pcMicrobiologyLm
type: StructureDefinition
node role: treeRoot
resource.id:
  value: pcMicrobiologyLm
domain resource.text:
  narrative.status:
    value: extensions
  narrative.div: Generated Narrative: StructureDefinition pcMicrobiologyLm Name Flags Card. Type Description & Constraints<img src="[binary]" alt="doco" style="background-color: inherit"/> pcMicrobiologyLm 0..* Base Microbiology logical model #xD; microbiologyId 1..1 string microbiology_id #xD; visitId 1..1 string visit_id #xD; donorId 0..1 string donor_id #xD; ebvDna 0..1 boolean ebv_dna #xD; ebvDnaCopies 0..1 decimal ebv_dna_copies #xD; ebvIgmAntiEa 0..1 boolean ebv_igm_anti_ea #xD; ebvIgmAntiVca 0..1 boolean ebv_igm_anti_vca #xD; ebvIggAntiVca 0..1 boolean ebv_igg_anti_vca #xD; ebvIggEbna 0..1 boolean ebv_igg_ebna #xD; cmvDna 0..1 boolean cmv_dna #xD; cmvDnaCopies 0..1 decimal cmv_dna_copies #xD; cmvIgm 0..1 boolean cmv_igm #xD; cmvIgg 0..1 boolean cmv_igg #xD; parvovirusB19Dna 0..1 boolean parvovirus_b19_dna #xD; parvovirusB19DnaCopies 0..1 decimal parvovirus_b19_dna_copies #xD; parvovirusB19Igg 0..1 boolean parvovirus_b19_igg #xD; parvovirusB19Igm 0..1 boolean parvovirus_b19_igm #xD; hsvIgg 0..1 boolean hsv_igg #xD; hsvIgm 0..1 boolean hsv_igm #xD; adenovirusIgg 0..1 boolean adenovirus_igg #xD; adenovirusIgm 0..1 boolean adenovirus_igm #xD; bloodAdenovirusDna 0..1 boolean blood_adenovirus_dna #xD; bloodAdenovirusDnaCopies 0..1 decimal blood_adenovirus_dna_copies #xD; vzvIgg 0..1 boolean vzv_igg #xD; vzvIgm 0..1 boolean vzv_igm #xD; bloodBkvDna 0..1 boolean blood_bkv_dna #xD; bloodBkvDnaCopies 0..1 decimal blood_bkv_dna_copies #xD; urineBkvDna 0..1 boolean urine_bkv_dna #xD; bkvDnaKidneyBiopsy 0..1 boolean bkv_dna_kidney_biopsy #xD; bkvFishKidneyBiopsy 0..1 boolean bkv_fish_kidney_biopsy #xD; bloodColture 0..1 boolean blood_colture #xD; urineColture 0..1 boolean urine_colture #xD; otherPositivity 0..1 string other_positivity #xD; ebvHepatitisLiver 0..1 boolean ebv_hepatitis_liver #xD; evidenceBkvan 0..1 code evidence_bkvan #xD; <img src="[binary]" alt="doco" style="background-color: inherit"/> Documentation for this format
structure definition.url:
  value: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm
structure definition.version:
  value: 0.1.0-ci-build
structure definition.name:
  value: PcMicrobiology
structure definition.title:
  value: Microbiology logical model
structure definition.status:
  value: draft
structure definition.date:
  value: 2026-08-11T12:50:29+00:00
structure definition.publisher:
  value: Protect Child
structure definition.contact:
  index: 0
  contact detail.name:
    value: Protect Child
  contact detail.telecom:
    index: 0
    contact point.system:
      value: url
    contact point.value:
      value: https://protect-child.eu/
structure definition.description:
  value: Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence.
structure definition.fhir version:
  value: 4.0.1
structure definition.kind:
  value: logical
structure definition.abstract:
  value: false
structure definition.type:
  value: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm
structure definition.base definition:
  value: http://hl7.org/fhir/StructureDefinition/Base
  link: http://hl7.org/fhir/StructureDefinition/Base
structure definition.derivation:
  value: specialization
structure definition.snapshot:
  element.extension:
    index: 0
    extension.url:
      value: http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version
    extension.value string:
      value: 4.0.1
  structure definition.snapshot.element:
    index: 0
    element.id:
      value: pcMicrobiologyLm
    element definition.path:
      value: pcMicrobiologyLm
    element definition.short:
      value: Microbiology logical model
    element definition.definition:
      value: Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence.
