INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard --branch v2026.0.0 repo DEBUG:root:Time to deadline 35879.99791 seconds Cloning into 'repo'... Note: switching to '88f51dc06981dd9ed9f898e881f8b0a3e28c8b51'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35877.421195 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.252307 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard/ -out /scratch/repo DEBUG:root:Time to deadline 35869.952068 seconds FHIR IG Publisher Version 2.0.29 (Git# 826a7eb003d6). Built 2025-12-17T01:19:30.102Z (34 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, January 20, 2026, 2:11:18 PM Coordinated Universal Time (2026-01-20T14:11:18Z) Build FHIR IG from /scratch/repo (00:00.024 / 00:00.025, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.027, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.030, 97Mb) Found dependency on de.basisprofil.r4#1.5.4 in Sushi config. Pre-installing (00:00.010 / 00:00.040, 97Mb) Installing de.basisprofil.r4#1.5.4 to the package cache  Fetching:  Installing de.basisprofil.r4#1.5.4  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0 in Sushi config. Pre-installing (00:03.677 / 00:03.718, 96Mb) Installing de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4 in Sushi config. Pre-installing (00:00.927 / 00:04.646, 112Mb) Installing de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.base#2026.0.0 in Sushi config. Pre-installing (00:00.339 / 00:04.985, 120Mb) Installing de.medizininformatikinitiative.kerndatensatz.base#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.base#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0 in Sushi config. Pre-installing (00:01.326 / 00:06.312, 144Mb) Installing de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0 in Sushi config. Pre-installing (00:00.902 / 00:07.214, 160Mb) Installing de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4 in Sushi config. Pre-installing (00:01.847 / 00:09.061, 192Mb) Installing de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0 in Sushi config. Pre-installing (00:01.616 / 00:10.678, 224Mb) Installing de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0 in Sushi config. Pre-installing (00:05.303 / 00:15.981, 328Mb) Installing de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.studie#2026.0.1 in Sushi config. Pre-installing (00:01.017 / 00:16.999, 344Mb) Installing de.medizininformatikinitiative.kerndatensatz.studie#2026.0.1 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.studie#2026.0.1  done. Found dependency on hl7.fhir.uv.genomics-reporting#3.0.0 in Sushi config. Pre-installing (00:00.775 / 00:17.775, 352Mb) Installing hl7.fhir.uv.genomics-reporting#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.genomics-reporting#3.0.0  done. Run Sushi on /scratch/repo (00:02.827 / 00:20.602, 392Mb) Sushi: info Running SUSHI v3.17.0 (implements FHIR Shorthand specification v3.0.0) (00:00.727 / 00:21.329, 392Mb) Sushi: info Arguments: (00:00.000 / 00:21.330, 392Mb) Sushi: info --require-latest (00:00.000 / 00:21.330, 392Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:21.330, 392Mb) Sushi: info /scratch/repo (00:00.000 / 00:21.330, 392Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.694 / 00:22.025, 392Mb) Sushi: info Importing FSH text... (00:00.149 / 00:22.175, 392Mb) Sushi: info Preprocessed 194 documents with 131 aliases. (00:00.938 / 00:23.114, 392Mb) Sushi: info Imported 109 definitions and 191 instances. (00:01.909 / 00:25.024, 392Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.154 / 00:25.178, 392Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.9.0 (00:00.634 / 00:25.813, 392Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.9.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.9.0 (00:00.001 / 00:25.814, 392Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.9.0 (00:00.913 / 00:26.728, 392Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.9.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.9.0 (00:00.003 / 00:26.731, 392Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.9.0 with 117 resources (00:00.086 / 00:26.818, 392Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.624 / 00:27.443, 392Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:27.443, 392Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:03.191 / 00:30.635, 392Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.002 / 00:30.637, 392Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.695 / 00:32.333, 392Mb) Sushi: info Loaded de.basisprofil.r4#1.5.4 with 168 resources (00:00.093 / 00:32.426, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0 with 42 resources (00:00.043 / 00:32.470, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4 with 15 resources (00:00.006 / 00:32.476, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.base#2026.0.0 with 37 resources (00:00.036 / 00:32.512, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0 with 16 resources (00:00.029 / 00:32.542, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0 with 173 resources (00:00.064 / 00:32.606, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4 with 33 resources (00:00.051 / 00:32.658, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0 with 284 resources (00:00.264 / 