HL7 FHIR Implementation Guide: Rwanda HIV, published by Jembi Health Systems. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/jembi/Rwanda-HIV/ and changes regularly. See the Directory of published versions

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Resource Profile: VLSpecimen - Mappings

Active as of 2024-10-11

Mappings for the viral-load-specimen resource profile.

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

VLSpecimen
Specimen	clinical.diagnostics
identifier	FiveWs.identifier
identifier (appSampleCode)	FiveWs.identifier
identifier (remoteSampleCode)	FiveWs.identifier
identifier (sampleCode)	FiveWs.identifier
identifier (uniqueId)	FiveWs.identifier
accessionIdentifier	FiveWs.identifier
status	FiveWs.status
type	FiveWs.what[x]
subject	FiveWs.subject[x]
receivedTime	FiveWs.done[x]
request	FiveWs.why[x]
feature
type	FiveWs.what[x]
collection
collector	FiveWs.actor
collected[x]	FiveWs.init
collected[x] (collectedDateTime)	FiveWs.init
duration	FiveWs.init
container
location	FiveWs.where[x]

Mappings for RIM Mapping (http://hl7.org/v3)

VLSpecimen
Specimen	Entity, Role, or Act,Role[classCode=SPEC]
text	Act.text?
contained	N/A
modifierExtension	N/A
identifier	.id
identifier (appSampleCode)	.id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
identifier (remoteSampleCode)	.id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
identifier (sampleCode)	.id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
identifier (uniqueId)	.id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
accessionIdentifier	.participation[typeCode=SBJ].act[classCode=ACSN, moodCode=EVN].id
status	status
type	.code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
subject	.scoper or .scoper.playsRole
receivedTime	.participation[typeCode=SBJ].act[code=SPCREC, moodCode=EVN].effectiveTime
parent	.scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)
request	outboundRelationship[typeCode=FLFS].target
feature	.player.scopingRole[classCode=FEAT].scoper
id	n/a
extension	n/a
modifierExtension	N/A
type	.code
description	.text
collection	.participation[typeCode=SBJ].act[classCode=SPECCOLLECT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
collector	.participation[typeCode=PFM].role
collected[x]	.effectiveTime
collected[x] (collectedDateTime)	.effectiveTime
quantity	.participation[typeCode=SBJ].role[classCode=SPEC].player.quantity
method	.methodCode
device	participation[typeCode=DEV]
bodySite	.targetSiteCode
processing	.participation[typeCode=SBJ].act[code=SPCTRT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
description	.text
method	.code
additive	.participation[typeCode=CSM].role[classCode=ADTV].code
time[x]	.effectiveTime
time[x] (timeDateTime)	.effectiveTime
container	.player.scopingRole[classCode=CONT].scoper
id	n/a
extension	n/a
modifierExtension	N/A
device	participation[typeCode=DEV]
location	.participation[typeCode=LOC].role
specimenQuantity	.playedRole[classCode=CONT].quantity
note	.inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value

Mappings for HL7 V2 Mapping (http://hl7.org/v2)

VLSpecimen
Specimen
identifier	SPM-2
identifier (appSampleCode)	SPM-2
use	N/A
type	CX.5
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
identifier (remoteSampleCode)	SPM-2
use	N/A
type	CX.5
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
identifier (sampleCode)	SPM-2
use	N/A
type	CX.5
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
identifier (uniqueId)	SPM-2
use	N/A
type	CX.5
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
accessionIdentifier	SPM-30 (v2.7+)
status	SPM-20
type	SPM-4 and possibly SPM-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
receivedTime	SPM-18
request	ORC? OBR-2/3?
role	SPM-10
collection	SPM-14
collector	PRT
collected[x]	SPM-17
collected[x] (collectedDateTime)	SPM-17
quantity	SPM-12
method	SPM-7
device	SPM-14
bodySite	SPM-8 and SPM-9
fastingStatus[x]	OBR-
processing
additive	SPM-6
container
specimenQuantity	SAC-23 (value) SAC-24 (units
condition	SPM-24
note	OBX