    element definition.min:
      value: 0
    element definition.max:
      value: *
    element definition.base:
      element definition.base.path:
        value: Base
      element definition.base.min:
        value: 0
      element definition.base.max:
        value: *
    element definition.is modifier:
      value: false
  structure definition.snapshot.element:
    index: 1
    element.id:
      value: pcMicrobiologyLm.microbiologyId
    element definition.path:
      value: pcMicrobiologyLm.microbiologyId
    element definition.short:
      value: microbiology_id
    element definition.definition:
      value: Microbiology record ID.
    element definition.min:
      value: 1
    element definition.max:
      value: 1
    element definition.base:
      element definition.base.path:
        value: pcMicrobiologyLm.microbiologyId
      element definition.base.min:
        value: 1
      element definition.base.max:
        value: 1
    element definition.type:
      index: 0
      element definition.type.code:
        value: string
  structure definition.snapshot.element:
    index: 2
    element.id:
      value: pcMicrobiologyLm.visitId
    element definition.path:
      value: pcMicrobiologyLm.visitId
    element definition.short:
      value: visit_id
    element definition.definition:
      value: FK to visit (Mandatory).
    element definition.min:
      value: 1
    element definition.max:
      value: 1
    element definition.base:
      element definition.base.path:
        value: pcMicrobiologyLm.visitId
      element definition.base.min:
        value: 1
      element definition.base.max:
        value: 1
    element definition.type:
      index: 0
      element definition.type.code:
        value: string
  structure definition.snapshot.element:
    index: 3
    element.id:
      value: pcMicrobiologyLm.donorId
    element definition.path:
      value: pcMicrobiologyLm.donorId
    element definition.short:
      value: donor_id
    element definition.definition:
      value: FK to donor (Optional).
    element definition.min:
      value: 0
    element definition.max:
      value: 1
    element definition.base:
      element definition.base.path:
        value: pcMicrobiologyLm.donorId
      element definition.base.min:
        value: 0
      element definition.base.max:
        value: 1
    element definition.type:
      index: 0
      element definition.type.code:
        value: string
  structure definition.snapshot.element:
    index: 4
    element.id:
      value: pcMicrobiologyLm.ebvDna
    element definition.path:
      value: pcMicrobiologyLm.ebvDna
    element definition.short:
      value: ebv_dna
    element definition.definition:
      value: EBV-DNA result.
    element definition.min:
      value: 0
    element definition.max:
      value: 1
    element definition.base:
      element definition.base.path:
        value: pcMicrobiologyLm.ebvDna
      element definition.base.min:
        value: 0
      element definition.base.max:
        value: 1
    element definition.type:
      index: 0
      element definition.type.code:
        value: boolean
  structure definition.snapshot.element:
    index: 5
    element.id:
      value: pcMicrobiologyLm.ebvDnaCopies
    element definition.path:
      value: pcMicrobiologyLm.ebvDnaCopies
    element definition.short:
      value: ebv_dna_copies
    element definition.definition:
      value: EBV-DNA copies/ml.
    element definition.min:
      value: 0
    element definition.max:
      value: 1
    element definition.base:
      element definition.base.path:
        value: pcMicrobiologyLm.ebvDnaCopies
      element definition.base.min:
        value: 0
      element definition.base.max:
        value: 1
    element definition.type:
      index: 0
      element definition.type.code:
        value: decimal

