{
  "resourceType" : "Observation",
  "id" : "KidneyMicrobiology1",
  "meta" : {
    "profile" : ["https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology"]
  },
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation KidneyMicrobiology1</b></p><a name=\"KidneyMicrobiology1\"> </a><a name=\"hcKidneyMicrobiology1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-microbiology.html\">Microbiology</a></p></div><p><b>Transplant type context</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/transplant-type-cs kidney}\">Kidney transplant</span></p><p><b>identifier</b>: <a href=\"NamingSystem-NsProtectChildId.html\" title=\"Single identifier namespace for PROTECT-CHILD record business identifiers (patient, donor, visit, transplant, and all per-visit clinical/lab/medication/specimen/event records). The resource type distinguishes the kind of record. Identifiers follow one convention: TOKEN-CENTRE-SEQUENCE, for example REC-1-0001 (patient, centre 1, sequence 1) or LBR-1-0006 (lab result); study-wide catalogue entries such as lab tests are not centre-qualified and use TOKEN-SEQUENCE, for example LBT-0001. Identifiers carry no clinical meaning.\">ProtectChildId</a>/MIC-2-0001</p><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs microbiology-panel}\">Microbiology studies panel</span></p><p><b>subject</b>: <a href=\"Patient-KidneyRecipient1.html\">Anonymous Patient Male, DoB Unknown ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id#ProtectChildId#REC-2-0001)</a></p><p><b>encounter</b>: <a href=\"Encounter-KidneyVisitRejection1.html\">Encounter: identifier = https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id#ProtectChildId#VIS-2-0003; status = finished; class = ambulatory (ActCode#AMB); type = Clinical Event visit; period = 2024-06-20 --&gt; 2024-06-20</a></p><p><b>effective</b>: 2024-06-20</p><p><b>performer</b>: <a href=\"Organization-PCCenter2Padova.html\">Organization University of Padova</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs blood-bkv-dna}\">Blood BKV-DNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs blood-bkv-dna-copies}\">Blood BKV-DNA copies/ml</span></p><p><b>value</b>: 42000 copies/mL<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  code{copies}/mL = '{copies}/mL')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs urine-bkv-dna}\">Urine BKV-DNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs bkv-dna-kidney-biopsy}\">BKV-DNA on kidney biopsy</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs bkv-fish-kidney-biopsy}\">BKV FISH on kidney biopsy</span></p><p><b>value</b>: true</p></blockquote></div>"
  },
  "extension" : [{
    "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/transplant-type-ext",
    "valueCodeableConcept" : {
      "coding" : [{
        "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/transplant-type-cs",
        "code" : "kidney",
        "display" : "Kidney transplant"
      }]
    }
  }],
  "identifier" : [{
    "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id",
    "value" : "MIC-2-0001"
  }],
  "status" : "final",
  "code" : {
    "coding" : [{
      "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
      "code" : "microbiology-panel",
      "display" : "Microbiology studies panel"
    }]
  },
  "subject" : {
    "reference" : "Patient/KidneyRecipient1"
  },
  "encounter" : {
    "reference" : "Encounter/KidneyVisitRejection1"
  },
  "effectiveDateTime" : "2024-06-20",
  "performer" : [{
    "reference" : "Organization/PCCenter2Padova"
  }],
  "component" : [{
    "code" : {
      "coding" : [{
        "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
        "code" : "blood-bkv-dna"
      }]
    },
    "valueBoolean" : true
  },
  {
    "code" : {
      "coding" : [{
        "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
        "code" : "blood-bkv-dna-copies"
      }]
    },
    "valueQuantity" : {
      "value" : 42000,
      "unit" : "copies/mL",
      "system" : "http://unitsofmeasure.org",
      "code" : "{copies}/mL"
    }
  },
  {
    "code" : {
      "coding" : [{
        "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
        "code" : "urine-bkv-dna"
      }]
    },
    "valueBoolean" : true
  },
  {
    "code" : {
      "coding" : [{
        "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
        "code" : "bkv-dna-kidney-biopsy"
      }]
    },
    "valueBoolean" : true
  },
  {
    "code" : {
      "coding" : [{
        "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
        "code" : "bkv-fish-kidney-biopsy"
      }]
    },
    "valueBoolean" : true
  }]
}