INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-be/referral --branch issue-421 repo DEBUG:root:Time to deadline 35879.997314 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35781.516903 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35780.196741 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 120 packages in 5s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.2 npm notice Changelog: npm notice Run `npm install -g npm@10.9.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/referral/ -out /scratch/repo DEBUG:root:Time to deadline 35775.009602 seconds FHIR IG Publisher Version 1.7.5 (Git# 2ec44e6c46a5). Built 2024-11-22T15:37:50.312Z (12 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/referral/ -out /scratch/repo Start Clock @ Thursday, December 5, 2024, 8:02:17 AM Coordinated Universal Time (2024-12-05T08:02:17Z) Build FHIR IG from /scratch/repo (00:00.029 / 00:00.030, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.034, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.037, 89Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.043, 89Mb) Sushi: info Running SUSHI v3.12.1 (implements FHIR Shorthand specification v3.0.0) (00:00.659 / 00:00.702, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.703, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.703, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.703, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.703, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.663 / 00:01.367, 113Mb) Sushi: info Importing FSH text... (00:00.164 / 00:01.531, 113Mb) Sushi: info Preprocessed 83 documents with 33 aliases. (00:00.540 / 00:02.072, 113Mb) Sushi: info Imported 31 definitions and 51 instances. (00:00.061 / 00:02.134, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:02.136, 113Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.033 / 00:02.169, 113Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.130 / 00:02.299, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.021 / 00:02.320, 113Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.100 / 00:02.421, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.1.0... (00:00.562 / 00:02.983, 113Mb) Sushi: info Did not find hl7.terminology.r4#6.1.0 in /home/fhiruser/.fhir/packages. (00:00.031 / 00:03.015, 113Mb) Sushi: info Downloading hl7.terminology.r4#6.1.0... https://packages.fhir.org/hl7.terminology.r4/6.1.0 (00:00.000 / 00:03.015, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.1.0 (00:02.436 / 00:05.452, 113Mb) Sushi: info Loaded package hl7.terminology.r4#6.1.0 (00:02.183 / 00:07.636, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.448 / 00:08.085, 113Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.520 / 00:08.605, 113Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:08.605, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.878 / 00:10.484, 113Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.373 / 00:11.858, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.be.core#current... (00:00.000 / 00:11.858, 113Mb) Sushi: info Did not find hl7.fhir.be.core#current in /home/fhiruser/.fhir/packages. (00:00.737 / 00:12.596, 113Mb) Sushi: info Downloading hl7.fhir.be.core#current... https://build.fhir.org/ig/hl7-be/core/branches/master/package.tgz (00:00.056 / 00:12.653, 113Mb) Sushi: info Downloaded hl7.fhir.be.core#current (00:00.018 / 00:12.671, 113Mb) Sushi: info Loaded package hl7.fhir.be.core#current (00:00.859 / 00:13.531, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.be.core-clinical#current... (00:00.000 / 00:13.532, 113Mb) Sushi: info Did not find hl7.fhir.be.core-clinical#current in /home/fhiruser/.fhir/packages. (00:00.744 / 00:14.276, 113Mb) Sushi: info Downloading hl7.fhir.be.core-clinical#current... https://build.fhir.org/ig/hl7-be/core-clinical/branches/master/package.tgz (00:00.053 / 00:14.329, 113Mb) Sushi: info Downloaded hl7.fhir.be.core-clinical#current (00:00.016 / 00:14.345, 113Mb) Sushi: info Loaded package hl7.fhir.be.core-clinical#current (00:00.841 / 00:15.187, 113Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r4 (00:00.000 / 00:15.188, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:15.188, 113Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.000 / 00:15.188, 113Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:15.189, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.921 / 00:18.111, 113Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:01.941 / 00:20.052, 113Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r5 (00:00.000 / 00:20.053, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r5.core#5.0.0... (00:00.000 / 00:20.053, 113Mb) Sushi: info Did not find hl7.fhir.r5.core#5.0.0 in /home/fhiruser/.fhir/packages. (00:00.000 / 00:20.053, 113Mb) Sushi: info Downloading hl7.fhir.r5.core#5.0.0... https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.000 / 00:20.054, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:02.692 / 00:22.746, 113Mb) Sushi: info Loaded package hl7.fhir.r5.core#5.0.0 (00:02.300 / 00:25.047, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:25.047, 113Mb) Sushi: info Found hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:01.736 / 00:26.784, 113Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:26.784, 113Mb) Sushi: info Found 2 files in input/* resource folders that were neither XML nor JSON. These files were not processed as resources by SUSHI. To see the unprocessed files in the logs, run SUSHI with the "--log-level debug" flag. (00:00.065 / 00:26.850, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.002 / 00:26.852, 113Mb) Sushi: error No definition for the type "(BePractitionerRole)" could be found. (00:00.611 / 00:27.463, 113Mb) Sushi: File: /scratch/repo/input/fsh/profiles/BeAnnex81.fsh (00:00.000 / 00:27.464, 113Mb) Sushi: Line: 46 (00:00.000 / 00:27.464, 113Mb) Sushi: info Converted 17 FHIR StructureDefinitions. (00:01.198 / 00:28.663, 113Mb) Sushi: info Converted 4 FHIR CodeSystems. (00:01.838 / 00:30.502, 121Mb) Sushi: warn ValueSet BeVSAnnex81ReasonCode already includes http://snomed.info/sct|http://snomed.info/sct/11000172109#68345001 (00:00.043 / 00:30.546, 121Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/BeVSAnnex81ReasonCode.fsh (00:00.000 / 00:30.546, 121Mb) Sushi: Line: 13 (00:00.000 / 00:30.546, 121Mb) Sushi: info Converted 10 FHIR ValueSets. (00:00.757 / 00:31.304, 121Mb) Sushi: info Converted 51 FHIR instances. (00:04.627 / 00:35.931, 121Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:35.932, 121Mb) Sushi: info Exported 81 FHIR resources as JSON. (00:00.081 / 00:36.014, 121Mb) Sushi: info Assembling Implementation Guide sources... (00:00.004 / 00:36.018, 121Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.be.referral.json (00:00.044 / 00:36.063, 121Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:36.063, 121Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:36.065, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:36.065, 121Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:36.066, 121Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:36.066, 121Mb) Sushi: | | 8 | 3 | 6 | 0 | | (00:00.000 / 00:36.066, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:36.066, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:36.066, 121Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:36.067, 121Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:36.067, 121Mb) Sushi: | | 10 | 4 | 51 | | (00:00.000 / 00:36.067, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:36.067, 121Mb) Sushi: | | (00:00.000 / 00:36.068, 121Mb) Sushi: =================================================================== (00:00.000 / 00:36.068, 121Mb) Sushi: | Dolphinately not the desired outcome. 1 Error 1 Warning | (00:00.000 / 00:36.068, 121Mb) Sushi: =================================================================== (00:00.000 / 00:36.068, 121Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.062 / 00:36.131, 121Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:36.132, 121Mb) Exception: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:36.132, 121Mb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:36.132, 121Mb) (00:00.000 / 00:36.132, 121Mb) Use -? to get command line help (00:00.000 / 00:36.132, 121Mb) (00:00.000 / 00:36.133, 121Mb) Stack Dump (for debugging): (00:00.000 / 00:36.133, 121Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2654) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1066) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:14137)