index: 6
element.id:
  value: pcMicrobiologyLm.ebvIgmAntiEa
element definition.path:
  value: pcMicrobiologyLm.ebvIgmAntiEa
element definition.short:
  value: ebv_igm_anti_ea
element definition.definition:
  value: EBV IgM anti-EA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.ebvIgmAntiEa
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 7
element.id:
  value: pcMicrobiologyLm.ebvIgmAntiVca
element definition.path:
  value: pcMicrobiologyLm.ebvIgmAntiVca
element definition.short:
  value: ebv_igm_anti_vca
element definition.definition:
  value: EBV IgM anti-VCA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.ebvIgmAntiVca
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 8
element.id:
  value: pcMicrobiologyLm.ebvIggAntiVca
element definition.path:
  value: pcMicrobiologyLm.ebvIggAntiVca
element definition.short:
  value: ebv_igg_anti_vca
element definition.definition:
  value: EBV IgG anti-VCA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.ebvIggAntiVca
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 9
element.id:
  value: pcMicrobiologyLm.ebvIggEbna
element definition.path:
  value: pcMicrobiologyLm.ebvIggEbna
element definition.short:
  value: ebv_igg_ebna
element definition.definition:
  value: EBV IgG EBNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.ebvIggEbna
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 10
element.id:
  value: pcMicrobiologyLm.cmvDna
element definition.path:
  value: pcMicrobiologyLm.cmvDna
element definition.short:
  value: cmv_dna
element definition.definition:
  value: CMV-DNA result.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.cmvDna
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 11
element.id:
  value: pcMicrobiologyLm.cmvDnaCopies
element definition.path:
  value: pcMicrobiologyLm.cmvDnaCopies
element definition.short:
  value: cmv_dna_copies
element definition.definition:
  value: CMV-DNA copies/ml.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.cmvDnaCopies
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: decimal

