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DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35836.388338 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35835.419652 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.4.2 npm notice Changelog: npm notice Run `npm install -g npm@11.4.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/nmdp-ig/matchsync-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35828.769704 seconds FHIR IG Publisher Version 2.0.8 (Git# e7d965b03a28). Built 2025-06-27T22:18:09.321Z (10 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/nmdp-ig/matchsync-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, July 8, 2025, 4:02:12 PM Coordinated Universal Time (2025-07-08T16:02:12Z) Build FHIR IG from /scratch/repo (00:00.024 / 00:00.025, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.027, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.030, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.770 / 00:00.801, 37Mb) Load Template from fhir.base.template#current (00:00.720 / 00:01.522, 94Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:11.616 / 00:13.138, 241Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.042 / 00:13.180, 241Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Running Terminology Log: /tmp/ohfu-fhir-ig-14267223515592242299.html Connect to Terminology Server at http://tx.fhir.org (00:28.275 / 00:41.456, 730Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.us.core#4.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#4.0.0  done. Installing hl7.fhir.uv.bulkdata#1.0.1 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#1.0.1  done. Load Package hl7.fhir.uv.bulkdata#1.0.1 Installing us.nlm.vsac#0.3.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.3.0  done. Load Package us.nlm.vsac#0.3.0 Load Package hl7.fhir.us.core#4.0.0 Installing hl7.fhir.us.mcode#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.mcode#2.0.0  done. Load Package hl7.fhir.us.mcode#2.0.0 Installing hl7.fhir.uv.genomics-reporting#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.genomics-reporting#2.0.0  done. Load Package hl7.fhir.uv.genomics-reporting#2.0.0 Installing hl7.fhir.uv.tools.r4#0.5.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.5.0  done. Load Package hl7.fhir.uv.tools.r4#0.5.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (01:27.267 / 02:08.723, 1Gb) Load IG (00:00.000 / 02:08.723, 1Gb) Load Content (00:00.001 / 02:08.725, 1Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.188 / 02:08.914, 1Gb) Process Loaded Resources (00:00.085 / 02:08.999, 1Gb) Generating Snapshots (00:00.125 / 02:09.124, 1Gb) Publishing Content Failed: Unable to find the source file for StructureDefinition/hla-genotype: not specified, so tried StructureDefinition-hla-genotype.xml, hla-genotype.StructureDefinition.xml, StructureDefinition-hla-genotype.json, StructureDefinition/hla-genotype.xml, StructureDefinition/hla-genotype.json, hla-genotype.xml, and hla-genotype.json (and lowercase resource name variants) in dirs [/scratch/repo/fsh-generated/resources, /scratch/repo/fsh-generated/resources] (00:00.038 / 02:09.162, 1Gb) (00:00.000 / 02:09.162, 1Gb) Use -? to get command line help (00:00.000 / 02:09.163, 1Gb) (00:00.000 / 02:09.163, 1Gb) Stack Dump (for debugging): (00:00.000 / 02:09.163, 1Gb) java.lang.Exception: Unable to find the source file for StructureDefinition/hla-genotype: not specified, so tried StructureDefinition-hla-genotype.xml, hla-genotype.StructureDefinition.xml, StructureDefinition-hla-genotype.json, StructureDefinition/hla-genotype.xml, StructureDefinition/hla-genotype.json, hla-genotype.xml, and hla-genotype.json (and lowercase resource name variants) in dirs [/scratch/repo/fsh-generated/resources, /scratch/repo/fsh-generated/resources] at org.hl7.fhir.igtools.publisher.SimpleFetcher.fetch(SimpleFetcher.java:261) at org.hl7.fhir.igtools.publisher.Publisher.load(Publisher.java:4987) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1213) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1074) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15771)