5 more