INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-be/patient-dossier --branch main repo DEBUG:root:Time to deadline 35879.9981 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.630643 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.210177 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.8.0 npm notice Changelog: npm notice Run `npm install -g npm@11.8.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/patient-dossier/ -out /scratch/repo DEBUG:root:Time to deadline 35871.111995 seconds FHIR IG Publisher Version 2.0.30 (Git# 04ebe87f19c1). Built 2026-01-20T18:29:40.591Z (8 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/patient-dossier/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Wednesday, January 28, 2026, 7:01:01 PM Coordinated Universal Time (2026-01-28T19:01:01Z) Build FHIR IG from /scratch/repo (00:00.028 / 00:00.029, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.032, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.036, 97Mb) Found dependency on hl7.fhir.be.core#current in Sushi config. Pre-installing (00:00.009 / 00:00.045, 97Mb) Installing hl7.fhir.be.core#current to the package cache  Fetching:  Installing hl7.fhir.be.core#current  done. Run Sushi on /scratch/repo (00:01.986 / 00:02.031, 72Mb) Sushi: info Running SUSHI v3.17.0 (implements FHIR Shorthand specification v3.0.0) (00:00.780 / 00:02.812, 80Mb) Sushi: info Arguments: (00:00.000 / 00:02.813, 80Mb) Sushi: info --require-latest (00:00.000 / 00:02.813, 80Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:02.813, 80Mb) Sushi: info /scratch/repo (00:00.000 / 00:02.814, 80Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.837 / 00:03.651, 80Mb) Sushi: info Importing FSH text... (00:00.158 / 00:03.810, 80Mb) Sushi: info Preprocessed 1 documents with 0 aliases. (00:00.070 / 00:03.880, 80Mb) Sushi: info Imported 1 definitions and 0 instances. (00:00.006 / 00:03.887, 80Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.144 / 00:04.032, 80Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.9.0 (00:00.624 / 00:04.657, 80Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.9.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.9.0 (00:00.001 / 00:04.658, 80Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.9.0 (00:00.825 / 00:05.483, 80Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.9.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.9.0 (00:00.003 / 00:05.486, 80Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.9.0 with 117 resources (00:00.092 / 00:05.578, 80Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.468 / 00:06.047, 80Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:06.048, 80Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:03.061 / 00:09.109, 80Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.001 / 00:09.110, 80Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.718 / 00:10.829, 88Mb) Sushi: info Loaded hl7.fhir.be.core#current with 43 resources (00:00.119 / 00:10.948, 88Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:10.949, 88Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.260 / 00:14.209, 88Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:14.211, 88Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.615 / 00:15.826, 88Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.562 / 00:16.389, 88Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:16.390, 88Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.556 / 00:17.946, 88Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.002 / 00:17.948, 88Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.404 / 00:18.353, 88Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.017 / 00:18.371, 88Mb) Sushi: info Converting FSH to FHIR resources... (00:00.023 / 00:18.394, 88Mb) Sushi: error Cannot read properties of undefined (reading 'sdType') (00:00.171 / 00:18.566, 88Mb) Sushi: File: /scratch/repo/input/fsh/BeProcedure.fsh (00:00.000 / 00:18.566, 88Mb) Sushi: Line: 22 (00:00.000 / 00:18.566, 88Mb) Sushi: info Converted 1 FHIR StructureDefinitions. (00:00.053 / 00:18.620, 88Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:18.621, 88Mb) Sushi: info Exported 1 FHIR resources as JSON. (00:00.008 / 00:18.630, 88Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:18.631, 88Mb) Sushi: warn (00:00.054 / 00:18.686, 88Mb) Sushi: !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! IMPORTANT !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! (00:00.000 / 00:18.686, 88Mb) Sushi: Your ig.ini file does NOT point to the Implementation Guide resource that SUSHI generates. As a (00:00.000 / 00:18.686, 88Mb) Sushi: result, the IG Publisher will IGNORE the SUSHI-generated ImplementationGuide resource. To fix this, (00:00.000 / 00:18.687, 88Mb) Sushi: please do one of the following: (00:00.000 / 00:18.687, 88Mb) Sushi: - Update your ig.ini file with 'ig = fsh-generated/resources/ImplementationGuide-hl7.fhir.be.patient-dossier.json' (recommended), or (00:00.000 / 00:18.687, 88Mb) Sushi: - Update your sushi-config.yaml file with 'FSHOnly: true' to tell SUSHI NOT to generate the IG resource (00:00.000 / 00:18.687, 88Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.be.patient-dossier.json (00:00.000 / 00:18.687, 88Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:18.688, 88Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:18.690, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.690, 88Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:18.690, 88Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.691, 88Mb) Sushi: | | 0 | 0 | 1 | 0 | | (00:00.000 / 00:18.691, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.691, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.691, 88Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:18.691, 88Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.692, 88Mb) Sushi: | | 0 | 0 | 0 | | (00:00.000 / 00:18.692, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.692, 88Mb) Sushi: | | (00:00.000 / 00:18.692, 88Mb) Sushi: =================================================================== (00:00.000 / 00:18.692, 88Mb) Sushi: | You are off course, sailor! 1 Error 1 Warning | (00:00.000 / 00:18.693, 88Mb) Sushi: =================================================================== (00:00.000 / 00:18.693, 88Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.015 / 00:18.709, 88Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:18.709, 88Mb) Exception: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:18.709, 88Mb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:18.710, 88Mb) (00:00.000 / 00:18.710, 88Mb) Use -? to get command line help (00:00.000 / 00:18.710, 88Mb) (00:00.000 / 00:18.710, 88Mb) Stack Dump (for debugging): (00:00.000 / 00:18.710, 88Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:143) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:222) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1594)