{
  "resourceType" : "ConceptMap",
  "id" : "dm-microbiology-to-omop",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-microbiology-to-omop</b></p><a name=\"dm-microbiology-to-omop\"> </a><a name=\"hcdm-microbiology-to-omop\"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\">OHDSI Standardized Vocabularies</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-dm-variable-cs.html\" title=\"https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs\">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\" title=\"https://fhir-terminology.ohdsi.org\">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.ebv_dna</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.ebv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3012570</td><td style=\"border-left-width: 0px\">Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.ebv_dna_copies</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.ebv_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3037329</td><td style=\"border-left-width: 0px\">Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8799</td><td style=\"border-left-width: 0px\">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.ebv_igm_anti_ea</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.ebv_igm_anti_ea</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3033477</td><td style=\"border-left-width: 0px\">Epstein Barr virus early Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.ebv_igm_anti_vca</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.ebv_igm_anti_vca</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3012732</td><td style=\"border-left-width: 0px\">Epstein Barr virus nuclear IgM Ab [Presence] in Serum **(correction needed: this is EBNA IgM, LOINC 7884-0; the variable is VCA IgM, LOINC 30340-4)**</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.ebv_igg_anti_vca</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.ebv_igg_anti_vca</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3006585</td><td style=\"border-left-width: 0px\">Epstein Barr virus capsid IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.ebv_igg_ebna</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.ebv_igg_ebna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3021849</td><td style=\"border-left-width: 0px\">Epstein Barr virus nuclear IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.cmv_dna</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.cmv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3021884</td><td style=\"border-left-width: 0px\">Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.cmv_dna_copies</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.cmv_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3024974</td><td style=\"border-left-width: 0px\">Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8799</td><td style=\"border-left-width: 0px\">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.cmv_igm</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.cmv_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3013332</td><td style=\"border-left-width: 0px\">Cytomegalovirus IgM Ab [Presence] in Serum or Plasma</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.cmv_igg</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.cmv_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3012887</td><td style=\"border-left-width: 0px\">Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_dna</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3032435</td><td style=\"border-left-width: 0px\">Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_dna_copies</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3032993</td><td style=\"border-left-width: 0px\">Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8799</td><td style=\"border-left-width: 0px\">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_igg</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3006410</td><td style=\"border-left-width: 0px\">Parvovirus B19 IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_igm</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.parvovirus_b19_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3008321</td><td style=\"border-left-width: 0px\">Parvovirus B19 IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.hsv_igg</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.hsv_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3020134</td><td style=\"border-left-width: 0px\">Herpes simplex virus IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45880296</td><td style=\"border-left-width: 0px\">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45877985</td><td style=\"border-left-width: 0px\">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.hsv_igm</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.hsv_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3010761</td><td style=\"border-left-width: 0px\">Herpes simplex virus IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.adenovirus_igg</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.adenovirus_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3040947</td><td style=\"border-left-width: 0px\">Adenovirus IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.adenovirus_igm</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.adenovirus_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3036242</td><td style=\"border-left-width: 0px\">Adenovirus IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.blood_adenovirus_dna</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.blood_adenovirus_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">36203755</td><td style=\"border-left-width: 0px\">Adenovirus DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.blood_adenovirus_dna_copies</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.blood_adenovirus_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3028979</td><td style=\"border-left-width: 0px\">Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8799</td><td style=\"border-left-width: 0px\">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.vzv_igg</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.vzv_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3022386</td><td style=\"border-left-width: 0px\">Varicella zoster virus IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.vzv_igm</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.vzv_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3016065</td><td style=\"border-left-width: 0px\">Varicella zoster virus IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.blood_bkv_dna</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.blood_bkv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">40766205</td><td style=\"border-left-width: 0px\">BK virus DNA [Presence] in Blood</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45878583</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45884084</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.blood_bkv_dna_copies</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.blood_bkv_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3029226</td><td style=\"border-left-width: 0px\">BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8799</td><td style=\"border-left-width: 0px\">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.urine_bkv_dna</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.urine_bkv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3029173</td><td style=\"border-left-width: 0px\">BK virus DNA [Presence] in Urine by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45880296</td><td style=\"border-left-width: 0px\">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45877985</td><td style=\"border-left-width: 0px\">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.bkv_dna_kidney_biopsy</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.bkv_dna_kidney_biopsy</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">1091792</td><td style=\"border-left-width: 0px\">BK virus DNA [Presence] in Specimen</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45880296</td><td style=\"border-left-width: 0px\">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45877985</td><td style=\"border-left-width: 0px\">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.bkv_fish_kidney_biopsy</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.bkv_fish_kidney_biopsy</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">1091792</td><td style=\"border-left-width: 0px\">BK virus DNA [Presence] in Specimen</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45880296</td><td style=\"border-left-width: 0px\">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">45877985</td><td style=\"border-left-width: 0px\">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">1073315</td><td style=\"border-left-width: 0px\">Fluorescence in situ hybridization technique</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.blood_colture</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.blood_colture</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">4107893</td><td style=\"border-left-width: 0px\">Blood culture</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9189</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9191</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">microbiology.urine_colture</td><td style=\"border-left-width: 0px; border-bottom-style: none\">microbiology.urine_colture</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">4024509</td><td style=\"border-left-width: 0px\">Urine culture</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9189</td><td style=\"border-left-width: 0px\">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9191</td><td style=\"border-left-width: 0px\">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">microbiology.ebv_hepatitis_liver</td><td style=\"border-left-width: 0px\">microbiology.ebv_hepatitis_liver</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">4119142</td><td style=\"border-left-width: 0px\">Epstein-Barr virus hepatitis</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">microbiology.evidence_bkvan</td><td style=\"border-left-width: 0px\">microbiology.evidence_bkvan</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">37017585</td><td style=\"border-left-width: 0px\">BK virus nephropathy</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr></table></div>"
  },
  "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-microbiology-to-omop",
  "version" : "0.1.0-ci-build",
  "name" : "DmMicrobiologyToOmop",
  "title" : "DM microbiology → OMOP",
  "status" : "draft",
  "experimental" : false,
  "date" : "2026-09-28T06:51:47+00:00",
  "publisher" : "Protect Child",
  "contact" : [{
    "name" : "Protect Child",
    "telecom" : [{
      "system" : "url",
      "value" : "https://protect-child.eu/"
    }]
  }],
  "description" : "The OMOP concepts for each column of the DMv1.2 microbiology table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
  "group" : [{
    "source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
    "target" : "https://fhir-terminology.ohdsi.org",
    "element" : [{
      "code" : "microbiology.ebv_dna",
      "target" : [{
        "code" : "3012570",
        "display" : "Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.ebv_dna_copies",
      "target" : [{
        "code" : "3037329",
        "display" : "Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "8799",
        "display" : "copies per milliliter",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
      }]
    },
    {
      "code" : "microbiology.ebv_igm_anti_ea",
      "target" : [{
        "code" : "3033477",
        "display" : "Epstein Barr virus early Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.ebv_igm_anti_vca",
      "target" : [{
        "code" : "3012732",
        "display" : "Epstein Barr virus nuclear IgM Ab [Presence] in Serum **(correction needed: this is EBNA IgM, LOINC 7884-0; the variable is VCA IgM, LOINC 30340-4)**",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.ebv_igg_anti_vca",
      "target" : [{
        "code" : "3006585",
        "display" : "Epstein Barr virus capsid IgG Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.ebv_igg_ebna",
      "target" : [{
        "code" : "3021849",
        "display" : "Epstein Barr virus nuclear IgG Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.cmv_dna",
      "target" : [{
        "code" : "3021884",
        "display" : "Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.cmv_dna_copies",
      "target" : [{
        "code" : "3024974",
        "display" : "Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "8799",
