INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard --branch validation-fixing repo DEBUG:root:Time to deadline 35879.997955 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.77723 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.757592 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 5s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard/ -out /scratch/repo DEBUG:root:Time to deadline 35872.261442 seconds FHIR IG Publisher Version 2.0.26 (Git# 0a43ac207d1f). Built 2025-11-06T09:21:35.314Z (5 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, November 11, 2025, 9:39:59 AM Coordinated Universal Time (2025-11-11T09:39:59Z) Build FHIR IG from /scratch/repo (00:00.024 / 00:00.025, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.030, 97Mb) Found dependency on de.basisprofil.r4#1.5.3 in Sushi config. Pre-installing (00:00.004 / 00:00.035, 97Mb) Installing de.basisprofil.r4#1.5.3 to the package cache  Fetching:  Installing de.basisprofil.r4#1.5.3  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0-ballot in Sushi config. Pre-installing (00:02.331 / 00:02.367, 71Mb) Installing de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0-ballot to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0-ballot  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.consent#2025.0.x in Sushi config. Pre-installing (00:00.874 / 00:03.241, 80Mb) Installing de.medizininformatikinitiative.kerndatensatz.consent#2025.0.x to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.diagnose#2025.0.x in Sushi config. Pre-installing (00:00.426 / 00:03.668, 84Mb) Installing de.medizininformatikinitiative.kerndatensatz.diagnose#2025.0.x to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.diagnose#2025.0.1  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.fall#2025.0.x in Sushi config. Pre-installing (00:00.315 / 00:03.983, 95Mb) Installing de.medizininformatikinitiative.kerndatensatz.fall#2025.0.x to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.fall#2025.0.1  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.medikation#2025.0.x in Sushi config. Pre-installing (00:00.422 / 00:04.405, 100Mb) Installing de.medizininformatikinitiative.kerndatensatz.medikation#2025.0.x to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.medikation#2025.0.1  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.meta#2025.0.x in Sushi config. Pre-installing (00:00.640 / 00:05.046, 112Mb) Installing de.medizininformatikinitiative.kerndatensatz.meta#2025.0.x to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.meta#2025.0.3  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.0-ballot.2 in Sushi config. Pre-installing (00:01.266 / 00:06.312, 135Mb) Installing de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.0-ballot.2 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.0-ballot.2  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-ballot in Sushi config. Pre-installing (00:01.304 / 00:07.616, 151Mb) Installing de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-ballot to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-ballot  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot in Sushi config. Pre-installing (00:02.924 / 00:10.541, 199Mb) Installing de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.person#2025.0.x in Sushi config. Pre-installing (00:00.753 / 00:11.294, 207Mb) Installing de.medizininformatikinitiative.kerndatensatz.person#2025.0.x to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.person#2025.0.1  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.prozedur#2025.0.x in Sushi config. Pre-installing (00:00.399 / 00:11.694, 216Mb) Installing de.medizininformatikinitiative.kerndatensatz.prozedur#2025.0.x to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.prozedur#2025.0.1  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot in Sushi config. Pre-installing (00:00.309 / 00:12.004, 216Mb) Installing de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot  done. Found dependency on hl7.fhir.uv.genomics-reporting#3.0.0 in Sushi config. Pre-installing (00:00.470 / 00:12.475, 228Mb) Installing hl7.fhir.uv.genomics-reporting#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.genomics-reporting#3.0.0  done. Run Sushi on /scratch/repo (00:01.743 / 00:14.219, 247Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.582 / 00:14.801, 248Mb) Sushi: info Arguments: (00:00.000 / 00:14.802, 248Mb) Sushi: info --require-latest (00:00.000 / 00:14.802, 248Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:14.802, 248Mb) Sushi: info /scratch/repo (00:00.000 / 00:14.802, 248Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.887 / 00:15.690, 248Mb) Sushi: info Importing FSH text... (00:00.125 / 00:15.816, 248Mb) Sushi: info Preprocessed 194 documents with 120 aliases. (00:00.681 / 00:16.497, 248Mb) Sushi: info Imported 108 definitions and 198 instances. (00:00.784 / 00:17.282, 248Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.112 / 00:17.394, 248Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.617 / 00:18.012, 248Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.000 / 00:18.013, 248Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.829 / 00:18.842, 248Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.007 / 00:18.850, 248Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.054 / 00:18.905, 248Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.478 / 00:19.383, 248Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:19.384, 248Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.918 / 00:22.302, 255Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:22.303, 255Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.344 / 00:23.648, 255Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.454 / 00:24.102, 255Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:24.103, 255Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.728 / 00:25.831, 255Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:25.832, 255Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.240 / 00:26.073, 255Mb) Sushi: info Loaded de.basisprofil.r4#1.5.3 with 166 resources (00:00.043 / 00:26.117, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0-ballot with 60 resources (00:00.028 / 00:26.145, 255Mb) Sushi: info Resolved de.medizininformatikinitiative.kerndatensatz.consent#2025.0.x to concrete version 2025.0.4 (00:00.470 / 00:26.615, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4 with 15 resources (00:00.005 / 00:26.620, 255Mb) Sushi: info Resolved de.medizininformatikinitiative.kerndatensatz.diagnose#2025.0.x to concrete version 2025.0.1 (00:00.458 / 00:27.078, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.diagnose#2025.0.1 with 10 resources (00:00.010 / 00:27.089, 255Mb) Sushi: info Resolved de.medizininformatikinitiative.kerndatensatz.fall#2025.0.x to concrete version 2025.0.1 (00:00.491 / 00:27.580, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.fall#2025.0.1 with 11 resources (00:00.007 / 00:27.588, 255Mb) Sushi: info Resolved de.medizininformatikinitiative.kerndatensatz.medikation#2025.0.x to concrete version 2025.0.1 (00:00.456 / 00:28.044, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.medikation#2025.0.1 with 16 resources (00:00.020 / 00:28.065, 255Mb) Sushi: info Resolved de.medizininformatikinitiative.kerndatensatz.meta#2025.0.x to concrete version 2025.0.3 (00:00.458 / 00:28.524, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.meta#2025.0.3 with 171 resources (00:00.041 / 00:28.565, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.0-ballot.2 with 43 resources (00:00.031 / 00:28.597, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-ballot with 253 resources (00:00.141 / 00:28.739, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot with 30 resources (00:00.025 / 00:28.764, 255Mb) Sushi: info Resolved de.medizininformatikinitiative.kerndatensatz.person#2025.0.x to concrete version 2025.0.1 (00:00.479 / 00:29.243, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.person#2025.0.1 with 9 resources (00:00.010 / 00:29.254, 255Mb) Sushi: info Resolved de.medizininformatikinitiative.kerndatensatz.prozedur#2025.0.x to concrete version 2025.0.1 (00:00.476 / 00:29.730, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.prozedur#2025.0.1 with 9 resources (00:00.005 / 00:29.736, 255Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot with 42 resources (00:00.013 / 00:29.749, 255Mb) Sushi: info Loaded hl7.fhir.uv.genomics-reporting#3.0.0 with 93 resources (00:00.053 / 00:29.803, 255Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:29.803, 255Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.461 / 00:33.265, 255Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:33.266, 255Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.164 / 00:34.431, 255Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.011 / 00:34.442, 255Mb) Sushi: info Converting FSH to FHIR