FLUTE Cross-border Prostate Cancer Data Standard Guide
0.1.0 - ci-build
FLUTE Cross-border Prostate Cancer Data Standard Guide
0.1.0 - ci-build
FLUTE Cross-border Prostate Cancer Data Standard Guide, published by Flute Project. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/flute/ and changes regularly. See the Directory of published versions
| Draft as of 2024-09-25 |
{
"resourceType" : "TestScript",
"id" : "TS-Flute-02",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: TestScript TS-Flute-02</b></p><a name=\"TS-Flute-02\"> </a><a name=\"hcTS-Flute-02\"> </a><a name=\"TS-Flute-02-en-US\"> </a><p><b>url</b>: <a href=\"TestScript-TS-Flute-02.html\">TestScript Study Inclusion Criteria - Scenario 02</a></p><p><b>version</b>: 0.1.0</p><p><b>name</b>: PcaInclusionCriteriaS02</p><p><b>title</b>: Study Inclusion Criteria - Scenario 02</p><p><b>status</b>: Draft</p><p><b>experimental</b>: true</p><p><b>date</b>: 2024-09-25 16:08:44+0000</p><p><b>publisher</b>: Flute Project</p><p><b>contact</b>: Flute Project: <a href=\"https://www.fluteproject.eu/\">https://www.fluteproject.eu/</a>, Flute Project: <a href=\"https://www.fluteproject.eu/\">https://www.fluteproject.eu/</a></p><p><b>description</b>: </p><div><p>This TestScript evaluates the inclusion criteria for patients participating in the study.</p>\n</div><p><b>purpose</b>: </p><div><p>To verify that the CQL library correctly identifies patients who meet the inclusion criteria for the study.</p>\n</div><h3>Origins</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Index</b></td><td><b>Profile</b></td></tr><tr><td style=\"display: none\">*</td><td>1</td><td><a href=\"http://terminology.hl7.org/6.0.2/CodeSystem-testscript-profile-origin-types.html#testscript-profile-origin-types-FHIR-Client\">Test script profile origin type</a> FHIR-Client: FHIR Client</td></tr></table><h3>Destinations</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Index</b></td><td><b>Profile</b></td></tr><tr><td style=\"display: none\">*</td><td>1</td><td><a href=\"http://terminology.hl7.org/6.0.2/CodeSystem-testscript-profile-destination-types.html#testscript-profile-destination-types-FHIR-Server\">Test script profile destination type</a> FHIR-Server: FHIR Server</td></tr></table><blockquote><p><b>fixture</b></p><blockquote><p><b>id</b></p>fixture-transaction-request</blockquote><p><b>autocreate</b>: false</p><p><b>autodelete</b>: false</p><p><b>resource</b>: <a href=\"DocumentReference/EXP-S2-ExcludedPatient\">DocumentReference/EXP-S2-ExcludedPatient</a></p></blockquote><blockquote><p><b>fixture</b></p><blockquote><p><b>id</b></p>fixture-transaction-teardown</blockquote><p><b>autocreate</b>: false</p><p><b>autodelete</b>: false</p><p><b>resource</b>: <a href=\"DocumentReference/EXP-Teardown\">DocumentReference/EXP-Teardown</a></p></blockquote><blockquote><p><b>fixture</b></p><blockquote><p><b>id</b></p>fixture-valueset-create</blockquote><p><b>autocreate</b>: false</p><p><b>autodelete</b>: false</p><p><b>resource</b>: <a href=\"DocumentReference/VS-PCa\">DocumentReference/VS-PCa</a></p></blockquote><blockquote><p><b>fixture</b></p><blockquote><p><b>id</b></p>fixture-library-create</blockquote><p><b>autocreate</b>: false</p><p><b>autodelete</b>: false</p><p><b>resource</b>: <a href=\"DocumentReference/PcaInclusionCriteria\">DocumentReference/PcaInclusionCriteria</a></p></blockquote><blockquote><p><b>variable</b></p><blockquote><p><b>id</b></p>patientId</blockquote><p><b>name</b>: patientId</p><p><b>expression</b>: Bundle.entry[0].response.location</p><p><b>sourceId</b>: fixture-transaction-response</p></blockquote><blockquote><p><b>variable</b></p><blockquote><p><b>id</b></p>obsPIRADSId</blockquote><p><b>name</b>: obsPIRADSId</p><p><b>expression</b>: Bundle.entry[6].response.location</p><p><b>sourceId</b>: fixture-transaction-response</p></blockquote><blockquote><p><b>variable</b></p><blockquote><p><b>id</b></p>obsPVId</blockquote><p><b>name</b>: obsPVId</p><p><b>expression</b>: Bundle.entry[5].response.location</p><p><b>sourceId</b>: fixture-transaction-response</p></blockquote><blockquote><p><b>variable</b></p><blockquote><p><b>id</b></p>proDREId</blockquote><p><b>name</b>: proDREId</p><p><b>expression</b>: Bundle.entry[4].response.location</p><p><b>sourceId</b>: fixture-transaction-response</p></blockquote><blockquote><p><b>variable</b></p><blockquote><p><b>id</b></p>obsPSAId</blockquote><p><b>name</b>: obsPSAId</p><p><b>expression</b>: Bundle.entry[3].response.location</p><p><b>sourceId</b>: fixture-transaction-response</p></blockquote><blockquote><p><b>variable</b></p><blockquote><p><b>id</b></p>famPCId</blockquote><p><b>name</b>: famPCId</p><p><b>expression</b>: Bundle.entry[2].response.location</p><p><b>sourceId</b>: fixture-transaction-response</p></blockquote><blockquote><p><b>variable</b></p><blockquote><p><b>id</b></p>proBiopsyId</blockquote><p><b>name</b>: proBiopsyId</p><p><b>expression</b>: Bundle.entry[1].response.location</p><p><b>sourceId</b>: fixture-transaction-response</p></blockquote><blockquote><p><b>setup</b></p><blockquote><p><b>action</b></p><blockquote><p><b>operation</b></p><blockquote><p><b>id</b></p>SET-01</blockquote><p><b>type</b>: <a href=\"http://hl7.org/fhir/R4/codesystem-restful-interaction.html#restful-interaction-transaction\">FHIR Restful Interactions</a> transaction: transaction</p><p><b>resource</b>: Bundle</p><p><b>description</b>: Sent a transaction request on the test server using the id from fixture-transaction-request.</p><p><b>accept</b>: application/fhir+json</p><p><b>contentType</b>: application/fhir+json</p><p><b>encodeRequestUrl</b>: false</p><p><b>method</b>: POST</p><p><b>responseId</b>: fixture-transaction-response</p><p><b>sourceId</b>: fixture-transaction-request</p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>assert</b></p><blockquote><p><b>id</b></p>SET-01-ASS-01</blockquote><p><b>label</b>: HTTPStatus</p><p><b>description</b>: Confirm that the returned HTTP status is 200.</p><p><b>direction</b>: response</p><p><b>responseCode</b>: 200</p><p><b>warningOnly</b>: false</p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>operation</b></p><blockquote><p><b>id</b></p>SET-02</blockquote><p><b>type</b>: <a href=\"http://hl7.org/fhir/R4/codesystem-restful-interaction.html#restful-interaction-update\">FHIR Restful Interactions</a> update: update</p><p><b>resource</b>: ValueSet</p><p><b>description</b>: Create the ValueSet resource on the test server using the id from fixture-valueset-create.</p><p><b>accept</b>: application/fhir+json</p><p><b>contentType</b>: application/fhir+json</p><p><b>encodeRequestUrl</b>: false</p><p><b>method</b>: PUT</p><p><b>sourceId</b>: fixture-valueset-create</p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>assert</b></p><blockquote><p><b>id</b></p>SET-02-ASS-01</blockquote><p><b>label</b>: HTTPStatus</p><p><b>description</b>: Confirm that the returned HTTP status is 201.</p><p><b>direction</b>: response</p><p><b>responseCode</b>: 201</p><p><b>warningOnly</b>: false</p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>operation</b></p><blockquote><p><b>id</b></p>SET-03</blockquote><p><b>type</b>: <a href=\"http://hl7.org/fhir/R4/codesystem-restful-interaction.html#restful-interaction-update\">FHIR Restful Interactions</a> update: update</p><p><b>resource</b>: Library</p><p><b>description</b>: Create the Library resource on the test server using the id from fixture-library-create.</p><p><b>accept</b>: application/fhir+json</p><p><b>contentType</b>: application/fhir+json</p><p><b>encodeRequestUrl</b>: false</p><p><b>method</b>: PUT</p><p><b>sourceId</b>: fixture-library-create</p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>assert</b></p><blockquote><p><b>id</b></p>SET-03-ASS-01</blockquote><p><b>label</b>: HTTPStatus</p><p><b>description</b>: Confirm that the returned HTTP status is 201.</p><p><b>direction</b>: response</p><p><b>responseCode</b>: 201</p><p><b>warningOnly</b>: false</p></blockquote></blockquote></blockquote><blockquote><p><b>test</b></p><blockquote><p><b>id</b></p>1-EvaluateLibrary</blockquote><p><b>name</b>: Evaluation of CQL Library for Prostate Cancer Inclusion</p><p><b>description</b>: This test evaluates the inclusion criteria defined in the CQL library for a prostate cancer study.