@prefix fhir: . @prefix loinc: . @prefix owl: . @prefix rdf: . @prefix rdfs: . @prefix xsd: . # - resource ------------------------------------------------------------------- a fhir:Observation ; fhir:nodeRole fhir:treeRoot ; fhir:id [ fhir:v "microbiology-example-1"] ; # fhir:meta [ fhir:profile ( [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology"^^xsd:anyURI ; fhir:l ] ) ] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div [ fhir:v "

Generated Narrative: Observation microbiology-example-1

Profile: Microbiology

identifier: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id/M0001

status: Final

code: Microbiology studies (set)

subject: Anonymous Patient Female, DoB Unknown ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)

encounter: Encounter: identifier = https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/identifiers/visit#V000001; status = finished; class = ambulatory (v3 Code System ActCode#AMB); type = 1 month visit; period = 2023-09-15 --> (ongoing)

component

code: EBV-DNA (quantitative)

value: true

component

code: EBV-DNA copies/ml

value: 2450 {copies}/mL (Details: UCUM code{copies}/mL = '{copies}/mL')

component

code: EBV IgM anti-EA

value: false

component

code: EBV IgM anti-VCA

value: false

component

code: EBV IgG anti-VCA

value: true

component

code: EBV IgG EBNA

value: true

component

code: CMV-DNA

value: false

component

code: CMV IgM

value: false

component

code: CMV IgG

value: true

component

code: Parvovirus B19 DNA

value: false

component

code: Parvovirus B19 IgG

value: true

component

code: Parvovirus B19 IgM

value: false

component

code: HSV IgG

value: true

component

code: HSV IgM

value: false

component

code: Adenovirus IgG

value: true

component

code: Adenovirus IgM

value: false

component

code: VZV IgG

value: true

component

code: VZV IgM

value: false

component

code: Blood BKV-DNA

value: false

component

code: Urine BKV-DNA

value: false

component

code: BKV-DNA on kidney biopsy

value: false

component

code: BKV FISH on kidney biopsy

value: false

"^^rdf:XMLLiteral ] ] ; # fhir:identifier ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id"^^xsd:anyURI ; fhir:l ] ; fhir:value [ fhir:v "M0001" ] ] ) ; # fhir:status [ fhir:v "final"] ; # fhir:code [ fhir:coding ( [ a loinc:24323-8 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "24323-8" ] ; fhir:display [ fhir:v "Microbiology studies (set)" ] ] ) ] ; # fhir:subject [ fhir:l ; fhir:reference [ fhir:v "Patient/ExamplePatientTransplant1" ] ] ; # fhir:encounter [ fhir:l ; fhir:reference [ fhir:v "Encounter/VisitExample1" ] ] ; # fhir:component ( [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "ebv-dna" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "ebv-dna-copies" ] ] ) ] ; fhir:value [ a fhir:Quantity ; fhir:value [ fhir:v "2450"^^xsd:decimal ] ; fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "{copies}/mL" ] ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "ebv-igm-anti-ea" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "ebv-igm-anti-vca" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "ebv-igg-anti-vca" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "ebv-igg-ebna" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "cmv-dna" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "cmv-igm" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "cmv-igg" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "parvovirus-b19-dna" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "parvovirus-b19-igg" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "parvovirus-b19-igm" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "hsv-igg" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "hsv-igm" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "adenovirus-igg" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "adenovirus-igm" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "vzv-igg" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v true ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "vzv-igm" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "blood-bkv-dna" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "urine-bkv-dna" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "bkv-dna-kidney-biopsy" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] [ fhir:code [ fhir:coding ( [ fhir:system [ fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "bkv-fish-kidney-biopsy" ] ] ) ] ; fhir:value [ a fhir:Boolean ; fhir:v false ] ] ) . # # -------------------------------------------------------------------------------------