North West Genomic Medicine Service Alliance
0.0.1 - ci-build United Kingdom flag

DRAFT Implementation Guide

This is for collaboration and discussion purposes and is subject to change.

North West Genomic Medicine Service Alliance, published by NHS North West GMSA. This guide is not an authorized publication; it is the continuous build for version 0.0.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/LTW/ and changes regularly. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Laboratory Testing Workflow (LTW)
... 3 Patient Identifier Cross-referencing (PIX)
... 4 Healthcare Provider Directory (HPD)
... 5 Health Information Exchange (HIE)
... 6 Placer Order Management [LAB-1]
... 7 Filler Order Management [LAB-2]
... 8 Order Results Management [LAB-3]
... 9 Work Order Management [LAB-4]
... 10 Test Results Management [LAB-5]
... 11 Genomic Test Order
... 12 Genomic Test Report
... 13 Overview
... 14 HL7 v2 Artefacts
... 15 Architecture
... 16 Testing
... 17 Support
... 18 Authorisation (OAuth2)
... 19 Artifacts Summary
.... 19.1 Automation Manager
.... 19.2 Clinical Document
.... 19.3 Intermediary
.... 19.4 Order Filler
.... 19.5 Order Placer
.... 19.6 Order Result Tracker
.... 19.7 Patient Identity Source
.... 19.8 Provider Information Source
.... 19.9 CapabilityStatement for NW GMSA Regional Integration Engine for Genomics
.... 19.10 Process Message
.... 19.11 Message Definition - Laboratory Order
.... 19.12 Message Definition - Unsolicited Observation
.... 19.13 Master HL7 genetic variant reporting panel
.... 19.14 North West Genomics Test Order
.... 19.15 Binary
.... 19.16 Composition
.... 19.17 Diagnostic Report
.... 19.18 DocumentReference
.... 19.19 Encounter
.... 19.20 MessageHeader
.... 19.21 Observation
.... 19.22 Observation Panel
.... 19.23 OperationOutcome
.... 19.24 Organization
.... 19.25 Patient
.... 19.26 Practitioner
.... 19.27 PractitionerRole
.... 19.28 Questionnaire
.... 19.29 QuestionnaireResponse
.... 19.30 ServiceRequest
.... 19.31 Specimen
.... 19.32 Accession Number
.... 19.33 Attachment
.... 19.34 CodeableReference
.... 19.35 Correlation Identifier
.... 19.36 England Practitioner Identifier
.... 19.37 Filler Order Number
.... 19.38 Genomics Pedigree Number
.... 19.39 Medical Record Number
.... 19.40 NHS Number
.... 19.41 Organisation Code
.... 19.42 Organisation Site Code
.... 19.43 Placer Group Number
.... 19.44 Placer Order Number
.... 19.45 Visit Number
.... 19.46 ExtCodeableReference
.... 19.47 Admission Method
.... 19.48 Admission Source
.... 19.49 Discharge Destination
.... 19.50 Discharge Disposition
.... 19.51 DocumentEntry Class
.... 19.52 DocumentEntry mimeType
.... 19.53 DocumentEntry Type
.... 19.54 Ethnicity
.... 19.55 Facility Type
.... 19.56 Genomic Cancer Test Directory
.... 19.57 Genomic Rare and Inherited Disease Test Directory
.... 19.58 NW IdentifierType
.... 19.59 Practitioner Identifiers
.... 19.60 Request Priority
.... 19.61 Service
.... 19.62 Specialty
.... 19.63 Specimen Type
.... 19.64 Yes/No
.... 19.65 Yes/No/Unknown
.... 19.66 Genomic Test Directory
.... 19.67 UK Professional License
.... 19.68 Genomic Order Entry Optional Questions
.... 19.69 Parameters Expansion Profile
.... 19.70 Binary Genomic Record of Discussion Example
.... 19.71 Bundle 'Message' - Genomics Order Acknowledgement
.... 19.72 Bundle 'Message' - Genomics Order with Attachment
.... 19.73 Bundle 'Message' - Genomics Order with Coded Entries
.... 19.74 Bundle 'SearchSet' - Genomics Order
.... 19.75 Document Reference Laboratory Order
.... 19.76 High level Encounter 'episode/stay' Example
.... 19.77 Message Header - Genomic Order
.... 19.78 Message Header - Genomic Order Acknowledgement
.... 19.79 Order Entry Form Example
.... 19.80 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 19.81 PractitionerRole C3456789 Example
.... 19.82 ServiceRequest Attachment Example
.... 19.83 ServiceRequest Coded Entries Example
.... 19.84 Specimen Example
.... 19.85 Binary Genomic Report Example
.... 19.86 Bundle 'Message' - Genomics Report
.... 19.87 Diagnostic Report Example.
.... 19.88 Document Reference Laboratory Report
.... 19.89 Message Header - Genomic Report
.... 19.90 Bundle `Document` - Genetic Report
.... 19.91 Composition - Genomics Report Octavia CHISLETT
.... 19.92 EPIC-OBR-1 Example
.... 19.93 EPIC-OBX-10 Example
.... 19.94 EPIC-OBX-11 Example
.... 19.95 EPIC-OBX-2 Example
.... 19.96 EPIC-OBX-4 Example
.... 19.97 EPIC-OBX-6 Example
.... 19.98 EPIC-OBX-7 Example
.... 19.99 EPIC-OBX-8 Example
.... 19.100 Genomic Referral Category
.... 19.101 High infection risk sample
.... 19.102 Informed Consent
.... 19.103 OBX Pregnancy
.... 19.104 Supervising Clinician
.... 19.105 837d78a0-30cd-478c-83a8-f83d16fc4443