INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/oijauregui/ehdsimaging --branch profile_name_changes repo DEBUG:root:Time to deadline 35879.998045 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35848.059272 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35846.939096 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.1 npm notice Changelog: npm notice Run `npm install -g npm@11.6.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/oijauregui/ehdsimaging/ -out /scratch/repo DEBUG:root:Time to deadline 35840.034976 seconds FHIR IG Publisher Version 2.0.18 (Git# 073deb2e0664). Built 2025-10-01T03:24:07.806Z (58 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/oijauregui/ehdsimaging/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, October 3, 2025, 2:22:07 PM Coordinated Universal Time (2025-10-03T14:22:07Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.028, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.030, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.035, 97Mb) Found dependency on hl7.terminology.r5#6.3.0 in Sushi config. Pre-installing (00:00.006 / 00:00.041, 97Mb) Installing hl7.terminology.r5#6.3.0 to the package cache  Fetching:  Installing hl7.terminology.r5#6.3.0  done. Found dependency on hl7.fhir.uv.extensions#5.3.0-ballot in Sushi config. Pre-installing (00:02.761 / 00:02.803, 220Mb) Installing hl7.fhir.uv.extensions#5.3.0-ballot to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#5.3.0-ballot  done. Found dependency on hl7.fhir.uv.ips#1.1.0 in Sushi config. Pre-installing (00:00.970 / 00:03.774, 268Mb) Installing hl7.fhir.uv.ips#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ips#1.1.0  done. Found dependency on hl7.fhir.eu.extensions#0.1.1-ballot in Sushi config. Pre-installing (00:01.937 / 00:05.712, 294Mb) Installing hl7.fhir.eu.extensions#0.1.1-ballot to the package cache  Fetching:  Installing hl7.fhir.eu.extensions#0.1.1-ballot  done. Found dependency on hl7.fhir.eu.base-r5#0.1.0-ballot in Sushi config. Pre-installing (00:00.285 / 00:05.998, 299Mb) Installing hl7.fhir.eu.base-r5#0.1.0-ballot to the package cache  Fetching:  Installing hl7.fhir.eu.base-r5#0.1.0-ballot  done. Run Sushi on /scratch/repo (00:00.452 / 00:06.450, 308Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.599 / 00:07.050, 316Mb) Sushi: info Arguments: (00:00.000 / 00:07.050, 316Mb) Sushi: info --require-latest (00:00.000 / 00:07.051, 316Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:07.051, 316Mb) Sushi: info /scratch/repo (00:00.000 / 00:07.051, 316Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.709 / 00:07.761, 316Mb) Sushi: info Importing FSH text... (00:00.125 / 00:07.886, 316Mb) Sushi: info Preprocessed 80 documents with 156 aliases. (00:00.556 / 00:08.443, 316Mb) Sushi: info Imported 96 definitions and 23 instances. (00:00.543 / 00:08.986, 316Mb) Sushi: info Resolved hl7.fhir.uv.tools.r5#latest to concrete version 0.8.0 (00:00.674 / 00:09.661, 316Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r5#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r5/0.8.0 (00:00.001 / 00:09.662, 316Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r5#0.8.0 (00:00.993 / 00:10.656, 316Mb) Sushi: info Cached hl7.fhir.uv.tools.r5#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r5#0.8.0 (00:00.004 / 00:10.660, 316Mb) Sushi: info Loaded hl7.fhir.uv.tools.r5#0.8.0 with 107 resources (00:00.068 / 00:10.729, 316Mb) Sushi: info Loaded hl7.terminology.r5#6.3.0 with 4374 resources (00:01.375 / 00:12.105, 316Mb) Sushi: info Loaded hl7.fhir.uv.extensions#5.3.0-ballot with 823 resources (00:00.310 / 00:12.415, 316Mb) Sushi: info Loaded hl7.fhir.uv.ips#1.1.0 with 104 resources (00:00.075 / 00:12.490, 316Mb) Sushi: info Loaded hl7.fhir.eu.extensions#0.1.1-ballot with 7 resources (00:00.003 / 00:12.494, 316Mb) Sushi: info Loaded hl7.fhir.eu.base-r5#0.1.0-ballot with 22 resources (00:00.016 / 00:12.510, 316Mb) Sushi: info Attempting to download hl7.fhir.r5.core#5.0.0 from https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.000 / 00:12.510, 316Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:04.749 / 00:17.259, 324Mb) Sushi: info Cached hl7.fhir.r5.core#5.