index: 12
element.id:
  value: pcMicrobiologyLm.cmvIgm
element definition.path:
  value: pcMicrobiologyLm.cmvIgm
element definition.short:
  value: cmv_igm
element definition.definition:
  value: CMV IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.cmvIgm
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 13
element.id:
  value: pcMicrobiologyLm.cmvIgg
element definition.path:
  value: pcMicrobiologyLm.cmvIgg
element definition.short:
  value: cmv_igg
element definition.definition:
  value: CMV IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.cmvIgg
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 14
element.id:
  value: pcMicrobiologyLm.parvovirusB19Dna
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19Dna
element definition.short:
  value: parvovirus_b19_dna
element definition.definition:
  value: Parvovirus B19 DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.parvovirusB19Dna
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 15
element.id:
  value: pcMicrobiologyLm.parvovirusB19DnaCopies
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19DnaCopies
element definition.short:
  value: parvovirus_b19_dna_copies
element definition.definition:
  value: Parvovirus B19 DNA copies/ml.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.parvovirusB19DnaCopies
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: decimal

index: 16
element.id:
  value: pcMicrobiologyLm.parvovirusB19Igg
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19Igg
element definition.short:
  value: parvovirus_b19_igg
element definition.definition:
  value: Parvovirus B19 IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.parvovirusB19Igg
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 17
element.id:
  value: pcMicrobiologyLm.parvovirusB19Igm
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19Igm
element definition.short:
  value: parvovirus_b19_igm
element definition.definition:
  value: Parvovirus B19 IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.parvovirusB19Igm
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 18
element.id:
  value: pcMicrobiologyLm.hsvIgg
element definition.path:
  value: pcMicrobiologyLm.hsvIgg
element definition.short:
  value: hsv_igg
element definition.definition:
  value: HSV IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.hsvIgg
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 19
element.id:
  value: pcMicrobiologyLm.hsvIgm
element definition.path:
  value: pcMicrobiologyLm.hsvIgm
element definition.short:
  value: hsv_igm
element definition.definition:
  value: HSV IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.hsvIgm
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 20
element.id:
  value: pcMicrobiologyLm.adenovirusIgg
element definition.path:
  value: pcMicrobiologyLm.adenovirusIgg
element definition.short:
  value: adenovirus_igg
element definition.definition:
  value: Adenovirus IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.adenovirusIgg
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 21
element.id:
  value: pcMicrobiologyLm.adenovirusIgm
element definition.path:
  value: pcMicrobiologyLm.adenovirusIgm
element definition.short:
  value: adenovirus_igm
element definition.definition:
  value: Adenovirus IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.adenovirusIgm
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 22
element.id:
  value: pcMicrobiologyLm.bloodAdenovirusDna
element definition.path:
  value: pcMicrobiologyLm.bloodAdenovirusDna
element definition.short:
  value: blood_adenovirus_dna
element definition.definition:
  value: Blood Adenovirus DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.bloodAdenovirusDna
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 23
element.id:
  value: pcMicrobiologyLm.bloodAdenovirusDnaCopies
element definition.path:
  value: pcMicrobiologyLm.bloodAdenovirusDnaCopies
element definition.short:
  value: blood_adenovirus_dna_copies
element definition.definition:
  value: Blood Adenovirus DNA copies/ml.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.bloodAdenovirusDnaCopies
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: decimal

index: 24
element.id:
  value: pcMicrobiologyLm.vzvIgg
element definition.path:
  value: pcMicrobiologyLm.vzvIgg
element definition.short:
  value: vzv_igg
element definition.definition:
  value: VZV IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.vzvIgg
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 25
element.id:
  value: pcMicrobiologyLm.vzvIgm
element definition.path:
  value: pcMicrobiologyLm.vzvIgm
element definition.short:
  value: vzv_igm
element definition.definition:
  value: VZV IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.vzvIgm
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 26
element.id:
  value: pcMicrobiologyLm.bloodBkvDna
element definition.path:
  value: pcMicrobiologyLm.bloodBkvDna
element definition.short:
  value: blood_bkv_dna
element definition.definition:
  value: Blood BKV-DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.bloodBkvDna
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 27
element.id:
  value: pcMicrobiologyLm.bloodBkvDnaCopies
element definition.path:
  value: pcMicrobiologyLm.bloodBkvDnaCopies
element definition.short:
  value: blood_bkv_dna_copies
element definition.definition:
  value: Blood BKV-DNA copies/ml.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.bloodBkvDnaCopies
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: decimal

index: 28
element.id:
  value: pcMicrobiologyLm.urineBkvDna
element definition.path:
  value: pcMicrobiologyLm.urineBkvDna
element definition.short:
  value: urine_bkv_dna
element definition.definition:
  value: Urine BKV-DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.urineBkvDna
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 29
element.id:
  value: pcMicrobiologyLm.bkvDnaKidneyBiopsy
element definition.path:
  value: pcMicrobiologyLm.bkvDnaKidneyBiopsy
element definition.short:
  value: bkv_dna_kidney_biopsy
element definition.definition:
  value: BKV-DNA on kidney biopsy (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.bkvDnaKidneyBiopsy
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 30
element.id:
  value: pcMicrobiologyLm.bkvFishKidneyBiopsy
element definition.path:
  value: pcMicrobiologyLm.bkvFishKidneyBiopsy
element definition.short:
  value: bkv_fish_kidney_biopsy
element definition.definition:
  value: BKV FISH on kidney biopsy (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.bkvFishKidneyBiopsy
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 31
element.id:
  value: pcMicrobiologyLm.bloodColture
element definition.path:
  value: pcMicrobiologyLm.bloodColture
element definition.short:
  value: blood_colture
element definition.definition:
  value: Blood culture (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.bloodColture
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 32
element.id:
  value: pcMicrobiologyLm.urineColture
element definition.path:
  value: pcMicrobiologyLm.urineColture
element definition.short:
  value: urine_colture
element definition.definition:
  value: Urine culture (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.urineColture
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 33
element.id:
  value: pcMicrobiologyLm.otherPositivity
element definition.path:
  value: pcMicrobiologyLm.otherPositivity
element definition.short:
  value: other_positivity
element definition.definition:
  value: Other positivity (free text, Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.otherPositivity
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: string