</p><blockquote><p><b>action</b></p><blockquote><p><b>operation</b></p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>assert</b></p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>assert</b></p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>assert</b></p></blockquote></blockquote></blockquote><blockquote><p><b>teardown</b></p><blockquote><p><b>action</b></p><blockquote><p><b>operation</b></p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>operation</b></p></blockquote></blockquote><blockquote><p><b>action</b></p><blockquote><p><b>operation</b></p></blockquote></blockquote></blockquote></div>"
},
"url" : "http://hl7.eu/fhir/ig/flute/TestScript/TS-Flute-02",
"version" : "0.1.0",
"name" : "PcaInclusionCriteriaS02",
"title" : "Study Inclusion Criteria - Scenario 02",
"status" : "draft",
"experimental" : true,
"date" : "2024-09-25T16:08:44+00:00",
"publisher" : "Flute Project",
"contact" : [
{
"name" : "Flute Project",
"telecom" : [
{
"system" : "url",
"value" : "https://www.fluteproject.eu/"
}
]
},
{
"name" : "Flute Project",
"telecom" : [
{
"system" : "url",
"value" : "https://www.fluteproject.eu/"
}
]
}
],
"description" : "This TestScript evaluates the inclusion criteria for patients participating in the study.",
"purpose" : "To verify that the CQL library correctly identifies patients who meet the inclusion criteria for the study.",
"origin" : [
{
"index" : 1,
"profile" : {
"system" : "http://terminology.hl7.org/CodeSystem/testscript-profile-origin-types",
"code" : "FHIR-Client"
}
}
],
"destination" : [
{
"index" : 1,
"profile" : {
"system" : "http://terminology.hl7.org/CodeSystem/testscript-profile-destination-types",
"code" : "FHIR-Server"
}
}
],
"fixture" : [
{
"id" : "fixture-transaction-request",
"autocreate" : false,
"autodelete" : false,
"resource" : {
"reference" : "DocumentReference/EXP-S2-ExcludedPatient"
}
},
{
"id" : "fixture-transaction-teardown",
"autocreate" : false,
"autodelete" : false,
"resource" : {
"reference" : "DocumentReference/EXP-Teardown"
}
},
{
"id" : "fixture-valueset-create",
"autocreate" : false,
"autodelete" : false,
"resource" : {
"reference" : "DocumentReference/VS-PCa"
}
},
{
"id" : "fixture-library-create",
"autocreate" : false,
"autodelete" : false,
"resource" : {
"reference" : "DocumentReference/PcaInclusionCriteria"
}
}
],
"variable" : [
{
"id" : "patientId",
"name" : "patientId",
"expression" : "Bundle.entry[0].response.location",
"sourceId" : "fixture-transaction-response"
},
{
"id" : "obsPIRADSId",
"name" : "obsPIRADSId",
"expression" : "Bundle.entry[6].response.location",
"sourceId" : "fixture-transaction-response"
},
{
"id" : "obsPVId",
"name" : "obsPVId",
"expression" : "Bundle.entry[5].response.location",
"sourceId" : "fixture-transaction-response"
},
{
"id" : "proDREId",
"name" : "proDREId",
"expression" : "Bundle.entry[4].response.location",
"sourceId" : "fixture-transaction-response"
},
{
"id" : "obsPSAId",
"name" : "obsPSAId",
"expression" : "Bundle.entry[3].response.location",
"sourceId" : "fixture-transaction-response"
},
{
"id" : "famPCId",
"name" : "famPCId",
"expression" : "Bundle.entry[2].response.location",
"sourceId" : "fixture-transaction-response"
},
{
"id" : "proBiopsyId",
"name" : "proBiopsyId",
"expression" : "Bundle.entry[1].response.location",
"sourceId" : "fixture-transaction-response"
}
],
"setup" : {
"action" : [
{
"operation" : {
"id" : "SET-01",
"type" : {
"system" : "http://hl7.org/fhir/restful-interaction",
"code" : "transaction"
},
"resource" : "Bundle",
"description" : "Sent a transaction request on the test server using the id from fixture-transaction-request.",
"accept" : "application/fhir+json",
"contentType" : "application/fhir+json",
"encodeRequestUrl" : false,
"method" : "post",
"responseId" : "fixture-transaction-response",
"sourceId" : "fixture-transaction-request"
}
},
{
