@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/DiagnosticReport/microbiology-example-1> a fhir:DiagnosticReport ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "microbiology-example-1"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-report" ;
       fhir:index 0 ;
       fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-report>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: DiagnosticReport microbiology-example-1</b></p><a name=\"microbiology-example-1\"> </a><a name=\"hcmicrobiology-example-1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-microbiology-report.html\">Microbiology Report</a></p></div><h2><span title=\"Codes:{http://loinc.org 18725-2}\">Microbiology studies (set)</span> (<span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 MB}\">Microbiology</span>) </h2><table class=\"grid\"><tr><td>Subject</td><td>Anonymous Patient Female, DoB: 2014-08 ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id#ProtectChildId#REC-1-0001)</td></tr><tr><td>Relevant Time</td><td>2023-09-15</td></tr><tr><td>Performer</td><td> <a href=\"Organization-PCCenter1LaPaz.html\">Organization La Paz University Hospital</a></td></tr><tr><td>Identifier</td><td> <a href=\"NamingSystem-NsProtectChildId.html\" title=\"Single identifier namespace for PROTECT-CHILD record business identifiers (patient, donor, visit, transplant, and all per-visit clinical/lab/medication/specimen/event records). The resource type distinguishes the kind of record. Identifiers follow one convention: TOKEN-CENTRE-SEQUENCE, for example REC-1-0001 (patient, centre 1, sequence 1) or LBR-1-0006 (lab result); study-wide catalogue entries such as lab tests are not centre-qualified and use TOKEN-SEQUENCE, for example LBT-0001. Identifiers carry no clinical meaning.\">ProtectChildId</a>/MIC-1-0001</td></tr></table><p><b>Report Details</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td></tr><tr><td><a href=\"Observation-MicroEbvLoad1.html\"><span title=\"Codes:{http://loinc.org 36923-1}\">Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection</span></a></td><td>2450 copies/mL<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  code{copies}/mL = '{copies}/mL')</span></td><td>Final, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation DET}\">Detected</span></td></tr><tr><td><a href=\"Observation-MicroEbvVcaIgm1.html\"><span title=\"Codes:{http://loinc.org 30340-4}\">Epstein Barr virus capsid IgM Ab [Presence] in Serum</span></a></td><td><span title=\"Codes:{http://loinc.org LA6577-6}\">Negative</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroEbvVcaIgg1.html\"><span title=\"Codes:{http://loinc.org 30339-6}\">Epstein Barr virus capsid IgG Ab [Presence] in Serum</span></a></td><td><span title=\"Codes:{http://loinc.org LA6576-8}\">Positive</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroEbnaIgg1.html\"><span title=\"Codes:{http://loinc.org 7883-2}\">Epstein Barr virus nuclear IgG Ab [Presence] in Serum</span></a></td><td><span title=\"Codes:{http://loinc.org LA6576-8}\">Positive</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroEbvEaIgm1.html\"><span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs ebv-ea-igm}\">EBV early antigen IgM Ab [Presence] in Serum</span></a></td><td><span title=\"Codes:{http://loinc.org LA6577-6}\">Negative</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroCmvDna1.html\"><span title=\"Codes:{http://loinc.org 4996-5}\">Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection</span></a></td><td><span title=\"Codes:{http://loinc.org LA11883-8}\">Not detected</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroCmvIgm1.html\"><span title=\"Codes:{http://loinc.org 30325-5}\">Cytomegalovirus IgM Ab [Presence] in Serum or Plasma</span></a></td><td><span title=\"Codes:{http://loinc.org LA6577-6}\">Negative</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroCmvIgg1.html\"><span title=\"Codes:{http://loinc.org 13949-3}\">Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay</span></a></td><td><span title=\"Codes:{http://loinc.org LA6576-8}\">Positive</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroBkvBlood1.html\"><span title=\"Codes:{http://loinc.org 63475-8}\">BK virus DNA [Presence] in Blood</span></a></td><td><span title=\"Codes:{http://loinc.org LA11883-8}\">Not detected</span></td><td>Final</td></tr><tr><td><a href=\"Observation-MicroBkvUrine1.html\"><span title=\"Codes:{http://loinc.org 33978-8}\">BK virus DNA [Presence] in Urine by NAA with probe detection</span></a></td><td><span title=\"Codes:{http://loinc.org LA11883-8}\">Not detected</span></td><td>Final</td></tr></table></div>"
  ] ;
  fhir:DiagnosticReport.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id" ] ;
     fhir:Identifier.value [ fhir:value "MIC-1-0001" ]
  ] ;
  fhir:DiagnosticReport.status [ fhir:value "final"] ;
  fhir:DiagnosticReport.category [
     fhir:index 0 ;
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0074" ] ;
       fhir:Coding.code [ fhir:value "MB" ] ;
       fhir:Coding.display [ fhir:value "Microbiology" ]
     ]
  ] ;
  fhir:DiagnosticReport.code [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a loinc:18725-2 ;
       fhir:Coding.system [ fhir:value "http://loinc.org" ] ;
       fhir:Coding.code [ fhir:value "18725-2" ] ;
       fhir:Coding.display [ fhir:value "Microbiology studies (set)" ]
     ]
  ] ;
  fhir:DiagnosticReport.subject [
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Patient/ExamplePatientTransplant1> ;
     fhir:Reference.reference [ fhir:value "Patient/ExamplePatientTransplant1" ]
  ] ;
  fhir:DiagnosticReport.encounter [
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Encounter/VisitExample1> ;
     fhir:Reference.reference [ fhir:value "Encounter/VisitExample1" ]
  ] ;
  fhir:DiagnosticReport.effectiveDateTime [ fhir:value "2023-09-15"^^xsd:date] ;
  fhir:DiagnosticReport.performer [
     fhir:index 0 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Organization/PCCenter1LaPaz> ;
     fhir:Reference.reference [ fhir:value "Organization/PCCenter1LaPaz" ]
  ] ;
  fhir:DiagnosticReport.result [
     fhir:index 0 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroEbvLoad1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroEbvLoad1" ]
  ], [
     fhir:index 1 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroEbvVcaIgm1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroEbvVcaIgm1" ]
  ], [
     fhir:index 2 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroEbvVcaIgg1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroEbvVcaIgg1" ]
  ], [
     fhir:index 3 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroEbnaIgg1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroEbnaIgg1" ]
  ], [
     fhir:index 4 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroEbvEaIgm1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroEbvEaIgm1" ]
  ], [
     fhir:index 5 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroCmvDna1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroCmvDna1" ]
  ], [
     fhir:index 6 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroCmvIgm1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroCmvIgm1" ]
  ], [
     fhir:index 7 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroCmvIgg1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroCmvIgg1" ]
  ], [
     fhir:index 8 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroBkvBlood1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroBkvBlood1" ]
  ], [
     fhir:index 9 ;
     fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/Observation/MicroBkvUrine1> ;
     fhir:Reference.reference [ fhir:value "Observation/MicroBkvUrine1" ]
  ] .

# - ontology header ------------------------------------------------------------

<https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/DiagnosticReport/microbiology-example-1.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl .

# -------------------------------------------------------------------------------------