index: 34
element.id:
  value: pcMicrobiologyLm.ebvHepatitisLiver
element definition.path:
  value: pcMicrobiologyLm.ebvHepatitisLiver
element definition.short:
  value: ebv_hepatitis_liver
element definition.definition:
  value: EBV hepatitis on liver (Liver).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.ebvHepatitisLiver
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 35
element.id:
  value: pcMicrobiologyLm.evidenceBkvan
element definition.path:
  value: pcMicrobiologyLm.evidenceBkvan
element definition.short:
  value: evidence_bkvan
element definition.definition:
  value: Histological evidence of BKVAN (No/Yes/Unknown).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.base:
  element definition.base.path:
    value: pcMicrobiologyLm.evidenceBkvan
  element definition.base.min:
    value: 0
  element definition.base.max:
    value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: code

structure definition.differential.element:
  index: 0
  element.id:
    value: pcMicrobiologyLm
  element definition.path:
    value: pcMicrobiologyLm
  element definition.short:
    value: Microbiology logical model
  element definition.definition:
    value: Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence.
structure definition.differential.element:
  index: 1
  element.id:
    value: pcMicrobiologyLm.microbiologyId
  element definition.path:
    value: pcMicrobiologyLm.microbiologyId
  element definition.short:
    value: microbiology_id
  element definition.definition:
    value: Microbiology record ID.
  element definition.min:
    value: 1
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: string
structure definition.differential.element:
  index: 2
  element.id:
    value: pcMicrobiologyLm.visitId
  element definition.path:
    value: pcMicrobiologyLm.visitId
  element definition.short:
    value: visit_id
  element definition.definition:
    value: FK to visit (Mandatory).
  element definition.min:
    value: 1
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: string
structure definition.differential.element:
  index: 3
  element.id:
    value: pcMicrobiologyLm.donorId
  element definition.path:
    value: pcMicrobiologyLm.donorId
  element definition.short:
    value: donor_id
  element definition.definition:
    value: FK to donor (Optional).
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: string
structure definition.differential.element:
  index: 4
  element.id:
    value: pcMicrobiologyLm.ebvDna
  element definition.path:
    value: pcMicrobiologyLm.ebvDna
  element definition.short:
    value: ebv_dna
  element definition.definition:
    value: EBV-DNA result.
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: boolean
structure definition.differential.element:
  index: 5
  element.id:
    value: pcMicrobiologyLm.ebvDnaCopies
  element definition.path:
    value: pcMicrobiologyLm.ebvDnaCopies
  element definition.short:
    value: ebv_dna_copies
  element definition.definition:
    value: EBV-DNA copies/ml.
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: decimal
structure definition.differential.element:
  index: 6
  element.id:
    value: pcMicrobiologyLm.ebvIgmAntiEa
  element definition.path:
    value: pcMicrobiologyLm.ebvIgmAntiEa
  element definition.short:
    value: ebv_igm_anti_ea
  element definition.definition:
    value: EBV IgM anti-EA.
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: boolean
structure definition.differential.element:
  index: 7
  element.id:
    value: pcMicrobiologyLm.ebvIgmAntiVca
  element definition.path:
    value: pcMicrobiologyLm.ebvIgmAntiVca
  element definition.short:
    value: ebv_igm_anti_vca
  element definition.definition:
    value: EBV IgM anti-VCA.
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: boolean
structure definition.differential.element:
  index: 8
  element.id:
    value: pcMicrobiologyLm.ebvIggAntiVca
  element definition.path:
    value: pcMicrobiologyLm.ebvIggAntiVca
  element definition.short:
    value: ebv_igg_anti_vca
  element definition.definition:
    value: EBV IgG anti-VCA.
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: boolean
structure definition.differential.element:
  index: 9
  element.id:
    value: pcMicrobiologyLm.ebvIggEbna
  element definition.path:
    value: pcMicrobiologyLm.ebvIggEbna
  element definition.short:
    value: ebv_igg_ebna
  element definition.definition:
    value: EBV IgG EBNA.
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: boolean
structure definition.differential.element:
  index: 10
  element.id:
    value: pcMicrobiologyLm.cmvDna
  element definition.path:
    value: pcMicrobiologyLm.cmvDna
  element definition.short:
    value: cmv_dna
  element definition.definition:
    value: CMV-DNA result.
  element definition.min:
    value: 0
  element definition.max:
    value: 1
  element definition.type:
    index: 0
    element definition.type.code:
      value: boolean
structure definition.differential.element:
  index: 11
  element.id:
    value: pcMicrobiologyLm.cmvDnaCopies
  element definition.path:
    value: pcMicrobiologyLm.cmvDnaCopies
  element definition.short:
    value: cmv_dna_copies
  element definition.definition:
    value: CMV-DNA copies/ml.
  element definition.min:
    value: 0

