INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/jembi/Starter-FHIR-IG --branch master repo DEBUG:root:Time to deadline 35879.998207 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.481222 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.011055 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 8s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.2 npm notice Changelog: npm notice Run `npm install -g npm@11.5.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/jembi/Starter-FHIR-IG/ -out /scratch/repo DEBUG:root:Time to deadline 35869.611676 seconds FHIR IG Publisher Version 2.0.16 (Git# b88a2ed37ef7). Built 2025-08-27T17:19:52.105Z (26 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/jembi/Starter-FHIR-IG/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, August 28, 2025, 8:07:27 PM Coordinated Universal Time (2025-08-28T20:07:27Z) Build FHIR IG from /scratch/repo (00:00.025 / 00:00.026, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.031, 97Mb) Found dependency on hl7.fhir.uv.cql#1.0.0 in Sushi config. Pre-installing (00:00.005 / 00:00.036, 97Mb) Installing hl7.fhir.uv.cql#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cql#1.0.0  done. Found dependency on hl7.fhir.uv.crmi#1.0.0 in Sushi config. Pre-installing (00:01.588 / 00:01.625, 56Mb) Installing hl7.fhir.uv.crmi#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.crmi#1.0.0  done. Found dependency on hl7.fhir.us.cqfmeasures#5.0.0 in Sushi config. Pre-installing (00:00.982 / 00:02.608, 72Mb) Installing hl7.fhir.us.cqfmeasures#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.cqfmeasures#5.0.0  done. Found dependency on fhir.cqf.common#4.0.1 in Sushi config. Pre-installing (00:00.857 / 00:03.465, 88Mb) Installing fhir.cqf.common#4.0.1 to the package cache  Fetching:  Installing fhir.cqf.common#4.0.1  done. Run Sushi on /scratch/repo (00:00.454 / 00:03.920, 88Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.703 / 00:04.624, 97Mb) Sushi: info Arguments: (00:00.000 / 00:04.624, 97Mb) Sushi: info --require-latest (00:00.000 / 00:04.625, 97Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:04.625, 97Mb) Sushi: info /scratch/repo (00:00.000 / 00:04.625, 97Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.778 / 00:05.403, 97Mb) Sushi: info Importing FSH text... (00:00.153 / 00:05.556, 97Mb) Sushi: info Preprocessed 20 documents with 23 aliases. (00:00.423 / 00:05.980, 97Mb) Sushi: info Imported 36 definitions and 45 instances. (00:00.130 / 00:06.111, 104Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.180 / 00:06.291, 104Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.650 / 00:06.942, 104Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:06.943, 104Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.795 / 00:07.738, 104Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:07.741, 104Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.084 / 00:07.825, 104Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.448 / 00:08.274, 104Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:08.274, 104Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.494 / 00:10.769, 104Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:10.770, 104Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.753 / 00:12.523, 104Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.459 / 00:12.982, 104Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:12.983, 104Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.358 / 00:14.342, 104Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:14.343, 104Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.330 / 00:14.673, 104Mb) Sushi: info Loaded hl7.fhir.uv.cql#1.0.0 with 15 resources (00:00.017 / 00:14.691, 104Mb) Sushi: info Loaded hl7.fhir.uv.crmi#1.0.0 with 79 resources (00:00.077 / 00:14.768, 104Mb) Sushi: info Loaded hl7.fhir.us.cqfmeasures#5.0.0 with 88 resources (00:00.084 / 00:14.853, 104Mb) Sushi: info Loaded fhir.cqf.common#4.0.1 with 9 resources (00:00.018 / 00:14.871, 104Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:14.872, 104Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.829 / 00:17.701, 104Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:17.703, 104Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.682 / 00:19.385, 104Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.012 / 00:19.397, 104Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:19.398, 104Mb) Sushi: info Found 5 non-JSON / non-XML file(s) in directory: /scratch/repo/input/maps. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:19.398, 104Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:19.398, 104Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:19.398, 104Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:19.399, 104Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:19.399, 104Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:19.399, 104Mb) Sushi: info Converting FSH to FHIR resources... (00:00.023 / 00:19.423, 104Mb) Sushi: info Converted 26 FHIR StructureDefinitions. (00:02.415 / 00:21.839, 104Mb) Sushi: info Converted 3 FHIR CodeSystems. (00:00.080 / 00:21.919, 104Mb) Sushi: info Converted 7 FHIR ValueSets. (00:00.238 / 00:22.158, 104Mb) Sushi: info Converted 45 FHIR instances. (00:04.716 / 00:26.874, 104Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.004 / 00:26.879, 104Mb) Sushi: info Exported 81 FHIR resources as JSON. (00:00.111 / 00:26.991, 104Mb) Sushi: info Assembling Implementation Guide sources... (00:00.004 / 00:26.996, 104Mb) Sushi: info Generated ImplementationGuide-jembi.starter.ig.json (00:00.051 / 00:27.047, 104Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:27.047, 104Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:27.049, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:27.049, 104Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:27.050, 104Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:27.050, 104Mb) Sushi: | | 19 | 5 | 2 | 0 | | (00:00.000 / 00:27.050, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:27.050, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:27.050, 104Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:27.051, 104Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:27.051, 104Mb) Sushi: | | 7 | 3 | 45 | | (00:00.000 / 00:27.051, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:27.051, 104Mb) Sushi: | | (00:00.000 / 00:27.051, 104Mb) Sushi: =================================================================== (00:00.000 / 00:27.052, 104Mb) Sushi: | You're in the swim of things now! 0 Errors 0 Warnings | (00:00.000 / 00:27.052, 104Mb) Sushi: =================================================================== (00:00.000 / 00:27.052, 104Mb) Root directory: /scratch/repo (00:00.022 / 00:27.074, 104Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.731 / 00:27.806, 56Mb) Load Template from local-template (00:00.679 / 00:28.485, 65Mb) Load Template from fhir.base.template#current (00:00.034 / 00:28.520, 65Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.859 / 00:33.380, 401Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:33.380, 401Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-13372053443530115455.html Connect to Terminology Server at http://tx.fhir.org (00:25.112 / 00:58.492, 880Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology#5.5.0 to the package cache  Fetching:  Installing hl7.terminology#5.5.0  done. Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Load Package hl7.terminology#5.5.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.uv.cql#1.0.0 Load Package hl7.fhir.uv.crmi#1.0.0 Installing hl7.terminology.r4#6.0.2 to the package cache  Fetching:  Installing hl7.terminology.r4#6.0.2  done. Load Package hl7.terminology.r4#6.0.2 Load Package hl7.fhir.us.cqfmeasures#5.0.0 Installing hl7.fhir.uv.cpg#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cpg#1.0.0  done. Load Package hl7.fhir.uv.cpg#1.0.0 Load Package fhir.cqf.common#4.0.1 Installing hl7.fhir.uv.tools.r4#0.7.1 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.7.1  done. Load Package hl7.fhir.uv.tools.r4#0.7.1 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:29.244 / 01:27.736, 928Mb) Load IG (00:00.000 / 01:27.737, 928Mb) Load Content (00:00.001 / 01:27.738, 928Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.159 / 01:27.898, 936Mb) Translating CQL source (00:00.037 / 01:27.936, 944Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 01:27.936, 944Mb) Skipped loading namespace infor for uri http://terminology.hl7.org because it is already registered (00:00.054 / 01:27.990, 944Mb) Skipped loading namespace info for name hl7.fhir.uv.extensions.r4 because it is already registered (00:00.000 / 01:27.990, 944Mb) Skipped loading namespace info for name hl7.fhir.uv.extensions.r4 because it is already registered (00:00.000 / 01:27.990, 944Mb) Skipped loading namespace info for name hl7.terminology.r4 because it is already registered (00:00.000 / 01:27.990, 944Mb) Translating CQL source in file /scratch/repo/input/cql/LocalCommon.cql (00:00.000 / 01:27.991, 944Mb) CQL translation completed successfully. (00:03.451 / 01:31.443, 777Mb) Translating CQL source in file /scratch/repo/input/cql/ViralLoadStatus.cql (00:00.000 / 01:31.443, 777Mb) CQL translation completed successfully. (00:00.815 / 01:32.259, 905Mb) Translating CQL source in file /scratch/repo/input/cql/InitiatedART.cql (00:00.000 / 01:32.259, 905Mb) CQL translation completed successfully. (00:00.017 / 01:32.276, 905Mb) Translating CQL source in file /scratch/repo/input/cql/ViralLoad.cql (00:00.000 / 01:32.277, 905Mb) CQL translation completed successfully. (00:00.295 / 01:32.572, 961Mb) Translating CQL source in