Profile: MII_PR_MTB_NGS_Bericht Parent: DiagnosticReport Id: mii-pr-mtb-ngs-bericht Title: "MII PR MTB NGS-Bericht" Description: "NGS-Bericht zu einer Probe" * insert PR_Header * issued MS * issued ^short = "Erstellungsdatum" * insert Translation(issued ^short, de-DE, Erstellungsdatum) * insert Translation(issued ^short, en, Issue date) * subject MS * subject only Reference(Patient) * subject ^short = "Referenz auf Patient" * insert Translation(subject ^short, de-DE, Referenz auf Patient) * insert Translation(subject ^short, en, Reference to Patient) * specimen MS * specimen only Reference(MII_PR_Onko_Specimen or MII_PR_Patho_Specimen or MII_PR_Biobank_Specimen_Bioprobe_Core or Specimen) * specimen ^short = "Referenz auf Probe" * insert Translation(specimen ^short, de-DE, Referenz auf Probe) * insert Translation(specimen ^short, en, Reference to Specimen) * result ^slicing.discriminator.type = #profile * result ^slicing.discriminator.path = "$this.resolve()" * result ^slicing.rules = #open * result ^slicing.description = "Slice für Varianten & Biomarker des NGS-Berichts" * result ^slicing.ordered = false * result contains TumorMutionalBurden 0..1 MS * result[TumorMutionalBurden] ^short = "Tumor Mutational Burden" * result[TumorMutionalBurden] ^definition = "Verweis auf Tumor Mutational Burden" * insert Translation(result[TumorMutionalBurden] ^short, de-DE, Tumormutationslast) * insert Translation(result[TumorMutionalBurden] ^definition, de-DE, Verweis auf Tumormutationslast) * insert Translation(result[TumorMutionalBurden] ^short, en, Tumor Mutational Burden) * insert Translation(result[TumorMutionalBurden] ^definition, en, Reference to Tumor Mutational Burden) * result[TumorMutionalBurden] 0..1 MS * result[TumorMutionalBurden] only Reference(MII_PR_MTB_Mutationslast) // or MII_PR_Molgen_Mutationslast or MII_PR_MTB_Mutationslast // Ich darf hier keine Referenz zu den MII_PR_Molgen_Mutationslast or MII_PR_MTB_Mutationslast Profilen machen // obwohl ihr Basisprofil Observation ist .... - JG-IBSM * result contains MSI 0..1 MS * result[MSI] ^short = "Micro-Satellite Instabilities" * result[MSI] ^definition = "Verweis auf Micro-Satellite Instabilities" * insert Translation(result[MSI] ^short, de-DE, Mikrosatelliteninstabilitaeten) * insert Translation(result[MSI] ^definition, de-DE, Verweis auf Mikrosatelliteninstabilitaeten) * insert Translation(result[MSI] ^short, en, Micro-Satellite Instabilities) * insert Translation(result[MSI] ^definition, en, Reference to Micro-Satellite Instabilities) * result[MSI] 0..1 MS * result[MSI] only Reference(MII_PR_MTB_Mikrosatelliteninstabilitaet) //MII_PR_MTB_Mikrosatelliteninstabilitaet or MII_PR_MolGen_Mikrosatelliteninstabilitaet // Problem s.o. * result contains Ploidie 0..1 MS * result[Ploidie] ^short = "Ploidie" * result[Ploidie] ^definition = "Ploidie" * insert Translation(result[Ploidie] ^short, de-DE, Ploidie) * insert Translation(result[Ploidie] ^definition, de-DE, Ploidie) * insert Translation(result[Ploidie] ^short, en, Ploidy) * insert Translation(result[Ploidie] ^definition, en, Ploidy) * result[Ploidie] 0..1 MS * result[Ploidie] only Reference(MII_PR_MTB_Ploidie) * result contains HRDScore 0..1 MS * result[HRDScore] ^short = "HRD-Score" * result[HRDScore] ^definition = "Verweis auf HRD-Score" * insert Translation(result[HRDScore] ^short, de-DE, HRD-Score) * insert Translation(result[HRDScore] ^definition, de-DE, Verweis auf HRD-Score) * insert Translation(result[HRDScore] ^short, en, HRD Score) * insert Translation(result[HRDScore] ^definition, en, Reference to HRD Score) * result[HRDScore] 0..1 MS * result[HRDScore] only Reference(MII_PR_MTB_HRD_Score) // or HRD-Profile * result contains BRCAness 0..1 MS * result[BRCAness] ^short = "BRCAness" * result[BRCAness] ^definition = "Verweis auf BRCAness" * insert Translation(result[BRCAness] ^short, de-DE, BRCAness) * insert Translation(result[BRCAness] ^definition, de-DE, Verweis auf BRCAness) * insert Translation(result[BRCAness] ^short, en, BRCAness) * insert Translation(result[BRCAness] ^definition, en, Reference to BRCAness) * result[BRCAness] 0..1 MS * result[BRCAness] only Reference(MII_PR_MTB_BRCAness) // or BRCAness-Profile * result contains EinfacheVariante 0..* MS * result[EinfacheVariante] ^short = "Einfache Variante" * result[EinfacheVariante] ^definition = "Verweis auf Einfache Variante" * insert Translation(result[EinfacheVariante] ^short, de-DE, Einfache Variante) * insert Translation(result[EinfacheVariante] ^definition, de-DE, Verweis auf Einfache Variante) * insert Translation(result[EinfacheVariante] ^short, en, Simple Variant) * insert Translation(result[EinfacheVariante] ^definition, en, Reference to Simple Variant) * result[EinfacheVariante] 0..1 MS * result[EinfacheVariante] only Reference(MII_PR_MTB_Einfache_Variante) // or Einfache Variante Profile * result contains CopyNumberVariant 0..