INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard --branch release-2026-validation-fixing repo DEBUG:root:Time to deadline 35879.998192 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35877.073553 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35875.803784 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard/ -out /scratch/repo DEBUG:root:Time to deadline 35869.303897 seconds FHIR IG Publisher Version 2.0.29 (Git# 826a7eb003d6). Built 2025-12-17T01:19:30.102Z (13 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medizininformatik-initiative/kerndatensatzmodul-molekulares-tumorboard/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, December 30, 2025, 5:51:09 PM Coordinated Universal Time (2025-12-30T17:51:09Z) Build FHIR IG from /scratch/repo (00:00.026 / 00:00.026, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.029, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.032, 97Mb) Found dependency on de.basisprofil.r4#1.5.4 in Sushi config. Pre-installing (00:00.009 / 00:00.041, 97Mb) Installing de.basisprofil.r4#1.5.4 to the package cache  Fetching:  Installing de.basisprofil.r4#1.5.4  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0 in Sushi config. Pre-installing (00:03.735 / 00:03.777, 104Mb) Installing de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4 in Sushi config. Pre-installing (00:01.005 / 00:04.782, 112Mb) Installing de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.base#2026.0.0 in Sushi config. Pre-installing (00:00.335 / 00:05.117, 120Mb) Installing de.medizininformatikinitiative.kerndatensatz.base#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.base#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0 in Sushi config. Pre-installing (00:00.959 / 00:06.077, 136Mb) Installing de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0 in Sushi config. Pre-installing (00:00.764 / 00:06.841, 144Mb) Installing de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4 in Sushi config. Pre-installing (00:01.841 / 00:08.683, 184Mb) Installing de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-rc.10 in Sushi config. Pre-installing (00:01.630 / 00:10.314, 208Mb) Installing de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-rc.10 to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-rc.10  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot in Sushi config. Pre-installing (00:05.097 / 00:15.411, 312Mb) Installing de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot  done. Found dependency on de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot in Sushi config. Pre-installing (00:01.001 / 00:16.412, 328Mb) Installing de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot to the package cache  Fetching:  Installing de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot  done. Found dependency on hl7.fhir.uv.genomics-reporting#3.0.0 in Sushi config. Pre-installing (00:00.680 / 00:17.092, 328Mb) Installing hl7.fhir.uv.genomics-reporting#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.genomics-reporting#3.0.0  done. Run Sushi on /scratch/repo (00:03.245 / 00:20.338, 376Mb) Sushi: info Running SUSHI v3.17.0 (implements FHIR Shorthand specification v3.0.0) (00:00.684 / 00:21.022, 376Mb) Sushi: info Arguments: (00:00.000 / 00:21.023, 376Mb) Sushi: info --require-latest (00:00.000 / 00:21.023, 376Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:21.023, 376Mb) Sushi: info /scratch/repo (00:00.000 / 00:21.024, 376Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.672 / 00:21.696, 376Mb) Sushi: info Importing FSH text... (00:00.140 / 00:21.837, 376Mb) Sushi: info Preprocessed 194 documents with 124 aliases. (00:00.897 / 00:22.735, 376Mb) Sushi: info Imported 109 definitions and 191 instances. (00:01.851 / 00:24.587, 376Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.176 / 00:24.763, 376Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.9.0 (00:00.682 / 00:25.446, 376Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.9.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.9.0 (00:00.002 / 00:25.448, 376Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.9.0 (00:00.869 / 00:26.318, 376Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.9.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.9.0 (00:00.002 / 00:26.321, 376Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.9.0 with 117 resources (00:00.089 / 00:26.410, 376Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.477 / 00:26.888, 376Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:26.889, 376Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:03.042 / 00:29.931, 376Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.001 / 00:29.932, 376Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.746 / 00:31.678, 376Mb) Sushi: info Loaded de.basisprofil.r4#1.5.4 with 168 resources (00:00.088 / 00:31.767, 376Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.biobank#2026.0.0 with 42 resources (00:00.042 / 00:31.809, 376Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.consent#2025.0.4 with 15 resources (00:00.007 / 00:31.816, 376Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.base#2026.0.0 with 37 resources (00:00.035 / 00:31.851, 376Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.medikation#2026.0.0 with 16 resources (00:00.027 / 00:31.879, 376Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.meta#2026.0.0 with 173 resources (00:00.055 / 00:31.934, 381Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.molgen#2026.0.4 with 33 resources (00:00.049 / 