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r5.core#5.0.0 (00:00.004 / 00:17.264, 324Mb) Sushi: info Loaded hl7.fhir.r5.core#5.0.0 with 2968 resources (00:01.030 / 00:18.294, 324Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 59 resources (00:00.028 / 00:18.322, 324Mb) Sushi: info Converting FSH to FHIR resources... (00:00.016 / 00:18.339, 324Mb) Sushi: error Parent ImAdverseEvent not found for Report_ImAdverseEvent (00:20.970 / 00:39.310, 324Mb) Sushi: File: /scratch/repo/input/fsh/obligations/Report_ImAdverseEvent.fsh (00:00.000 / 00:39.310, 324Mb) Sushi: Line: 4 - 28 (00:00.000 / 00:39.310, 324Mb) Sushi: error Parent ImComposition not found for Report_ImComposition (00:00.001 / 00:39.312, 324Mb) Sushi: File: /scratch/repo/input/fsh/obligations/Report_ImComposition.fsh (00:00.000 / 00:39.312, 324Mb) Sushi: Line: 4 - 172 (00:00.000 / 00:39.312, 324Mb) Sushi: error Parent ImDiagnosticReport not found for Report_ImDiagnosticReport (00:00.001 / 00:39.313, 324Mb) Sushi: File: /scratch/repo/input/fsh/obligations/Report_ImDiagnosticReport.fsh (00:00.000 / 00:39.314, 324Mb) Sushi: Line: 4 - 76 (00:00.000 / 00:39.314, 324Mb) Sushi: info Converted 80 FHIR StructureDefinitions. (00:11.511 / 00:50.825, 324Mb) Sushi: info Converted 4 FHIR CodeSystems. (00:00.123 / 00:50.949, 324Mb) Sushi: info Converted 12 FHIR ValueSets. (00:00.341 / 00:51.290, 324Mb) Sushi: info Converted 23 FHIR instances. (00:03.093 / 00:54.384, 324Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.014 / 00:54.398, 324Mb) Sushi: info Exported 106 FHIR resources as JSON. (00:00.399 / 00:54.798, 324Mb) Sushi: info Assembling Implementation Guide sources... (00:00.003 / 00:54.802, 324Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.eu.imaging-r5.json (00:00.078 / 00:54.880, 324Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:54.881, 324Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:54.882, 324Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:54.882, 324Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:54.883, 324Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:54.883, 324Mb) Sushi: | | 71 | 6 | 0 | 0 | | (00:00.000 / 00:54.883, 324Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:54.883, 324Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:54.883, 324Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:54.884, 324Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:54.884, 324Mb) Sushi: | | 12 | 4 | 23 | | (00:00.000 / 00:54.884, 324Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:54.884, 324Mb) Sushi: | | (00:00.000 / 00:54.884, 324Mb) Sushi: =================================================================== (00:00.000 / 00:54.884, 324Mb) Sushi: | You're up to urchin in mistakes. 3 Errors 0 Warnings | (00:00.000 / 00:54.885, 324Mb) Sushi: =================================================================== (00:00.000 / 00:54.885, 324Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.050 / 00:54.935, 324Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:54.935, 324Mb) Exception: Process exited with an error: 3 (Exit value: 3) (00:00.000 / 00:54.935, 324Mb) Publishing Content Failed: Process exited with an error: 3 (Exit value: 3) (00:00.000 / 00:54.936, 324Mb) (00:00.000 / 00:54.936, 324Mb) Use -? to get command line help (00:00.000 / 00:54.936, 324Mb) (00:00.000 / 00:54.936, 324Mb) Stack Dump (for debugging): (00:00.000 / 00:54.936, 324Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 3 (Exit value: 3) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:137) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:208) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482)