* MS * result[CopyNumberVariant] ^short = "Copy Number Variant" * result[CopyNumberVariant] ^definition = "Verweis auf Copy Number Variant" * insert Translation(result[CopyNumberVariant] ^short, de-DE, Kopienzahlvariante) * insert Translation(result[CopyNumberVariant] ^definition, de-DE, Verweis auf Kopienzahlvariante) * insert Translation(result[CopyNumberVariant] ^short, en, Copy Number Variant) * insert Translation(result[CopyNumberVariant] ^definition, en, Reference to Copy Number Variant) * result[CopyNumberVariant] 0..1 MS * result[CopyNumberVariant] only Reference(MII_PR_MTB_Copy_Number_Variant) // or Copy Number Variant Profile * result contains DNAFusion 0..* MS * result[DNAFusion] ^short = "DNA-Fusion" * result[DNAFusion] ^definition = "Verweis auf DNA-Fusion" * insert Translation(result[DNAFusion] ^short, de-DE, DNA-Fusion) * insert Translation(result[DNAFusion] ^definition, de-DE, Verweis auf DNA-Fusion) * insert Translation(result[DNAFusion] ^short, en, DNA Fusion) * insert Translation(result[DNAFusion] ^definition, en, Reference to DNA Fusion) * result[DNAFusion] 0..1 MS * result[DNAFusion] only Reference(MII_PR_MTB_DNA_Fusion) // or MTB DNA-Fusion Profil * result contains RNAFusion 0..* MS * result[RNAFusion] ^short = "RNA-Fusion" * result[RNAFusion] ^definition = "Verweis auf RNA-Fusion" * insert Translation(result[RNAFusion] ^short, de-DE, RNA-Fusion) * insert Translation(result[RNAFusion] ^definition, de-DE, Verweis auf RNA-Fusion) * insert Translation(result[RNAFusion] ^short, en, RNA Fusion) * insert Translation(result[RNAFusion] ^definition, en, Reference to RNA Fusion) * result[RNAFusion] 0..1 MS * result[RNAFusion] only Reference(MII_PR_MTB_RNA_Fusion) // or MTB RNA-Fusion Profile * result contains RNASeq 0..* MS * result[RNASeq] ^short = "RNASeq" * result[RNASeq] ^definition = "Verweis auf RNASeq" * insert Translation(result[RNASeq] ^short, de-DE, RNASeq) * insert Translation(result[RNASeq] ^definition, de-DE, Verweis auf RNASeq) * insert Translation(result[RNASeq] ^short, en, RNASeq) * insert Translation(result[RNASeq] ^definition, en, Reference to RNASeq) * result[RNASeq] 0..1 MS * result[RNASeq] only Reference(MII_PR_MTB_RNA_Seq) // or MTB RNASeq Profile * result contains MolekularerBiomarkerHER2Status 0..* MS * result[MolekularerBiomarkerHER2Status] ^short = "Molekularer Biomarker HER2 Status" * result[MolekularerBiomarkerHER2Status] ^definition = "Verweis auf Molekularer Biomarker HER2 Status" * insert Translation(result[MolekularerBiomarkerHER2Status] ^short, de-DE, Molekularer Biomarker HER2 Status) * insert Translation(result[MolekularerBiomarkerHER2Status] ^definition, de-DE, Verweis auf Molekularer Biomarker HER2 Status) * insert Translation(result[MolekularerBiomarkerHER2Status] ^short, en, Molecular Biomarker HER2 Status) * insert Translation(result[MolekularerBiomarkerHER2Status] ^definition, en, Reference to Molecular Biomarker HER2 Status) * result[MolekularerBiomarkerHER2Status] 0..* MS * result[MolekularerBiomarkerHER2Status] only Reference( MII_PR_MTB_BIOMARKER_HER2_STATUS) // für andere Biomarker * result contains MolekularerBiomarker 0..* MS * result[MolekularerBiomarker] ^short = "Molekularer Biomarker" * result[MolekularerBiomarker] ^definition = "Verweis auf Molekularer Biomarker" * insert Translation(result[MolekularerBiomarker] ^short, de-DE, Molekularer Biomarker) * insert Translation(result[MolekularerBiomarker] ^definition, de-DE, Verweis auf Molekularer Biomarker) * insert Translation(result[MolekularerBiomarker] ^short, en, Molecular Biomarker) * insert Translation(result[MolekularerBiomarker] ^definition, en, Reference to Molecular Biomarker) * result[MolekularerBiomarker] 0..* MS * result[MolekularerBiomarker] only Reference( MII_PR_MTB_Molekularer_Biomarker) * result contains Tumorzellgehalt 0..1 MS Extension: MII_EX_MTB_NGS_Bericht_Genomic_Study Id: mii-ex-mtb-ngs-bericht-genomic-study Context: DiagnosticReport Title: "MII EX MTB NGS Bericht Metadaten" Description: "Metadaten des NGS-Berichts" * insert EX_Header($mii-ex-mtb-ngs-bericht-genomic-study) * value[x] only Reference * value[x] 1..1 MS * valueReference ^short = "Metadaten des NGS-Berichts" * valueReference ^definition = "Genomic-Study mit Metadaten als Genomic-Study-Analysis des NGS-Berichts" * insert Translation(valueReference ^short, de-DE, Metadaten des NGS-Berichts) * insert Translation(valueReference ^definition, de-DE, Genomic-Study mit Metadaten als Genomic-Study-Analysis des NGS-Berichts) * insert Translation(valueReference ^short, en, Metadata of the NGS report) * insert Translation(valueReference ^definition, en, Genomic Study with metadata as Genomic Study Analysis of the NGS report) * valueReference only Reference(MII_PR_MTB_Genomic_Study)