00:31.984, 381Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.onkologie#2026.0.0-rc.10 with 284 resources (00:00.246 / 00:32.231, 381Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.patho#2026.0.0-ballot with 30 resources (00:00.045 / 00:32.276, 381Mb) Sushi: info Loaded de.medizininformatikinitiative.kerndatensatz.studie#2026.0.0-ballot with 42 resources (00:00.015 / 00:32.291, 381Mb) Sushi: info Loaded hl7.fhir.uv.genomics-reporting#3.0.0 with 93 resources (00:00.067 / 00:32.358, 381Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:32.359, 381Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.400 / 00:35.760, 381Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:35.761, 381Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.697 / 00:37.458, 381Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.589 / 00:38.048, 381Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:38.048, 381Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.572 / 00:39.621, 381Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.002 / 00:39.624, 381Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.331 / 00:39.955, 381Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.014 / 00:39.970, 381Mb) Sushi: info Converting FSH to FHIR resources... (00:00.023 / 00:39.993, 381Mb) Sushi: error Structure Definition https://www.medizininformatik-initiative.de/fhir/modul-studie/StructureDefinition/mii-pr-studie-studie is missing a snapshot. Snapshot is required for import. (00:05.742 / 00:45.736, 381Mb) Sushi: File: /scratch/repo/input/fsh/profiles/Beschluss-Therapieplan/mii-pr-mtb-studie.fsh (00:00.000 / 00:45.736, 381Mb) Sushi: Line: 2 - 26 (00:00.000 / 00:45.736, 381Mb) Sushi: info Converted 61 FHIR StructureDefinitions. (00:21.434 / 01:07.171, 381Mb) Sushi: info Converted 19 FHIR CodeSystems. (00:01.548 / 01:08.719, 381Mb) Sushi: info Converted 29 FHIR ValueSets. (00:02.116 / 01:10.836, 381Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-cldn6 (00:16.879 / 01:27.716, 381Mb) Sushi: File: /scratch/repo/input/fsh/examples/bundle/mii-exa-mtb-kim-musterperson-bundle.fsh (00:00.000 / 01:27.716, 381Mb) Sushi: Line: 8 - 169 (00:00.000 / 01:27.716, 381Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-cldn6 (00:01.225 / 01:28.942, 381Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:28.943, 381Mb) Sushi: Line: 19 - 71 (00:00.000 / 01:28.943, 381Mb) Sushi: error Structure Definition https://www.medizininformatik-initiative.de/fhir/modul-studie/StructureDefinition/mii-pr-studie-beteiligte-person is missing a snapshot. Snapshot is required for import. (00:00.435 / 01:29.378, 381Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:29.378, 381Mb) Sushi: Line: 159 - 164 (00:00.000 / 01:29.379, 381Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-tedova (00:00.412 / 01:29.791, 381Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:29.791, 381Mb) Sushi: Line: 315 - 323 (00:00.000 / 01:29.791, 381Mb) Sushi: error InstanceOf MII_PR_MTB_Studie not found for mii-exa-mtb-study-ccne1 (00:00.076 / 01:29.868, 381Mb) Sushi: File: /scratch/repo/input/fsh/examples/mii-exa-mtb-kim-musterperson-studienempfehlungen.fsh (00:00.000 / 01:29.868, 381Mb) Sushi: Line: 338 - 344 (00:00.000 / 01:29.868, 381Mb) Sushi: info Converted 191 FHIR instances. (00:08.627 / 01:38.496, 381Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.005 / 01:38.502, 381Mb) Sushi: info Exported 294 FHIR resources as JSON. (00:00.909 / 01:39.411, 381Mb) Sushi: info Assembling Implementation Guide sources... (00:00.009 / 01:39.420, 381Mb) Sushi: info Generated ImplementationGuide-mii-kerndatensatzmodul-molekulares-tumorboard.json (00:00.061 / 01:39.482, 381Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:39.482, 381Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 01:39.484, 381Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:39.485, 381Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:39.485, 381Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:39.485, 381Mb) Sushi: | | 48 | 11 | 1 | 0 | | (00:00.000 / 01:39.485, 381Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:39.485, 381Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:39.486, 381Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:39.486, 381Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:39.486, 381Mb) Sushi: | | 29 | 19 | 186 | | (00:00.000 / 01:39.486, 381Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:39.486, 381Mb) Sushi: | | (00:00.000 / 01:39.486, 381Mb) Sushi: =================================================================== (00:00.000 / 01:39.486, 381Mb) Sushi: | Call a FSH sturgeon! 6 Errors 0 Warnings | (00:00.000 / 01:39.487, 381Mb) Sushi: =================================================================== (00:00.000 / 01:39.487, 381Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.038 / 01:39.526, 381Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 01:39.526, 381Mb) Exception: Process exited with an error: 6 (Exit value: 6) (00:00.000 / 01:39.526, 381Mb) Publishing Content Failed: Process exited with an error: 6 (Exit value: 6) (00:00.000 / 01:39.526, 381Mb) (00:00.000 / 01:39.526, 381Mb) Use -? to get command line help (00:00.000 / 01:39.526, 381Mb) (00:00.000 / 01:39.527, 381Mb) Stack Dump (for debugging): (00:00.000 / 01:39.527, 381Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 6 (Exit value: 6) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:143) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:222) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1594)