{
  "resourceType" : "ValueSet",
  "id" : "dm-microbiology-variable-vs",
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet dm-microbiology-variable-vs</b></p><a name=\"dm-microbiology-variable-vs\"> </a><a name=\"hcdm-microbiology-variable-vs\"> </a><ul><li>Include these codes as defined in <a href=\"CodeSystem-dm-variable-cs.html\"><code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs</code></a><span title=\"Version is not explicitly stated, which means it is fixed to the version provided in this specification\"> version &#x1F4E6;0.1.0-ci-build</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td><td><b><a href=\"ConceptMap-dm-microbiology-to-fhir.html\">DM microbiology columns → FHIR test codes</a></b></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46ebv_dna\">microbiology.ebv_dna</a></td><td style=\"color: #cccccc\">microbiology.ebv_dna</td><td>DMv1.2 column microbiology.ebv_dna: EBV nucleic acid test result.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/5002-1/\">5002-1</a><i>(MicrobiologyNucleicAcid.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46ebv_dna_copies\">microbiology.ebv_dna_copies</a></td><td style=\"color: #cccccc\">microbiology.ebv_dna_copies</td><td>DMv1.2 column microbiology.ebv_dna_copies: EBV-DNA (copies/ml).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/36923-1/\">36923-1</a><i>(MicrobiologyViralLoad.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46ebv_igm_anti_ea\">microbiology.ebv_igm_anti_ea</a></td><td style=\"color: #cccccc\">microbiology.ebv_igm_anti_ea</td><td>DMv1.2 column microbiology.ebv_igm_anti_ea: Presence of IgM antibodies against Epstein–Barr virus Early Antigen (EA).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-microbiology-cs.html#microbiology-cs-ebv-ea-igm\">ebv-ea-igm</a><i>(MicrobiologySerology.code. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46ebv_igm_anti_vca\">microbiology.ebv_igm_anti_vca</a></td><td style=\"color: #cccccc\">microbiology.ebv_igm_anti_vca</td><td>DMv1.2 column microbiology.ebv_igm_anti_vca: Presence of IgM antibodies against EBV Viral Capsid Antigen (VCA).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/30340-4/\">30340-4</a><i>(MicrobiologySerology.code. The OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46ebv_igg_anti_vca\">microbiology.ebv_igg_anti_vca</a></td><td style=\"color: #cccccc\">microbiology.ebv_igg_anti_vca</td><td>DMv1.2 column microbiology.ebv_igg_anti_vca: Presence of IgG antibodies against EBV Viral Capsid Antigen (VCA).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/30339-6/\">30339-6</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46ebv_igg_ebna\">microbiology.ebv_igg_ebna</a></td><td style=\"color: #cccccc\">microbiology.ebv_igg_ebna</td><td>DMv1.2 column microbiology.ebv_igg_ebna: Presence of IgG antibodies against EBV Nuclear Antigen (EBNA).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/7883-2/\">7883-2</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46cmv_dna\">microbiology.cmv_dna</a></td><td style=\"color: #cccccc\">microbiology.cmv_dna</td><td>DMv1.2 column microbiology.cmv_dna: CMV nucleic acid test result.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/4996-5/\">4996-5</a><i>(MicrobiologyNucleicAcid.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46cmv_dna_copies\">microbiology.cmv_dna_copies</a></td><td style=\"color: #cccccc\">microbiology.cmv_dna_copies</td><td>DMv1.2 column microbiology.cmv_dna_copies: CMV-DNA (copies/ml).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/29604-6/\">29604-6</a><i>(MicrobiologyViralLoad.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46cmv_igm\">microbiology.cmv_igm</a></td><td style=\"color: #cccccc\">microbiology.cmv_igm</td><td>DMv1.2 column microbiology.cmv_igm: Presence of IgM antibodies against cytomegalovirus (CMV).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/30325-5/\">30325-5</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46cmv_igg\">microbiology.cmv_igg</a></td><td style=\"color: #cccccc\">microbiology.cmv_igg</td><td>DMv1.2 column microbiology.cmv_igg: Presence of IgG antibodies against cytomegalovirus (CMV).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/13949-3/\">13949-3</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46parvovirus_b19_dna\">microbiology.parvovirus_b19_dna</a></td><td style=\"color: #cccccc\">microbiology.parvovirus_b19_dna</td><td>DMv1.2 column microbiology.parvovirus_b19_dna: Detection of parvovirus B19 DNA in the patient’s blood.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/50348-2/\">50348-2</a><i>(MicrobiologyNucleicAcid.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46parvovirus_b19_dna_copies\">microbiology.parvovirus_b19_dna_copies</a></td><td style=\"color: #cccccc\">microbiology.parvovirus_b19_dna_copies</td><td>DMv1.2 column microbiology.parvovirus_b19_dna_copies: Blood Parvovirus B19 DNA (copies/ml).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/49431-0/\">49431-0</a><i>(MicrobiologyViralLoad.