INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-be/referral --branch issue-399 repo DEBUG:root:Time to deadline 35879.996998 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35799.093259 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35797.769574 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 120 packages in 6s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.0 npm notice Changelog: npm notice Run `npm install -g npm@10.9.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/referral/ -out /scratch/repo DEBUG:root:Time to deadline 35791.871123 seconds FHIR IG Publisher Version 1.7.3 (Git# a923509a20e1). Built 2024-11-19T18:44:24.736Z (22 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/referral/ -out /scratch/repo Start Clock @ Wednesday, November 20, 2024, 4:49:37 PM Coordinated Universal Time (2024-11-20T16:49:37Z) Build FHIR IG from /scratch/repo (00:00.028 / 00:00.028, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.032, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.035, 89Mb) Run Sushi on /scratch/repo (00:00.004 / 00:00.040, 89Mb) Sushi: info Running SUSHI v3.12.1 (implements FHIR Shorthand specification v3.0.0) (00:00.616 / 00:00.656, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.657, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.657, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.658, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.658, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.944 / 00:01.603, 113Mb) Sushi: info Importing FSH text... (00:00.146 / 00:01.749, 113Mb) Sushi: info Preprocessed 80 documents with 33 aliases. (00:00.454 / 00:02.203, 113Mb) Sushi: info Imported 27 definitions and 52 instances. (00:00.062 / 00:02.265, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:02.268, 113Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.028 / 00:02.296, 113Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.152 / 00:02.449, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.027 / 00:02.476, 113Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.100 / 00:02.576, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.1.0... (00:00.540 / 00:03.117, 113Mb) Sushi: info Did not find hl7.terminology.r4#6.1.0 in /home/fhiruser/.fhir/packages. (00:00.022 / 00:03.139, 113Mb) Sushi: info Downloading hl7.terminology.r4#6.1.0... https://packages.fhir.org/hl7.terminology.r4/6.1.0 (00:00.000 / 00:03.140, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.1.0 (00:02.214 / 00:05.354, 113Mb) Sushi: info Loaded package hl7.terminology.r4#6.1.0 (00:02.211 / 00:07.565, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.476 / 00:08.042, 113Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.411 / 00:08.453, 113Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:08.453, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.842 / 00:10.296, 113Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.290 / 00:11.587, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.be.core#current... (00:00.000 / 00:11.587, 113Mb) Sushi: info Did not find hl7.fhir.be.core#current in /home/fhiruser/.fhir/packages. (00:00.607 / 00:12.195, 113Mb) Sushi: info Downloading hl7.fhir.be.core#current... https://build.fhir.org/ig/hl7-be/core/branches/master/package.tgz (00:00.063 / 00:12.258, 113Mb) Sushi: info Downloaded hl7.fhir.be.core#current (00:00.075 / 00:12.334, 113Mb) Sushi: info Loaded package hl7.fhir.be.core#current (00:00.649 / 00:12.984, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.be.core-clinical#current... (00:00.000 / 00:12.985, 113Mb) Sushi: info Did not find hl7.fhir.be.core-clinical#current in /home/fhiruser/.fhir/packages. (00:00.686 / 00:13.671, 113Mb) Sushi: info Downloading hl7.fhir.be.core-clinical#current... https://build.fhir.org/ig/hl7-be/core-clinical/branches/master/package.tgz (00:00.075 / 00:13.747, 113Mb) Sushi: info Downloaded hl7.fhir.be.core-clinical#current (00:00.099 / 00:13.847, 113Mb) Sushi: info Loaded package hl7.fhir.be.core-clinical#current (00:00.636 / 00:14.483, 113Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r4 (00:00.000 / 00:14.484, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:14.484, 113Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.000 / 00:14.484, 113Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:14.484, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.948 / 00:17.433, 113Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:01.773 / 00:19.206, 113Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r5 (00:00.000 / 00:19.207, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r5.core#5.0.0... (00:00.000 / 00:19.207, 113Mb) Sushi: info Did not find hl7.fhir.r5.core#5.0.0 in /home/fhiruser/.fhir/packages. (00:00.000 / 00:19.207, 113Mb) Sushi: info Downloading hl7.fhir.r5.core#5.0.0... https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.000 / 00:19.207, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:02.981 / 00:22.189, 113Mb) Sushi: info Loaded package hl7.fhir.r5.core#5.0.0 (00:02.074 / 00:24.264, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:24.265, 113Mb) Sushi: info Found hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:01.395 / 00:25.660, 113Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:25.660, 113Mb) Sushi: info Found 2 files in input/* resource folders that were neither XML nor JSON. These files were not processed as resources by SUSHI. To see the unprocessed files in the logs, run SUSHI with the "--log-level debug" flag. (00:00.051 / 00:25.712, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.001 / 00:25.714, 113Mb) Sushi: info Converted 13 FHIR StructureDefinitions. (00:01.236 / 00:26.950, 113Mb) Sushi: info Converted 4 FHIR CodeSystems. (00:01.356 / 00:28.306, 113Mb) Sushi: warn ValueSet BeVSAnnex81ReasonCode already includes http://snomed.info/sct|http://snomed.info/sct/11000172109#68345001 (00:00.023 / 00:28.330, 113Mb) Sushi: File: /scratch/repo/input/fsh/valuesets/BeVSAnnex81ReasonCode.fsh (00:00.000 / 00:28.330, 113Mb) Sushi: Line: 6 (00:00.000 / 00:28.330, 113Mb) Sushi: info Converted 10 FHIR ValueSets. (00:00.543 / 00:28.874, 113Mb) Sushi: info Converted 52 FHIR instances. (00:03.508 / 00:32.382, 121Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:32.383, 121Mb) Sushi: info Exported 78 FHIR resources as JSON. (00:00.066 / 00:32.450, 121Mb) Sushi: info Assembling Implementation Guide sources... (00:00.003 / 00:32.453, 121Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.be.referral.json (00:00.033 / 00:32.487, 121Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:32.487, 121Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:32.488, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:32.488, 121Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:32.489, 121Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:32.489, 121Mb) Sushi: | | 8 | 3 | 2 | 0 | | (00:00.000 / 00:32.489, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:32.489, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:32.489, 121Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:32.490, 121Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:32.490, 121Mb) Sushi: | | 10 | 4 | 52 | | (00:00.000 / 00:32.490, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:32.490, 121Mb) Sushi: | | (00:00.000 / 00:32.490, 121Mb) Sushi: =================================================================== (00:00.000 / 00:32.490, 121Mb) Sushi: | You should gut it out. 0 Errors 1 Warning | (00:00.000 / 00:32.491, 121Mb) Sushi: =================================================================== (00:00.000 / 00:32.491, 121Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.760 / 00:33.251, 37Mb) Load Template from hl7.be.fhir.template#current (00:00.574 / 00:33.826, 69Mb) Installing hl7.be.fhir.template#current to the package cache Fetching: Installing hl7.be.fhir.template#current done. Load Template from fhir.base.template#current (00:01.703 / 00:35.530, 142Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:03.649 / 00:39.180, 134Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:39.182, 134Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-12638900754094933679.log Connect to Terminology Server at http://tx.fhir.org (00:44.007 / 01:23.190, 591Mb) Installing hl7.fhir.pubpack#0.1.8 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.8 done. Load Package hl7.fhir.pubpack#0.1.8 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.1.0 Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing hl7.terminology.r4#6.0.2 to the package cache Fetching: Installing hl7.terminology.r4#6.0.2 done. Load Package hl7.terminology.r4#6.0.2 Load Package hl7.fhir.be.core#2.1.2 Load Package hl7.fhir.be.core#2.1.2 Load Package hl7.fhir.be.core-clinical#1.0.1 Installing hl7.fhir.uv.tools.r4#0.3.0 to the package cache Fetching: Installing hl7.fhir.uv.tools.r4#0.3.0 done. Load Package hl7.fhir.uv.tools.r4#0.3.0 Load R5 Specials Initialization complete (00:14.684 / 01:37.874, 913Mb) Load Content (00:00.000 / 01:37.875, 913Mb) Using en-US as the default narrative language. (no language information in Implementation Guide or command line) (00:00.088 / 01:37.963, 921Mb) loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch https://www.ehealth.fgov.be/standards/fhir/referral/package-list.json for version check (00:00.780 / 01:38.743, 1001Mb) Processing Conformance Resources (00:00.869 / 01:39.612, 1001Mb) Load Dependency Info (00:00.002 / 01:39.615, 1001Mb) Load Info (00:00.001 / 01:39.617, 1001Mb) Load Resources (00:00.000 / 01:39.617, 1005Mb) Load Paths (00:00.365 / 01:39.983, 1Gb) Generating Snapshots (00:00.000 / 01:39.983, 1Gb) Check R4 / R4B (00:00.760 / 01:40.745, 497Mb) Assign Comparison Ids (00:00.019 / 01:40.764, 497Mb) Propagating status (00:00.000 / 01:40.765, 497Mb) Generating Narratives (00:00.000 / 01:40.765, 497Mb) Validating Conformance Resources (02:04.390 / 03:45.155, 1Gb) Check profiles & code systems (00:12.307 / 03:57.463, 2Gb) Check realm rules (00:00.003 / 03:57.466, 2Gb) Previous Version Comparison (00:00.000 / 03:57.466, 2Gb) Validating Resources (00:00.028 / 03:57.495, 2Gb) Processing Provenance Records (00:38.994 / 04:36.489, 3Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 04:36.489, 3Gb) Generate Native Outputs (00:00.352 / 04:36.842, 3Gb) Run Template (00:07.880 / 04:44.723, 4Gb) onGenerate.checkVersions: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/versions.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 20 files to /scratch/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.1.xml to /scratch/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.2.xml to /scratch/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: [copy] Copying 1 file to /scratch/repo/temp/pages/_data prepareDiagramSource: [mkdir] Created dir: /scratch/repo/temp/pages/scenarios [xslt] Transforming into /scratch/repo/temp/pages/scenarios renderDiagram: [java] No diagram found createExampleScenarioPage: [xslt] Transforming into /scratch/repo/temp/pages/_includes [xslt] Transforming into /scratch/repo/temp/pages/_includes [xslt] Transforming into /scratch/repo/temp/pages/_includes onGenerate.extend: onGenerate: Template Done (00:03.673 / 04:48.397, 4Gb) Generate HTML Outputs (00:00.000 / 04:48.397, 4Gb) ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-BeModelNursingPrescription::StructureDefinition/BeModelNursingPrescription: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:05.357 / 04:53.755, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:53.756, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:53.756, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-BeModelReferralPrescription::StructureDefinition/BeModelReferralPrescription: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:00.533 / 04:54.290, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:54.290, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:54.290, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:54.290, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:54.290, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:54.291, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:54.291, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:54.291, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:54.291, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:54.291, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-annex-81::StructureDefinition/be-annex-81: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:01.025 / 04:55.317, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:55.317, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:55.317, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-ext-latest-end-date::StructureDefinition/be-ext-latest-end-date: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:00.089 / 04:55.407, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:55.407, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:55.407, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-ext-performer-type::StructureDefinition/be-ext-performer-type: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:00.092 / 04:55.500, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:55.501, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:55.501, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-ext-validity-period::StructureDefinition/be-ext-validity-period: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:00.123 / 04:55.625, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:55.625, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:55.625, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:55.625, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:55.625, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:55.626, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:55.626, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:55.626, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:55.626, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:55.626, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-no-contained-reference::StructureDefinition/be-no-contained-reference: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:00.121 / 04:55.747, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:55.747, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:55.747, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:55.747, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:55.747, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:55.747, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:55.747, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:55.748, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:55.748, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:55.748, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-organization-task::StructureDefinition/be-organization-task: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null (00:00.484 / 04:56.233, 6Gb) java.lang.NullPointerException: Cannot invoke "String.contains(java.lang.CharSequence)" because "exp" is null at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) at org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) at org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.references(StructureDefinitionRenderer.java:2093) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:12946) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtmlInner(Publisher.java:11586) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateResourceHtml(Publisher.java:11558) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generateHtmlOutputs(Publisher.java:11002) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7897) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) (00:00.000 / 04:56.233, 6Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893) (00:00.000 / 04:56.233, 6Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-performer-task::StructureDefinition/be-performer-task: null (00:00.707 / 04:56.941, 934Mb) java.lang.NullPointerException Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-referral-servicerequest-nursing::StructureDefinition/be-referral-servicerequest-nursing: null (00:01.074 / 04:58.016, 1Gb) java.lang.NullPointerException Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-referral-servicerequest::StructureDefinition/be-referral-servicerequest: null (00:00.642 / 04:58.658, 971Mb) java.lang.NullPointerException Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-referral-task::StructureDefinition/be-referral-task: null (00:00.209 / 04:58.867, 1Gb) java.lang.NullPointerException Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-be-year-month-day::StructureDefinition/be-year-month-day: null (00:00.035 / 04:58.903, 1Gb) java.lang.NullPointerException Generate Summaries (00:05.347 / 05:04.251, 2Gb) Generating Summary Outputs (00:00.000 / 05:04.251, 2Gb) DB Cumulative Time invested: 00:00:04.421 Sending Usage Stats to Server (00:08.355 / 05:12.606, 4Gb) ## Memory (MB): Use = 4411, Free = 14596, Total = 19008, Max = 19008 (00:00.007 / 05:12.614, 4Gb) Reclaiming memory... (00:00.000 / 05:12.614, 4Gb) ## Memory (MB): Use = 948, Free = 18059, Total = 19008, Max = 19008 (00:01.113 / 05:13.727, 960Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.002 / 05:13.729, 960Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 05:13.730, 960Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 05:13.730, 960Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 05:13.730, 960Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.478 / 05:14.208, 972Mb) Jekyll: Generating... (00:00.000 / 05:14.208, 972Mb) Jekyll has failed. Complete output from running Jekyll:  Liquid Exception: Could not locate the included file 'StructureDefinition-BeModelNursingPrescription-sd-xref.xhtml' in any of ["/scratch/repo/temp/pages/_includes"]. Ensure it exists in one of those directories and, if it is a symlink, does not poin (00:00.777 / 05:14.985, 980Mb) Note: Check that Jekyll is installed correctly (00:00.000 / 05:14.985, 980Mb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.022 / 05:15.008, 980Mb) (00:00.000 / 05:15.008, 980Mb) Use -? to get command line help (00:00.000 / 05:15.008, 980Mb) (00:00.000 / 05:15.008, 980Mb) Stack Dump (for debugging): (00:00.000 / 05:15.008, 980Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.Publisher.runJekyll(Publisher.java:8886) at org.hl7.fhir.igtools.publisher.Publisher.runTool(Publisher.java:8773) at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:7980) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1255) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1072) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13893)