INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-eu/EHDSI-Terminology-package --branch master repo DEBUG:root:Time to deadline 35879.998137 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35849.01983 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35847.698666 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.0 npm notice Changelog: npm notice Run `npm install -g npm@11.6.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-eu/EHDSI-Terminology-package/ -out /scratch/repo DEBUG:root:Time to deadline 35841.098822 seconds FHIR IG Publisher Version 2.0.17 (Git# 98facbadd305). Built 2025-09-09T06:53:45.198Z (10 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-eu/EHDSI-Terminology-package/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, September 19, 2025, 2:01:30 PM Coordinated Universal Time (2025-09-19T14:01:30Z) Build FHIR IG from /scratch/repo (00:00.026 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.030, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.033, 97Mb) Run Sushi on /scratch/repo (00:00.004 / 00:00.037, 97Mb) Sushi: info Running SUSHI v3.16.4 (implements FHIR Shorthand specification v3.0.0) (00:00.556 / 00:00.594, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.595, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.595, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.595, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.595, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.666 / 00:01.263, 113Mb) Sushi: info Importing FSH text... (00:00.114 / 00:01.377, 113Mb) Sushi: error mismatched input 'urn:oid:1.3.6.1.4.1.12559.11.10.1.3.1.44.6ValueSet:' expecting {, KW_ALIAS, KW_PROFILE, KW_EXTENSION, KW_INSTANCE, KW_INVARIANT, KW_VALUESET, KW_CODESYSTEM, KW_RULESET, KW_MAPPING, KW_LOGICAL, KW_RESOURCE} (00:04.709 / 00:06.087, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIMedicalDevice.fsh (00:00.000 / 00:06.088, 113Mb) Sushi: Line: 1 (00:00.000 / 00:06.088, 113Mb) Sushi: error no viable alternative at input '\r\n\r\n* http://unitsofmeasure.org/%{blockade} "percent blockade"' (00:00.524 / 00:06.613, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.613, 113Mb) Sushi: Line: 12 (00:00.000 / 00:06.613, 113Mb) Sushi: error no viable alternative at input '\r\n* http://unitsofmeasure.org/{AHF'U} "American Hospital Formulary unit"' (00:00.000 / 00:06.614, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.614, 113Mb) Sushi: Line: 24 (00:00.000 / 00:06.614, 113Mb) Sushi: error no viable alternative at input '\r\n* http://unitsofmeasure.org/{CH100'U} "complement CH100 unit"' (00:00.012 / 00:06.627, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.627, 113Mb) Sushi: Line: 124 (00:00.000 / 00:06.627, 113Mb) Sushi: error no viable alternative at input '\r\n* http://unitsofmeasure.org/{CAE'U} "complement activity enzyme unit"' (00:00.005 / 00:06.633, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.634, 113Mb) Sushi: Line: 234 (00:00.000 / 00:06.634, 113Mb) Sushi: error no viable alternative at input '\r\n* http://unitsofmeasure.org/{APS'U} "IgA antiphosphatidylserine unit"' (00:00.011 / 00:06.646, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.646, 113Mb) Sushi: Line: 436 (00:00.000 / 00:06.646, 113Mb) Sushi: error no viable alternative at input '\r\n* http://unitsofmeasure.org/{absorbance} "absorbance"' (00:00.007 / 00:06.654, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.654, 113Mb) Sushi: Line: 530 (00:00.000 / 00:06.654, 113Mb) Sushi: error no viable alternative at input '\r\n* http://unitsofmeasure.org/{CPM}/10*3{cell} "counts per minute per thousand cells"' (00:00.005 / 00:06.660, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.660, 113Mb) Sushi: Line: 658 (00:00.000 / 00:06.661, 113Mb) Sushi: error no viable alternative at input '\r\n* http://unitsofmeasure.org/{CAG_repeats} "CAG trinucleotide repeats"' (00:00.004 / 00:06.665, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 00:06.665, 113Mb) Sushi: Line: 768 (00:00.000 / 00:06.666, 113Mb) Sushi: info Preprocessed 60 documents with 0 aliases. (00:00.008 / 00:06.674, 113Mb) Sushi: info Imported 59 definitions and 0 instances. (00:01.082 / 00:07.757, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.101 / 00:07.859, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.747 / 00:08.607, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.000 / 00:08.608, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.813 / 00:09.422, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:09.425, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.058 / 00:09.483, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.477 / 00:09.960, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:09.961, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.473 / 00:12.434, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:12.436, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.286 / 00:13.722, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.458 / 00:14.181, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:14.181, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.574 / 00:15.755, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:15.756, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.322 / 00:16.079, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:16.080, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.995 / 00:19.075, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:19.076, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.154 / 00:20.230, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.012 / 00:20.243, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.019 / 00:20.262, 113Mb) Sushi: info Converted 1 FHIR CodeSystems. (01:27.583 / 01:47.846, 113Mb) Sushi: warn Value set EHDSIAdverseEventType has a description field that should not be empty. (00:00.417 / 01:48.263, 113Mb) Sushi: warn Value set EHDSIDoseForm has a description field that should not be empty. (00:00.830 / 01:49.093, 113Mb) Sushi: warn Value set EHDSIHealthcareProfessionalRole has a description field that should not be empty. (00:00.095 / 01:49.188, 113Mb) Sushi: warn Value set EHDSIMedicalImagesType has a description field that should not be empty. (00:26.152 / 02:15.340, 113Mb) Sushi: warn Value set EHDSIMedicalImagingReportType has a description field that should not be empty. (00:00.045 / 02:15.386, 113Mb) Sushi: warn Value set EHDSIMicroorganism has a description field that should not be empty. (00:00.045 / 02:15.431, 113Mb) Sushi: warn Value set EHDSIPackage has a description field that should not be empty. (00:00.255 / 02:15.687, 113Mb) Sushi: warn Value set EHDSIProcedure has a description field that should not be empty. (00:00.236 / 02:15.923, 113Mb) Sushi: warn Value set EHDSIRouteofAdministration has a description field that should not be empty. (00:00.537 / 02:16.461, 113Mb) Sushi: warn Value set EHDSISubstitutionCode has a description field that should not be empty. (00:36.119 / 02:52.580, 113Mb) Sushi: warn Value set EHDSITimingEvent has a description field that should not be empty. (00:00.100 / 02:52.681, 113Mb) Sushi: warn Value set EHDSIUnit has a description field that should not be empty. (00:00.050 / 02:52.731, 113Mb) Sushi: error Resolved value "http://unitsofmeasure.org/{" is not a valid URI. (00:00.036 / 02:52.768, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/eHDSIUnit.fsh (00:00.000 / 02:52.768, 113Mb) Sushi: Line: 1 - 902 (00:00.000 / 02:52.768, 113Mb) Sushi: info Converted 58 FHIR ValueSets. (00:00.047 / 02:52.816, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 02:52.817, 113Mb) Sushi: info Exported 58 FHIR resources as JSON. (00:00.494 / 02:53.311, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 02:53.314, 113Mb) Sushi: info Generated ImplementationGuide-hl7.eu.terminology.ehdsi.json (00:00.008 / 02:53.322, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 02:53.322, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 02:53.324, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:53.324, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 02:53.324, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:53.325, 113Mb) Sushi: | | 0 | 0 | 0 | 0 | | (00:00.000 / 02:53.325, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:53.325, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:53.325, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 02:53.325, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:53.326, 113Mb) Sushi: | | 57 | 1 | 0 | | (00:00.000 / 02:53.326, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:53.326, 113Mb) Sushi: | | (00:00.000 / 02:53.326, 113Mb) Sushi: =================================================================== (00:00.000 / 02:53.326, 113Mb) Sushi: | Swim back to School of FSH 10 Errors 12 Warnings | (00:00.000 / 02:53.326, 113Mb) Sushi: =================================================================== (00:00.000 / 02:53.326, 113Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.048 / 02:53.375, 113Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 02:53.375, 113Mb) Exception: Process exited with an error: 10 (Exit value: 10) (00:00.000 / 02:53.376, 113Mb) Publishing Content Failed: Process exited with an error: 10 (Exit value: 10) (00:00.000 / 02:53.376, 113Mb) (00:00.000 / 02:53.376, 113Mb) Use -? to get command line help (00:00.000 / 02:53.376, 113Mb) (00:00.000 / 02:53.376, 113Mb) Stack Dump (for debugging): (00:00.000 / 02:53.376, 113Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 10 (Exit value: 10) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:130) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:208) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482)