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46parvovirus_b19_igg\">microbiology.parvovirus_b19_igg</a></td><td style=\"color: #cccccc\">microbiology.parvovirus_b19_igg</td><td>DMv1.2 column microbiology.parvovirus_b19_igg: Presence of IgG antibodies to parvovirus B19.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/29675-6/\">29675-6</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46parvovirus_b19_igm\">microbiology.parvovirus_b19_igm</a></td><td style=\"color: #cccccc\">microbiology.parvovirus_b19_igm</td><td>DMv1.2 column microbiology.parvovirus_b19_igm: Presence of IgM antibodies to parvovirus B19.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/7981-4/\">7981-4</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46hsv_igg\">microbiology.hsv_igg</a></td><td style=\"color: #cccccc\">microbiology.hsv_igg</td><td>DMv1.2 column microbiology.hsv_igg: Presence of IgG antibodies to herpes simplex virus (HSV).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/19106-4/\">19106-4</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46hsv_igm\">microbiology.hsv_igm</a></td><td style=\"color: #cccccc\">microbiology.hsv_igm</td><td>DMv1.2 column microbiology.hsv_igm: Presence of IgM antibodies to HSV.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/25435-9/\">25435-9</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46adenovirus_igg\">microbiology.adenovirus_igg</a></td><td style=\"color: #cccccc\">microbiology.adenovirus_igg</td><td>DMv1.2 column microbiology.adenovirus_igg: Presence of IgG antibodies to adenovirus.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/41162-9/\">41162-9</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46adenovirus_igm\">microbiology.adenovirus_igm</a></td><td style=\"color: #cccccc\">microbiology.adenovirus_igm</td><td>DMv1.2 column microbiology.adenovirus_igm: Presence of IgM antibodies to adenovirus.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/21054-2/\">21054-2</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46blood_adenovirus_dna\">microbiology.blood_adenovirus_dna</a></td><td style=\"color: #cccccc\">microbiology.blood_adenovirus_dna</td><td>DMv1.2 column microbiology.blood_adenovirus_dna: Blood Adenovirus DNA Result.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/86511-3/\">86511-3</a><i>(MicrobiologyNucleicAcid.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46blood_adenovirus_dna_copies\">microbiology.blood_adenovirus_dna_copies</a></td><td style=\"color: #cccccc\">microbiology.blood_adenovirus_dna_copies</td><td>DMv1.2 column microbiology.blood_adenovirus_dna_copies: Blood Adenovirus DNA (copies/ml).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/49341-1/\">49341-1</a><i>(MicrobiologyViralLoad.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46vzv_igg\">microbiology.vzv_igg</a></td><td style=\"color: #cccccc\">microbiology.vzv_igg</td><td>DMv1.2 column microbiology.vzv_igg: Presence of IgG antibodies to varicella–zoster virus.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/19162-7/\">19162-7</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46vzv_igm\">microbiology.vzv_igm</a></td><td style=\"color: #cccccc\">microbiology.vzv_igm</td><td>DMv1.2 column microbiology.vzv_igm: Presence of IgM antibodies to varicella–zoster virus.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/21597-0/\">21597-0</a><i>(MicrobiologySerology.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46blood_bkv_dna\">microbiology.blood_bkv_dna</a></td><td style=\"color: #cccccc\">microbiology.blood_bkv_dna</td><td>DMv1.2 column microbiology.blood_bkv_dna: Blood BKV-DNA.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/63475-8/\">63475-8</a><i>(MicrobiologyNucleicAcid.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46blood_bkv_dna_copies\">microbiology.blood_bkv_dna_copies</a></td><td style=\"color: #cccccc\">microbiology.blood_bkv_dna_copies</td><td>DMv1.2 column microbiology.blood_bkv_dna_copies: Blood BKV-DNA (copies/ml).</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/49345-2/\">49345-2</a><i>(MicrobiologyViralLoad.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46urine_bkv_dna\">microbiology.urine_bkv_dna</a></td><td style=\"color: #cccccc\">microbiology.urine_bkv_dna</td><td>DMv1.2 column microbiology.urine_bkv_dna: Urine BKV-DNA.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/33978-8/\">33978-8</a><i>(MicrobiologyNucleicAcid.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46bkv_dna_kidney_biopsy\">microbiology.bkv_dna_kidney_biopsy</a></td><td style=\"color: #cccccc\">microbiology.bkv_dna_kidney_biopsy</td><td>DMv1.2 column microbiology.bkv_dna_kidney_biopsy: BKV-DNA on kidney biopsy.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/47251-4/\">47251-4</a><i>(MicrobiologyNucleicAcid.code. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue.)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46bkv_fish_kidney_biopsy\">microbiology.bkv_fish_kidney_biopsy</a></td><td style=\"color: #cccccc\">microbiology.bkv_fish_kidney_biopsy</td><td>DMv1.2 column microbiology.bkv_fish_kidney_biopsy: BKV FISH on kidney biopsy.