file /scratch/repo/input/cql/OutpatientViralLoad.cql (00:00.000 / 01:32.572, 961Mb) CQL translation completed successfully. (00:00.291 / 01:32.864, 1017Mb) Translating CQL source in file /scratch/repo/input/cql/HIVCommon.cql (00:00.000 / 01:32.864, 1017Mb) CQL translation completed successfully. (00:00.316 / 01:33.181, 1Gb) org.hl7.fhir.r5.fhirpath.FHIRLexer$FHIRLexerException: Error @36, 6: Map Input cannot be empty at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:140) at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:136) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:73) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:59) at org.hl7.fhir.igtools.publisher.SimpleFetcher.scan(SimpleFetcher.java:413) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResources(PublisherIGLoader.java:2849) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:1983) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:354) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481) Error loading /scratch/repo/input/maps/fhirr4-patient-cht-patient.fml: Error @36, 6: Map Input cannot be empty (00:01.706 / 01:34.887, 1Gb) org.hl7.fhir.r5.fhirpath.FHIRLexer$FHIRLexerException: Error @43, 6: Map Input cannot be empty at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:140) at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:136) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:73) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:59) at org.hl7.fhir.igtools.publisher.SimpleFetcher.scan(SimpleFetcher.java:413) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResources(PublisherIGLoader.java:2849) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:1983) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:354) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481) Error loading /scratch/repo/input/maps/cht-patient-to-fhirr4-patient.fml: Error @43, 6: Map Input cannot be empty (00:00.000 / 01:34.887, 1Gb) Process Loaded Resources (00:01.074 / 01:35.962, 1Gb) Generating Snapshots (00:01.057 / 01:37.020, 1Gb) Process Additional Loaded Resources (00:02.533 / 01:39.553, 1Gb) Generating Snapshots (00:00.000 / 01:39.554, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://jembi.org/fhir/package-list.json for version check (00:00.056 / 01:39.610, 1Gb) Processing Conformance Resources (00:00.712 / 01:40.322, 1Gb) Checking Language (00:00.000 / 01:40.323, 1Gb) Load Dependency Info (00:00.002 / 01:40.325, 1Gb) Load Info (00:00.001 / 01:40.327, 1Gb) Load Paths (00:00.000 / 01:40.327, 1Gb) Check R4 / R4B (00:00.000 / 01:40.328, 1Gb) Assign Comparison Ids (00:00.041 / 01:40.370, 1Gb) Propagating status (00:00.000 / 01:40.370, 1Gb) Generating Narratives (00:00.000 / 01:40.370, 1Gb) Validating Conformance Resources (00:05.861 / 01:46.232, 1Gb) Check profiles & code systems (00:26.831 / 02:13.063, 1Gb) Check realm rules (00:00.004 / 02:13.068, 1Gb) Previous Version Comparison (00:00.000 / 02:13.068, 1Gb) Checking for Bundles to sign (00:00.041 / 02:13.109, 1Gb) Validating Resources (00:00.000 / 02:13.109, 1Gb) Processing Provenance Records (00:02.558 / 02:15.668, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 02:15.668, 1Gb) Generate Native Outputs (00:00.217 / 02:15.885, 2Gb) Run Template (00:08.649 / 02:24.535, 1Gb) Generate HTML Outputs (00:01.282 / 02:25.818, 1Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-PatientLogicalModel::StructureDefinition/PatientLogicalModel: Error generating table for profile http://jembi.org/fhir/StructureDefinition/PatientLogicalModel: Title cells must have text (00:03.851 / 02:29.669, 1Gb) org.hl7.fhir.exceptions.FHIRException: Error generating table for profile http://jembi.org/fhir/StructureDefinition/PatientLogicalModel: Title cells must have text at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:597) at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1258) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1794) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4826) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4799) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:665) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:626) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:390) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481) Caused by: org.hl7.fhir.exceptions.FHIRException: Title cells must have text at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1455) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1340) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.checkModel(HierarchicalTableGenerator.java:1324) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.generate(HierarchicalTableGenerator.java:932) at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:595) ... 