resources... (00:00.019 / 00:34.462, 255Mb) Sushi: error Structure Definition https://www.medizininformatik-initiative.de/fhir/modul-studie/StructureDefinition/mii-pr-studie-studie is missing a snapshot. Snapshot is required for import. (00:02.192 / 00:36.654, 255Mb) Sushi: File: /scratch/repo/input/fsh/profiles/Beschluss-Therapieplan/mii-pr-mtb-studie.fsh (00:00.000 / 00:36.654, 255Mb) Sushi: Line: 2 - 26 (00:00.000 / 00:36.655, 255Mb) Sushi: info Converted 61 FHIR StructureDefinitions. (00:08.377 / 00:45.032, 255Mb) Sushi: info Converted 19 FHIR CodeSystems. (00:00.875 / 00:45.908, 255Mb) Sushi: info Converted 28 FHIR ValueSets. (00:01.474 / 00:47.382, 255Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-cldn6 (00:11.586 / 00:58.968, 255Mb) Sushi: File: /scratch/repo/input/fsh/examples/bundle/mii-exa-mtb-kim-musterperson-bundle.fsh (00:00.000 / 00:58.968, 255Mb) Sushi: Line: 8 - 173 (00:00.000 / 00:58.969, 255Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-cldn6 (00:01.485 / 01:00.454, 255Mb) Sushi: File: /scratch/repo/input/fsh/examples/bundle/mii-exa-mtb-technical-test-bundle.fsh (00:00.000 / 01:00.455, 255Mb) Sushi: Line: 1 - 270 (00:00.000 / 01:00.455, 255Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-cldn6 (00:00.404 / 01:00.859, 255Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:00.860, 255Mb) Sushi: Line: 18 - 71 (00:00.000 / 01:00.860, 255Mb) Sushi: error Structure Definition https://www.medizininformatik-initiative.de/fhir/modul-studie/StructureDefinition/mii-pr-studie-beteiligte-person is missing a snapshot. Snapshot is required for import. (00:00.324 / 01:01.185, 255Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:01.185, 255Mb) Sushi: Line: 160 - 165 (00:00.000 / 01:01.185, 255Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-tedova (00:00.283 / 01:01.469, 255Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:01.469, 255Mb) Sushi: Line: 316 - 323 (00:00.000 / 01:01.469, 255Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-ccne1 (00:00.069 / 01:01.539, 255Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:01.539, 255Mb) Sushi: Line: 337 - 342 (00:00.000 / 01:01.539, 255Mb) Sushi: info Converted 198 FHIR instances. (00:05.597 / 01:07.137, 255Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.004 / 01:07.141, 255Mb) Sushi: info Exported 299 FHIR resources as JSON. (00:00.615 / 01:07.756, 255Mb) Sushi: info Assembling Implementation Guide sources... (00:00.008 / 01:07.764, 255Mb) Sushi: info Generated ImplementationGuide-mii-kerndatensatzmodul-molekulares-tumorboard.json (00:00.040 / 01:07.805, 255Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:07.805, 255Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 01:07.807, 255Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.807, 260Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:07.807, 260Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:07.807, 260Mb) Sushi: | | 48 | 11 | 1 | 0 | | (00:00.000 / 01:07.807, 260Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.807, 260Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.807, 260Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:07.807, 260Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:07.807, 260Mb) Sushi: | | 28 | 19 | 192 | | (00:00.000 / 01:07.807, 260Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.808, 260Mb) Sushi: | | (00:00.000 / 01:07.808, 260Mb) Sushi: =================================================================== (00:00.000 / 01:07.808, 260Mb) Sushi: | Some-fin went wrong... 7 Errors 0 Warnings | (00:00.000 / 01:07.808, 260Mb) Sushi: =================================================================== (00:00.000 / 01:07.808, 260Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.042 / 01:07.850, 260Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 01:07.850, 260Mb) Exception: Process exited with an error: 7 (Exit value: 7) (00:00.000 / 01:07.851, 260Mb) Publishing Content Failed: Process exited with an error: 7 (Exit value: 7) (00:00.000 / 01:07.851, 260Mb) (00:00.000 / 01:07.851, 260Mb) Use -? to get command line help (00:00.000 / 01:07.851, 260Mb) (00:00.000 / 01:07.851, 260Mb) Stack Dump (for debugging): (00:00.000 / 01:07.851, 260Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 7 (Exit value: 7) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:143) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:222) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1579)