"assert" : {
"id" : "SET-01-ASS-01",
"label" : "HTTPStatus",
"description" : "Confirm that the returned HTTP status is 200.",
"direction" : "response",
"responseCode" : "200",
"warningOnly" : false
}
},
{
"operation" : {
"id" : "SET-02",
"type" : {
"system" : "http://hl7.org/fhir/restful-interaction",
"code" : "update"
},
"resource" : "ValueSet",
"description" : "Create the ValueSet resource on the test server using the id from fixture-valueset-create.",
"accept" : "application/fhir+json",
"contentType" : "application/fhir+json",
"encodeRequestUrl" : false,
"method" : "put",
"sourceId" : "fixture-valueset-create"
}
},
{
"assert" : {
"id" : "SET-02-ASS-01",
"label" : "HTTPStatus",
"description" : "Confirm that the returned HTTP status is 201.",
"direction" : "response",
"responseCode" : "201",
"warningOnly" : false
}
},
{
"operation" : {
"id" : "SET-03",
"type" : {
"system" : "http://hl7.org/fhir/restful-interaction",
"code" : "update"
},
"resource" : "Library",
"description" : "Create the Library resource on the test server using the id from fixture-library-create.",
"accept" : "application/fhir+json",
"contentType" : "application/fhir+json",
"encodeRequestUrl" : false,
"method" : "put",
"sourceId" : "fixture-library-create"
}
},
{
"assert" : {
"id" : "SET-03-ASS-01",
"label" : "HTTPStatus",
"description" : "Confirm that the returned HTTP status is 201.",
"direction" : "response",
"responseCode" : "201",
"warningOnly" : false
}
}
]
},
"test" : [
{
"id" : "1-EvaluateLibrary",
"name" : "Evaluation of CQL Library for Prostate Cancer Inclusion",
"description" : "This test evaluates the inclusion criteria defined in the CQL library for a prostate cancer study.",
"action" : [
{
"operation" : {
"id" : "TES-01",
"extension" : [
{
"url" : "http://fyrstain.com/pdt/returnResourceType",
"valueString" : "Parameters"
}
],
"type" : {
"system" : "http://hl7.org/fhir/restful-interaction",
"code" : "operation"
},
"resource" : "Library",
"description" : "Evaluate the CQL library to check if the patient meets the inclusion criteria.",
"contentType" : "application/fhir+json",
"encodeRequestUrl" : false,
"method" : "get",
"params" : "$evaluate?subject={{patientId}}",
"targetId" : "fixture-library-create"
}
},
{
"assert" : {
"id" : "TES-01-ASS-01",
"label" : "HTTPStatus",
"description" : "Confirm that the returned HTTP status is 200.",
"direction" : "response",
"responseCode" : "200",
"warningOnly" : false
}
},
{
"assert" : {
"id" : "TES-01-ASS-02",
"label" : "Resource",
"description" : "Confirm that the returned resource type is Parameters.",
"direction" : "response",
"resource" : "Parameters",
"warningOnly" : false
}
},
{
"assert" : {
"id" : "TES-01-ASS-03",
"label" : "FHIRPath",
"description" : "Confirm that the returned Parameters resource contains an 'isIncluded' parameter with a value of false.",
"direction" : "response",
"expression" : "Parameters.parameter.where(name = 'isIncluded' ).value=false",
"warningOnly" : false
}
}
]
}
],
"teardown" : {
"action" : [
{
"operation" : {
"id" : "TED-01",
"type" : {
"system" : "http://hl7.org/fhir/restful-interaction",
"code" : "transaction"
},
"resource" : "Bundle",
"description" : "Delete the testing resources on the test server using the id from fixture-transaction-teardown.",
"encodeRequestUrl" : true,
"method" : "delete",
"sourceId" : "fixture-transaction-teardown"
}
},
{
"operation" : {
"id" : "TED-02",
"type" : {
"system" : "http://hl7.org/fhir/restful-interaction",
"code" : "delete"
},
"resource" : "ValueSet",
"description" : "Delete the ValueSet resource on the test server using the id from fixture-library-create.",
"encodeRequestUrl" : true,
"method" : "delete",
"targetId" : "fixture-valueset-create"
}
},
{
"operation" : {
"id" : "TED-03",
"type" : {
"system" : "http://hl7.org/fhir/restful-interaction",
"code" : "delete"
},
"resource" : "Library",
"description" : "Delete the Library resource on the test server using the id from fixture-library-create.",
"encodeRequestUrl" : true,
"method" : "delete",
"targetId" : "fixture-library-create"
}
}
]
}
}