value: 1

index: 0
element definition.type.code:
  value: decimal

index: 12
element.id:
  value: pcMicrobiologyLm.cmvIgm
element definition.path:
  value: pcMicrobiologyLm.cmvIgm
element definition.short:
  value: cmv_igm
element definition.definition:
  value: CMV IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 13
element.id:
  value: pcMicrobiologyLm.cmvIgg
element definition.path:
  value: pcMicrobiologyLm.cmvIgg
element definition.short:
  value: cmv_igg
element definition.definition:
  value: CMV IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 14
element.id:
  value: pcMicrobiologyLm.parvovirusB19Dna
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19Dna
element definition.short:
  value: parvovirus_b19_dna
element definition.definition:
  value: Parvovirus B19 DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 15
element.id:
  value: pcMicrobiologyLm.parvovirusB19DnaCopies
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19DnaCopies
element definition.short:
  value: parvovirus_b19_dna_copies
element definition.definition:
  value: Parvovirus B19 DNA copies/ml.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: decimal

index: 16
element.id:
  value: pcMicrobiologyLm.parvovirusB19Igg
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19Igg
element definition.short:
  value: parvovirus_b19_igg
element definition.definition:
  value: Parvovirus B19 IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 17
element.id:
  value: pcMicrobiologyLm.parvovirusB19Igm
element definition.path:
  value: pcMicrobiologyLm.parvovirusB19Igm
element definition.short:
  value: parvovirus_b19_igm
element definition.definition:
  value: Parvovirus B19 IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 18
element.id:
  value: pcMicrobiologyLm.hsvIgg
element definition.path:
  value: pcMicrobiologyLm.hsvIgg
element definition.short:
  value: hsv_igg
element definition.definition:
  value: HSV IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 19
element.id:
  value: pcMicrobiologyLm.hsvIgm
element definition.path:
  value: pcMicrobiologyLm.hsvIgm
element definition.short:
  value: hsv_igm
element definition.definition:
  value: HSV IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 20
element.id:
  value: pcMicrobiologyLm.adenovirusIgg
element definition.path:
  value: pcMicrobiologyLm.adenovirusIgg
element definition.short:
  value: adenovirus_igg
element definition.definition:
  value: Adenovirus IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 21
element.id:
  value: pcMicrobiologyLm.adenovirusIgm
element definition.path:
  value: pcMicrobiologyLm.adenovirusIgm
element definition.short:
  value: adenovirus_igm
element definition.definition:
  value: Adenovirus IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 22
element.id:
  value: pcMicrobiologyLm.bloodAdenovirusDna
element definition.path:
  value: pcMicrobiologyLm.bloodAdenovirusDna
element definition.short:
  value: blood_adenovirus_dna
element definition.definition:
  value: Blood Adenovirus DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 23
element.id:
  value: pcMicrobiologyLm.bloodAdenovirusDnaCopies
element definition.path:
  value: pcMicrobiologyLm.bloodAdenovirusDnaCopies
element definition.short:
  value: blood_adenovirus_dna_copies
element definition.definition:
  value: Blood Adenovirus DNA copies/ml.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: decimal

