INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/medcomdk/dk-medcom-conditionlist --branch v.1.0.4-githubpages repo DEBUG:root:Time to deadline 35879.998091 seconds Cloning into 'repo'... Note: switching to '227c113c6d5beeb863ad4980c1eeead5527a2728'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.429293 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.159422 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.8.0 npm notice Changelog: npm notice Run `npm install -g npm@11.8.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medcomdk/dk-medcom-conditionlist/ -out /scratch/repo DEBUG:root:Time to deadline 35871.105907 seconds FHIR IG Publisher Version 2.0.30 (Git# 04ebe87f19c1). Built 2026-01-20T18:29:40.591Z (5 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/medcomdk/dk-medcom-conditionlist/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, January 26, 2026, 6:14:27 AM Coordinated Universal Time (2026-01-26T06:14:27Z) Build FHIR IG from /scratch/repo (00:00.024 / 00:00.025, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.032, 97Mb) Found dependency on medcom.fhir.dk.core#2.3.0 in Sushi config. Pre-installing (00:00.011 / 00:00.043, 97Mb) Installing medcom.fhir.dk.core#2.3.0 to the package cache  Fetching:  Installing medcom.fhir.dk.core#2.3.0  done. Found dependency on medcom.fhir.dk.document#dev in Sushi config. Pre-installing (00:01.694 / 00:01.738, 56Mb) Unable to check package currency: medcom.fhir.dk.document: medcom.fhir.dk.document Installing medcom.fhir.dk.document#current to the package cache  Fetching:  Installing medcom.fhir.dk.document#current  done. Found dependency on hl7.fhir.dk.core#3.1.0 in Sushi config. Pre-installing (00:00.989 / 00:02.727, 112Mb) Installing hl7.fhir.dk.core#3.1.0 to the package cache  Fetching:  Installing hl7.fhir.dk.core#3.1.0  done. Run Sushi on /scratch/repo (00:01.298 / 00:04.026, 128Mb) Sushi: info Running SUSHI v3.17.0 (implements FHIR Shorthand specification v3.0.0) (00:00.719 / 00:04.746, 136Mb) Sushi: info Arguments: (00:00.000 / 00:04.746, 136Mb) Sushi: info --require-latest (00:00.000 / 00:04.747, 136Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:04.747, 136Mb) Sushi: info /scratch/repo (00:00.000 / 00:04.747, 136Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.771 / 00:05.519, 136Mb) Sushi: info Importing FSH text... (00:00.153 / 00:05.672, 136Mb) Sushi: info Preprocessed 7 documents with 30 aliases. (00:00.175 / 00:05.848, 136Mb) Sushi: info Imported 3 definitions and 8 instances. (00:00.011 / 00:05.859, 136Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.169 / 00:06.028, 136Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.9.0 (00:00.612 / 00:06.641, 136Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.9.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.9.0 (00:00.000 / 00:06.642, 136Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.9.0 (00:00.886 / 00:07.528, 136Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.9.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.9.0 (00:00.002 / 00:07.531, 136Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.9.0 with 117 resources (00:00.084 / 00:07.615, 136Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.466 / 00:08.082, 136Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:08.082, 136Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:03.039 / 00:11.122, 144Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.001 / 00:11.123, 144Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.729 / 00:12.853, 144Mb) Sushi: info Loaded medcom.fhir.dk.core#2.3.0 with 19 resources (00:00.018 / 00:12.872, 144Mb) Sushi: info Falling back to medcom.fhir.dk.document#current since medcom.fhir.dk.document#dev is not locally cached. To avoid this, add medcom.fhir.dk.document#dev to your local FHIR cache by building it locally with the HL7 FHIR IG Publisher. (00:00.000 / 00:12.872, 144Mb) Sushi: info Loaded medcom.fhir.dk.document#current with 25 resources (00:00.093 / 00:12.966, 144Mb) Sushi: info Loaded hl7.fhir.dk.core#3.1.0 with 48 resources (00:00.031 / 00:12.997, 144Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:12.997, 144Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.472 / 00:16.470, 144Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:16.472, 144Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.610 / 00:18.082, 144Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.567 / 00:18.650, 144Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:18.651, 144Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.553 / 00:20.204, 144Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:20.205, 144Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.340 / 00:20.546, 144Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.014 / 00:20.561, 144Mb) Sushi: info Converting FSH to FHIR resources... (00:00.030 / 00:20.591, 144Mb) Sushi: info Converted 3 FHIR StructureDefinitions. (00:00.433 / 00:21.025, 144Mb) Sushi: error Element Composition.language has minimum cardinality 1 but occurs 0 time(s). (00:00.105 / 00:21.130, 144Mb) Sushi: File: /scratch/repo/input/fsh/Composition.fsh (00:00.000 / 00:21.131, 144Mb) Sushi: Line: 12 - 43 (00:00.000 / 00:21.131, 144Mb) Sushi: error Element Composition.text has minimum cardinality 1 but occurs 0 time(s). (00:00.000 / 00:21.132, 144Mb) Sushi: File: /scratch/repo/input/fsh/Composition.fsh (00:00.000 / 00:21.132, 144Mb) Sushi: Line: 12 - 43 (00:00.000 / 00:21.132, 144Mb) Sushi: error Element Composition.identifier has minimum cardinality 1 but occurs 0 time(s). (00:00.007 / 00:21.140, 144Mb) Sushi: File: /scratch/repo/input/fsh/Composition.fsh (00:00.000 / 00:21.140, 144Mb) Sushi: Line: 12 - 43 (00:00.000 / 00:21.140, 144Mb) Sushi: error Element Composition.confidentiality has minimum cardinality 1 but occurs 0 time(s). (00:00.020 / 00:21.161, 144Mb) Sushi: File: /scratch/repo/input/fsh/Composition.fsh (00:00.000 / 00:21.161, 144Mb) Sushi: Line: 12 - 43 (00:00.000 / 00:21.161, 144Mb) Sushi: error Element Composition.event has minimum cardinality 1 but occurs 0 time(s). (00:00.003 / 00:21.165, 144Mb) Sushi: File: /scratch/repo/input/fsh/Composition.fsh (00:00.000 / 00:21.165, 144Mb) Sushi: Line: 12 - 43 (00:00.000 / 00:21.165, 144Mb) Sushi: error InstanceOf MedComDocumentReference not found for 94e65db8-2f0c-4a2c-a7c9-06a160d59a12 (00:00.128 / 00:21.294, 144Mb) Sushi: File: /scratch/repo/input/fsh/DocumentReferenct.fsh (00:00.000 / 00:21.294, 144Mb) Sushi: Line: 2 - 30 (00:00.000 / 00:21.295, 144Mb) Sushi: error InstanceOf MedComDocumentAuthorPerson not found for 1fcad31f-8967-4f49-b6af-7e64082e8fec (00:00.136 / 00:21.431, 144Mb) Sushi: File: /scratch/repo/input/fsh/instances.fsh (00:00.000 / 00:21.431, 144Mb) Sushi: Line: 1 - 9 (00:00.000 / 00:21.432, 144Mb) Sushi: error InstanceOf MedComDocumentSourcePatient not found for 69e475df-20c8-4f54-8cea-9843568205fd (00:00.001 / 00:21.433, 144Mb) Sushi: File: /scratch/repo/input/fsh/instances.fsh (00:00.000 / 00:21.433, 144Mb) Sushi: Line: 11 - 22 (00:00.000 / 00:21.433, 144Mb) Sushi: error InstanceOf MedComDocumentAuthorOrganization not found for 97d47a38-5189-4012-a3c6-cc57e102f9f5 (00:00.000 / 00:21.434, 144Mb) Sushi: File: /scratch/repo/input/fsh/instances.fsh (00:00.000 / 00:21.434, 144Mb) Sushi: Line: 24 - 30 (00:00.000 / 00:21.434, 144Mb) Sushi: info Converted 8 FHIR instances. (00:00.000 / 00:21.435, 144Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:21.436, 144Mb) Sushi: info Exported 7 FHIR resources as JSON. (00:00.043 / 00:21.479, 144Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:21.481, 144Mb) Sushi: info Generated ImplementationGuide-medcom.fhir.dk.shareddiagnoses.json (00:00.046 / 00:21.528, 144Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:21.528, 144Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:21.530, 144Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.530, 144Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:21.530, 144Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:21.531, 144Mb) Sushi: | | 3 | 0 | 0 | 0 | | (00:00.000 / 00:21.531, 144Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.531, 144Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.531, 144Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:21.531, 144Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:21.531, 144Mb) Sushi: | | 0 | 0 | 4 | | (00:00.000 / 00:21.532, 144Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.532, 144Mb) Sushi: | | (00:00.000 / 00:21.532, 144Mb) Sushi: =================================================================== (00:00.000 / 00:21.532, 144Mb) Sushi: | Having a sinking feeling? 9 Errors 0 Warnings | (00:00.000 / 00:21.532, 144Mb) Sushi: =================================================================== (00:00.000 / 00:21.532, 144Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.019 / 00:21.552, 144Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:21.552, 144Mb) Exception: Process exited with an error: 9 (Exit value: 9) (00:00.000 / 00:21.552, 144Mb) Publishing Content Failed: Process exited with an error: 9 (Exit value: 9) (00:00.000 / 00:21.552, 144Mb) (00:00.000 / 00:21.553, 144Mb) Use -? to get command line help (00:00.000 / 00:21.553, 144Mb) (00:00.000 / 00:21.553, 144Mb) Stack Dump (for debugging): (00:00.000 / 00:21.553, 144Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 9 (Exit value: 9) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:143) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:222) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1594)