10 more org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:597) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1258) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1794) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4826) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4799) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:665) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:626) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:390) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) (00:00.000 / 02:29.670, 1Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481) (00:00.000 / 02:29.670, 1Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-RelatedPersonLogicalModel::StructureDefinition/RelatedPersonLogicalModel: Error generating table for profile http://jembi.org/fhir/StructureDefinition/RelatedPersonLogicalModel: Title cells must have text (00:00.239 / 02:29.910, 1Gb) org.hl7.fhir.exceptions.FHIRException: Error generating table for profile http://jembi.org/fhir/StructureDefinition/RelatedPersonLogicalModel: Title cells must have text at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:597) at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1258) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1794) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4826) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4799) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:665) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:626) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:390) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481) Caused by: org.hl7.fhir.exceptions.FHIRException: Title cells must have text at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1455) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1340) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.checkModel(HierarchicalTableGenerator.java:1324) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.generate(HierarchicalTableGenerator.java:932) at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:595) ... 10 more org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:597) (00:00.000 / 02:29.910, 1Gb) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1258) (00:00.000 / 02:29.910, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1794) (00:00.000 / 02:29.910, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4826) (00:00.000 / 02:29.910, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4799) (00:00.000 / 02:29.911, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:665) (00:00.000 / 02:29.911, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:626) (00:00.000 / 02:29.911, 1Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) (00:00.000 / 02:29.911, 1Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:390) (00:00.000 / 02:29.911, 1Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) (00:00.000 / 02:29.911, 1Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481) (00:00.000 / 02:29.911, 1Gb) Generate Spreadsheets (00:14.400 / 02:44.312, 1Gb) Generate Summaries (00:06.224 / 02:50.536, 1Gb) Generating Summary Outputs (00:00.000 / 02:50.536, 1Gb) DB Cumulative Time invested: 00:00:01.38 Sending Usage Stats to Server (00:20.606 / 03:11.142, 1Gb) ## Memory (MB): Use = 1267, Free = 17740, Total = 19008, Max = 19008 (00:00.011 / 03:11.153, 1Gb) Reclaiming memory... (00:00.000 / 03:11.154, 1Gb) ## Memory (MB): Use = 1209, Free = 17798, Total = 19008, Max = 19008 (00:01.423 / 03:12.577, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 03:12.579, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 03:12.579, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 03:12.579, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 03:12.579, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.545 / 03:13.125, 1Gb) Jekyll: Generating... (00:00.000 / 03:13.125, 1Gb) Jekyll has failed. Complete output from running Jekyll:  Liquid Exception: Could not locate the included file 'StructureDefinition-PatientLogicalModel-maps.xhtml' in any of ["/scratch/repo/temp/pages/_includes"]. Ensure it exists in one of those directories and, if it is a symlink, does not point outside (00:01.282 / 03:14.408, 1Gb) Note: Check that Jekyll is installed correctly (00:00.000 / 03:14.408, 1Gb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.032 / 03:14.441, 1Gb) (00:00.000 / 03:14.441, 1Gb) Use -? to get command line help (00:00.000 / 03:14.441, 1Gb) (00:00.000 / 03:14.441, 1Gb) Stack Dump (for debugging): (00:00.000 / 03:14.441, 1Gb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runJekyll(PublisherGenerator.java:3672) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runTool(PublisherGenerator.java:3559) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:358) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:390) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:217) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1481)