00:32.922, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0 with 30 resources (00:00.050 / 00:32.972, 392Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.studie#2026.0.1 with 46 resources (00:00.017 / 00:32.990, 392Mb) Sushi: info Loaded hl7.fhir.uv.genomics-reporting#3.0.0 with 93 resources (00:00.077 / 00:33.067, 392Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:33.068, 392Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.106 / 00:36.174, 392Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:36.176, 392Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.698 / 00:37.875, 392Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.615 / 00:38.490, 392Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:38.491, 392Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.398 / 00:39.889, 392Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:39.890, 392Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.373 / 00:40.264, 392Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.012 / 00:40.277, 392Mb) Sushi: info Converting FSH to FHIR resources... (00:00.024 / 00:40.302, 392Mb) Sushi: error Structure Definition https://www.medizininformatik-initiative.de/fhir/modul-studie/StructureDefinition/mii-pr-studie-studie is missing a snapshot. Snapshot is required for import. (00:06.444 / 00:46.746, 392Mb) Sushi: File: /scratch/repo/input/fsh/profiles/Beschluss-Therapieplan/mii-pr-mtb-studie.fsh (00:00.000 / 00:46.746, 392Mb) Sushi: Line: 2 - 26 (00:00.000 / 00:46.747, 392Mb) Sushi: info Converted 61 FHIR StructureDefinitions. (00:23.383 / 01:10.130, 392Mb) Sushi: info Converted 19 FHIR CodeSystems. (00:01.578 / 01:11.709, 392Mb) Sushi: info Converted 29 FHIR ValueSets. (00:02.769 / 01:14.478, 392Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-cldn6 (00:18.263 / 01:32.742, 392Mb) Sushi: File: /scratch/repo/input/fsh/examples/bundle/mii-exa-mtb-kim-musterperson-bundle.fsh (00:00.000 / 01:32.743, 392Mb) Sushi: Line: 8 - 169 (00:00.000 / 01:32.743, 392Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-cldn6 (00:01.279 / 01:34.023, 392Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:34.023, 392Mb) Sushi: Line: 19 - 71 (00:00.000 / 01:34.023, 392Mb) Sushi: error Structure Definition https://www.medizininformatik-initiative.de/fhir/modul-studie/StructureDefinition/mii-pr-studie-beteiligte-person is missing a snapshot. Snapshot is required for import. (00:00.440 / 01:34.463, 392Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:34.464, 392Mb) Sushi: Line: 159 - 164 (00:00.000 / 01:34.464, 392Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-tedova (00:00.412 / 01:34.876, 392Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:34.876, 392Mb) Sushi: Line: 315 - 323 (00:00.000 / 01:34.877, 392Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-ccne1 (00:00.083 / 01:34.960, 392Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:34.961, 392Mb) Sushi: Line: 338 - 344 (00:00.000 / 01:34.961, 392Mb) Sushi: info Converted 191 FHIR instances. (00:10.131 / 01:45.092, 392Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.006 / 01:45.098, 392Mb) Sushi: info Exported 294 FHIR resources as JSON. (00:00.922 / 01:46.020, 392Mb) Sushi: info Assembling Implementation Guide sources... (00:00.009 / 01:46.030, 392Mb) Sushi: info Generated ImplementationGuide-mii-kerndatensatzmodul-molekulares-tumorboard.json (00:00.060 / 01:46.090, 392Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:46.091, 392Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 01:46.092, 392Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:46.093, 392Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:46.093, 392Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:46.093, 392Mb) Sushi: | | 48 | 11 | 1 | 0 | | (00:00.000 / 01:46.093, 392Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:46.094, 392Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:46.094, 392Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:46.094, 392Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:46.094, 392Mb) Sushi: | | 29 | 19 | 186 | | (00:00.000 / 01:46.094, 392Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:46.094, 392Mb) Sushi: | | (00:00.000 / 01:46.094, 392Mb) Sushi: =================================================================== (00:00.000 / 01:46.095, 392Mb) Sushi: | Don't clam up, ask for help. 6 Errors 0 Warnings | (00:00.000 / 01:46.095, 392Mb) Sushi: =================================================================== (00:00.000 / 01:46.095, 397Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.032 / 01:46.128, 397Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 01:46.128, 397Mb) Exception: Process exited with an error: 6 (Exit value: 6) (00:00.000 / 01:46.128, 397Mb) Publishing Content Failed: Process exited with an error: 6 (Exit value: 6) (00:00.000 / 01:46.128, 397Mb) (00:00.000 / 01:46.128, 397Mb) Use -? to get command line help (00:00.000 / 01:46.128, 397Mb) (00:00.000 / 01:46.128, 397Mb) Stack Dump (for debugging): (00:00.000 / 01:46.128, 397Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 6 (Exit value: 6) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:143) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:222) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1594)