index: 24
element.id:
  value: pcMicrobiologyLm.vzvIgg
element definition.path:
  value: pcMicrobiologyLm.vzvIgg
element definition.short:
  value: vzv_igg
element definition.definition:
  value: VZV IgG.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 25
element.id:
  value: pcMicrobiologyLm.vzvIgm
element definition.path:
  value: pcMicrobiologyLm.vzvIgm
element definition.short:
  value: vzv_igm
element definition.definition:
  value: VZV IgM.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 26
element.id:
  value: pcMicrobiologyLm.bloodBkvDna
element definition.path:
  value: pcMicrobiologyLm.bloodBkvDna
element definition.short:
  value: blood_bkv_dna
element definition.definition:
  value: Blood BKV-DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 27
element.id:
  value: pcMicrobiologyLm.bloodBkvDnaCopies
element definition.path:
  value: pcMicrobiologyLm.bloodBkvDnaCopies
element definition.short:
  value: blood_bkv_dna_copies
element definition.definition:
  value: Blood BKV-DNA copies/ml.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: decimal

index: 28
element.id:
  value: pcMicrobiologyLm.urineBkvDna
element definition.path:
  value: pcMicrobiologyLm.urineBkvDna
element definition.short:
  value: urine_bkv_dna
element definition.definition:
  value: Urine BKV-DNA.
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 29
element.id:
  value: pcMicrobiologyLm.bkvDnaKidneyBiopsy
element definition.path:
  value: pcMicrobiologyLm.bkvDnaKidneyBiopsy
element definition.short:
  value: bkv_dna_kidney_biopsy
element definition.definition:
  value: BKV-DNA on kidney biopsy (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 30
element.id:
  value: pcMicrobiologyLm.bkvFishKidneyBiopsy
element definition.path:
  value: pcMicrobiologyLm.bkvFishKidneyBiopsy
element definition.short:
  value: bkv_fish_kidney_biopsy
element definition.definition:
  value: BKV FISH on kidney biopsy (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 31
element.id:
  value: pcMicrobiologyLm.bloodColture
element definition.path:
  value: pcMicrobiologyLm.bloodColture
element definition.short:
  value: blood_colture
element definition.definition:
  value: Blood culture (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 32
element.id:
  value: pcMicrobiologyLm.urineColture
element definition.path:
  value: pcMicrobiologyLm.urineColture
element definition.short:
  value: urine_colture
element definition.definition:
  value: Urine culture (Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 33
element.id:
  value: pcMicrobiologyLm.otherPositivity
element definition.path:
  value: pcMicrobiologyLm.otherPositivity
element definition.short:
  value: other_positivity
element definition.definition:
  value: Other positivity (free text, Kidney).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: string

index: 34
element.id:
  value: pcMicrobiologyLm.ebvHepatitisLiver
element definition.path:
  value: pcMicrobiologyLm.ebvHepatitisLiver
element definition.short:
  value: ebv_hepatitis_liver
element definition.definition:
  value: EBV hepatitis on liver (Liver).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: boolean

index: 35
element.id:
  value: pcMicrobiologyLm.evidenceBkvan
element definition.path:
  value: pcMicrobiologyLm.evidenceBkvan
element definition.short:
  value: evidence_bkvan
element definition.definition:
  value: Histological evidence of BKVAN (No/Yes/Unknown).
element definition.min:
  value: 0
element definition.max:
  value: 1
element definition.type:
  index: 0
  element definition.type.code:
    value: code