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-microbiology-cs.html#microbiology-cs-bkv-dna-ish-tissue\">bkv-dna-ish-tissue</a><i>(MicrobiologyNucleicAcid.code. LOINC has no in-situ hybridisation code for BK virus in tissue.)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46blood_colture\">microbiology.blood_colture</a></td><td style=\"color: #cccccc\">microbiology.blood_colture</td><td>DMv1.2 column microbiology.blood_colture: Blood colture.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/600-7/\">600-7</a><i>(MicrobiologyCulture.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46urine_colture\">microbiology.urine_colture</a></td><td style=\"color: #cccccc\">microbiology.urine_colture</td><td>DMv1.2 column microbiology.urine_colture: Urine colture.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"https://loinc.org/630-4/\">630-4</a><i>(MicrobiologyCulture.code)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46other_positivity\">microbiology.other_positivity</a></td><td style=\"color: #cccccc\">microbiology.other_positivity</td><td>DMv1.2 column microbiology.other_positivity: Other positivity.</td><td/></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46ebv_hepatitis_liver\">microbiology.ebv_hepatitis_liver</a></td><td style=\"color: #cccccc\">microbiology.ebv_hepatitis_liver</td><td>DMv1.2 column microbiology.ebv_hepatitis_liver: EBV-Hepatitis on liver.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-microbiology-cs.html#microbiology-cs-ebv-hepatitis-liver\">ebv-hepatitis-liver</a><i>(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); false → the same Condition with verificationStatus #refuted; blank → no Condition.)</i></td></tr><tr><td><a href=\"CodeSystem-dm-variable-cs.html#dm-variable-cs-microbiology.46evidence_bkvan\">microbiology.evidence_bkvan</a></td><td style=\"color: #cccccc\">microbiology.evidence_bkvan</td><td>DMv1.2 column microbiology.evidence_bkvan: Histological evidence of BKVAN.</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-microbiology-cs.html#microbiology-cs-evidence-bkvan\">evidence-bkvan</a><i>(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); No → the same Condition with verificationStatus #refuted; Unknown or blank → no Condition.)</i></td></tr></table></li></ul></div>"
  },
  "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ValueSet/dm-microbiology-variable-vs",
  "version" : "0.1.0-ci-build",
  "name" : "DmMicrobiologyVariableVS",
  "title" : "PROTECT-CHILD DM microbiology variables",
  "status" : "draft",
  "experimental" : true,
  "date" : "2026-09-28T06:51:47+00:00",
  "publisher" : "Protect Child",
  "contact" : [{
    "name" : "Protect Child",
    "telecom" : [{
      "system" : "url",
      "value" : "https://protect-child.eu/"
    }]
  }],
  "description" : "The columns of the DMv1.2 microbiology table, as DmVariableCS codes. Source value set of ConceptMap DmMicrobiologyToFhir.",
  "compose" : {
    "include" : [{
      "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
      "concept" : [{
        "code" : "microbiology.ebv_dna"
      },
      {
        "code" : "microbiology.ebv_dna_copies"
      },
      {
        "code" : "microbiology.ebv_igm_anti_ea"
      },
      {
        "code" : "microbiology.ebv_igm_anti_vca"
      },
      {
        "code" : "microbiology.ebv_igg_anti_vca"
      },
      {
        "code" : "microbiology.ebv_igg_ebna"
      },
      {
        "code" : "microbiology.cmv_dna"
      },
      {
        "code" : "microbiology.cmv_dna_copies"
      },
      {
        "code" : "microbiology.cmv_igm"
      },
      {
        "code" : "microbiology.cmv_igg"
      },
      {
        "code" : "microbiology.parvovirus_b19_dna"
      },
      {
        "code" : "microbiology.parvovirus_b19_dna_copies"
      },
      {
        "code" : "microbiology.parvovirus_b19_igg"
      },
      {
        "code" : "microbiology.parvovirus_b19_igm"
      },
      {
        "code" : "microbiology.hsv_igg"
      },
      {
        "code" : "microbiology.hsv_igm"
      },
      {
        "code" : "microbiology.adenovirus_igg"
      },
      {
        "code" : "microbiology.adenovirus_igm"
      },
      {
        "code" : "microbiology.blood_adenovirus_dna"
      },
      {
        "code" : "microbiology.blood_adenovirus_dna_copies"
      },
      {
        "code" : "microbiology.vzv_igg"
      },
      {
        "code" : "microbiology.vzv_igm"
      },
      {
        "code" : "microbiology.blood_bkv_dna"
      },
      {
        "code" : "microbiology.blood_bkv_dna_copies"
      },
      {
        "code" : "microbiology.urine_bkv_dna"
      },
      {
        "code" : "microbiology.bkv_dna_kidney_biopsy"
      },
      {
        "code" : "microbiology.bkv_fish_kidney_biopsy"
      },
      {
        "code" : "microbiology.blood_colture"
      },
      {
        "code" : "microbiology.urine_colture"
      },
      {
        "code" : "microbiology.other_positivity"
      },
      {
        "code" : "microbiology.ebv_hepatitis_liver"
      },
      {
        "code" : "microbiology.evidence_bkvan"
      }]
    }]
  }
}