FLUTE Cross-border Prostate Cancer Data Standard Guide, published by Flute Project. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/flute/ and changes regularly. See the Directory of published versions
One of these codes: SNOMED CT (all versions) 719178004: Multiparametric magnetic resonance imaging of prostate
Contents
text/cql
library ResearchVariables version '1.0.0'
using FHIR version '4.0.1'
include FHIRHelpers version '4.0.1' called FHIRHelpers
codesystem "LOINC": 'http://loinc.org'
codesystem "SNOMED": 'http://snomed.info/sct'
code "psA": '2857-1' from "LOINC" display 'Prostate specific Ag [Mass/volume] in Serum or Plasma'
code "drE": '410006001' from "SNOMED" display 'Digital examination of rectum'
code "susceptible": '131196009' from "SNOMED" display 'susceptible'
code "biopsy": '86273004' from "SNOMED" display 'Biopsy'
code "volumeOfProstate": '1297142007' from "SNOMED" display 'Volume of prostate'
code "mri": '719178004' from "SNOMED" display 'Multiparametric magnetic resonance imaging of prostate'
code "repeated": '27582007' from "SNOMED" display 'Repeated'
valueset "pca": 'http://hl7.eu/fhir/ig/flute/ValueSet/VS-PCa'
context Patient
define "ageAtBiopsy":
[Procedure: "biopsy"] P where P.status = 'completed'
return P.performed
define "pcaFamilyHistory":
if exists([FamilyMemberHistory] F where F.status = 'completed' and F.condition[0].code in "pca") then 1
else 0
define "typeOfBiopsy":
if exists([Procedure: "biopsy"] P where P.status = 'completed' and P.category ~ "repeated") then 2
else 0
define "psa":
[Observation:"psA"] O where O.status = 'final'
return O.value
define "dre":
if exists([Procedure: "drE"] P where P.status = 'completed' and P.outcome ~ "susceptible") then 1
else 0
define "prostateVolume":
[Observation:"volumeOfProstate"] O where O.status = 'final'
return O.value
define "pirads":
[Observation:"mri"] O where O.status = 'final'
return O.value
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