        "display" : "copies per milliliter",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
      }]
    },
    {
      "code" : "microbiology.cmv_igm",
      "target" : [{
        "code" : "3013332",
        "display" : "Cytomegalovirus IgM Ab [Presence] in Serum or Plasma",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.cmv_igg",
      "target" : [{
        "code" : "3012887",
        "display" : "Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.parvovirus_b19_dna",
      "target" : [{
        "code" : "3032435",
        "display" : "Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.parvovirus_b19_dna_copies",
      "target" : [{
        "code" : "3032993",
        "display" : "Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "8799",
        "display" : "copies per milliliter",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
      }]
    },
    {
      "code" : "microbiology.parvovirus_b19_igg",
      "target" : [{
        "code" : "3006410",
        "display" : "Parvovirus B19 IgG Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.parvovirus_b19_igm",
      "target" : [{
        "code" : "3008321",
        "display" : "Parvovirus B19 IgM Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.hsv_igg",
      "target" : [{
        "code" : "3020134",
        "display" : "Herpes simplex virus IgG Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45880296",
        "display" : "Not detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45877985",
        "display" : "Detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.hsv_igm",
      "target" : [{
        "code" : "3010761",
        "display" : "Herpes simplex virus IgM Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.adenovirus_igg",
      "target" : [{
        "code" : "3040947",
        "display" : "Adenovirus IgG Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.adenovirus_igm",
      "target" : [{
        "code" : "3036242",
        "display" : "Adenovirus IgM Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.blood_adenovirus_dna",
      "target" : [{
        "code" : "36203755",
        "display" : "Adenovirus DNA [Presence] in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.blood_adenovirus_dna_copies",
      "target" : [{
        "code" : "3028979",
        "display" : "Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "8799",
        "display" : "copies per milliliter",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
      }]
    },
    {
      "code" : "microbiology.vzv_igg",
      "target" : [{
        "code" : "3022386",
        "display" : "Varicella zoster virus IgG Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.vzv_igm",
      "target" : [{
        "code" : "3016065",
        "display" : "Varicella zoster virus IgM Ab [Presence] in Serum",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.blood_bkv_dna",
      "target" : [{
        "code" : "40766205",
        "display" : "BK virus DNA [Presence] in Blood",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45878583",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45884084",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.blood_bkv_dna_copies",
      "target" : [{
        "code" : "3029226",
        "display" : "BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "8799",
        "display" : "copies per milliliter",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
      }]
    },
    {
      "code" : "microbiology.urine_bkv_dna",
      "target" : [{
        "code" : "3029173",
        "display" : "BK virus DNA [Presence] in Urine by NAA with probe detection",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45880296",
        "display" : "Not detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45877985",
        "display" : "Detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.bkv_dna_kidney_biopsy",
      "target" : [{
        "code" : "1091792",
        "display" : "BK virus DNA [Presence] in Specimen",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45880296",
        "display" : "Not detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45877985",
        "display" : "Detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      }]
    },
    {
      "code" : "microbiology.bkv_fish_kidney_biopsy",
      "target" : [{
        "code" : "1091792",
        "display" : "BK virus DNA [Presence] in Specimen",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45880296",
        "display" : "Not detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "45877985",
        "display" : "Detected",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
      },
      {
        "code" : "1073315",
        "display" : "Fluorescence in situ hybridization technique",
        "equivalence" : "equivalent",
        "comment" : "OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED."
      }]
    },
    {
      "code" : "microbiology.blood_colture",
      "target" : [{
        "code" : "4107893",
        "display" : "Blood culture",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
      },
      {
        "code" : "9189",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."
      },
      {
        "code" : "9191",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."
      }]
    },
    {
      "code" : "microbiology.urine_colture",
      "target" : [{
        "code" : "4024509",
        "display" : "Urine culture",
        "equivalence" : "equivalent",
        "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
      },
      {
        "code" : "9189",
        "display" : "Negative",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."
      },
      {
        "code" : "9191",
        "display" : "Positive",
        "equivalence" : "relatedto",
        "comment" : "OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."
      }]
    },
    {
      "code" : "microbiology.ebv_hepatitis_liver",
      "target" : [{
        "code" : "4119142",
        "display" : "Epstein-Barr virus hepatitis",
        "equivalence" : "equivalent",
        "comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
      }]
    },
    {
      "code" : "microbiology.evidence_bkvan",
      "target" : [{
        "code" : "37017585",
        "display" : "BK virus nephropathy",
        "equivalence" : "equivalent",
        "comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
      }]
    }]
  }]
}