INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/fhir-fi/finnish-scheduling --branch master repo DEBUG:root:Time to deadline 35879.997821 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.630903 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.361292 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 128 packages in 5s 11 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.0 npm notice Changelog: npm notice Run `npm install -g npm@10.9.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/fhir-fi/finnish-scheduling/ -out /scratch/repo DEBUG:root:Time to deadline 35872.969634 seconds FHIR IG Publisher Version 1.6.29 (Git# 7b9937a4c22a). Built 2024-10-08T16:17:01.152Z (24 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/fhir-fi/finnish-scheduling/ -out /scratch/repo Start Clock @ Wednesday, October 9, 2024, 4:36:50 PM Coordinated Universal Time (2024-10-09T16:36:50Z) Build FHIR IG from /scratch/repo (00:00.033 / 00:00.034, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.037, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.041, 89Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.048, 89Mb) Sushi: info Running SUSHI v3.11.1 (implements FHIR Shorthand specification v3.0.0-ballot) (00:00.695 / 00:00.743, 97Mb) Sushi: info Arguments: (00:00.000 / 00:00.743, 97Mb) Sushi: info --require-latest (00:00.000 / 00:00.744, 97Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.744, 97Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.745, 97Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.702 / 00:01.447, 97Mb) Sushi: info Importing FSH text... (00:00.162 / 00:01.610, 97Mb) Sushi: info Preprocessed 33 documents with 3 aliases. (00:00.247 / 00:01.857, 97Mb) Sushi: info Imported 28 definitions and 4 instances. (00:00.020 / 00:01.877, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:01.880, 97Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.028 / 00:01.908, 97Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.138 / 00:02.047, 97Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.014 / 00:02.062, 97Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.112 / 00:02.175, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.0.2... (00:00.498 / 00:02.673, 97Mb) Sushi: info Did not find hl7.terminology.r4#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.032 / 00:02.705, 97Mb) Sushi: info Downloading hl7.terminology.r4#6.0.2... https://packages.fhir.org/hl7.terminology.r4/6.0.2 (00:00.000 / 00:02.706, 97Mb) Sushi: info Downloaded hl7.terminology.r4#6.0.2 (00:01.997 / 00:04.704, 97Mb) Sushi: info Loaded package hl7.terminology.r4#6.0.2 (00:02.224 / 00:06.928, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.420 / 00:07.348, 97Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.522 / 00:07.870, 97Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:07.871, 97Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.850 / 00:09.721, 97Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.437 / 00:11.158, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.fi.base#1.0.0... (00:00.419 / 00:11.577, 97Mb) Sushi: info Did not find hl7.fhir.fi.base#1.0.0 in /home/fhiruser/.fhir/packages. (00:00.751 / 00:12.329, 97Mb) Sushi: info Downloading hl7.fhir.fi.base#1.0.0... https://packages.fhir.org/hl7.fhir.fi.base/1.0.0 (00:00.000 / 00:12.329, 97Mb) Sushi: info Downloaded hl7.fhir.fi.base#1.0.0 (00:01.293 / 00:13.623, 97Mb) Sushi: info Loaded package hl7.fhir.fi.base#1.0.0 (00:00.890 / 00:14.513, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:14.513, 97Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.877 / 00:15.391, 97Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:15.392, 97Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.688 / 00:18.080, 97Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:02.979 / 00:21.059, 97Mb) Sushi: info Converting FSH to FHIR resources... (00:00.063 / 00:21.122, 97Mb) Sushi: info Converted 28 FHIR StructureDefinitions. (00:02.833 / 00:23.956, 97Mb) Sushi: info Converted 4 FHIR instances. (00:00.253 / 00:24.209, 97Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:24.210, 97Mb) Sushi: info Exported 32 FHIR resources as JSON. (00:00.076 / 00:24.287, 97Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:24.289, 97Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.fi.scheduling.json (00:00.040 / 00:24.330, 97Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:24.330, 97Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:24.332, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.332, 97Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:24.333, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:24.333, 97Mb) Sushi: | | 5 | 23 | 0 | 0 | | (00:00.000 / 00:24.333, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.334, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.334, 97Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:24.334, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:24.335, 97Mb) Sushi: | | 0 | 0 | 4 | | (00:00.000 / 00:24.335, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.335, 97Mb) Sushi: | | (00:00.000 / 00:24.335, 97Mb) Sushi: =================================================================== (00:00.000 / 00:24.336, 97Mb) Sushi: | Valedictorian of the School of FSH! 0 Errors 0 Warnings | (00:00.000 / 00:24.336, 97Mb) Sushi: =================================================================== (00:00.000 / 00:24.336, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.866 / 00:25.203, 37Mb) Load Template from https://github.com/fhir-fi/ig-template-fhir-fi (00:00.705 / 00:25.908, 70Mb) Load Template from fhir.base.template#current (00:00.919 / 00:26.828, 86Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:05.336 / 00:32.164, 135Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:32.167, 135Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-14821947586806644049.log Connect to Terminology Server at http://tx.fhir.org (00:29.946 / 01:02.113, 594Mb) Installing hl7.fhir.pubpack#0.1.8 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.8 done. Load Package hl7.fhir.pubpack#0.1.8 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.0.2 Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing hl7.terminology.r4#5.3.0 to the package cache Fetching: Installing hl7.terminology.r4#5.3.0 done. Load Package hl7.terminology.r4#5.3.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.ipa#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.ipa#1.0.0 done. Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: Installing hl7.terminology.r4#5.0.0 done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.smart-app-launch#2.0.0 done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Load Package hl7.fhir.uv.ipa#1.0.0 Load Package hl7.fhir.fi.base#1.0.0 Installing hl7.fhir.uv.tools#0.2.0 to the package cache Fetching: Installing hl7.fhir.uv.tools#0.2.0 done. Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.tools' is from version 5.0.0 (will try to run anyway) (00:38.481 / 01:40.595, 1Gb) Load Package hl7.fhir.uv.tools#0.2.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (00:03.763 / 01:44.358, 799Mb) Load Content (00:00.000 / 01:44.358, 799Mb) Using fi_FI as the default narrative language. (inferred from ImplementationGuide.jurisdiction=FI) (00:00.092 / 01:44.451, 807Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch https://hl7.fi/fhir/finnish-scheduling/package-list.json for version check (00:01.368 / 01:45.820, 855Mb) Fetch http://hl7.org/fhir/uv/ipa/package-list.json for version check (00:00.637 / 01:46.457, 858Mb) Processing Conformance Resources (00:00.130 / 01:46.588, 858Mb) Load Dependency Info (00:00.001 / 01:46.590, 858Mb) Load Info (00:00.002 / 01:46.592, 858Mb) Load Resources (00:00.000 / 01:46.592, 862Mb) Load Paths (00:00.486 / 01:47.078, 911Mb) Generating Snapshots (00:00.000 / 01:47.079, 911Mb) Check R4 / R4B (00:01.312 / 01:48.391, 1Gb) Assign Comparison Ids (00:00.012 / 01:48.404, 1Gb) Propagating status (00:00.000 / 01:48.404, 1Gb) Generating Narratives (00:00.000 / 01:48.404, 1Gb) Validating Conformance Resources (00:02.167 / 01:50.572, 908Mb) Check profiles & code systems (00:11.240 / 02:01.813, 560Mb) Check realm rules (00:00.002 / 02:01.816, 560Mb) Previous Version Comparison (00:00.000 / 02:01.816, 560Mb) Installing hl7.fhir.fi.scheduling#0.2.0 to the package cache Fetching: Installing hl7.fhir.fi.scheduling#0.2.0 done. Validating Resources (00:16.879 / 02:18.696, 1Gb) Processing Provenance Records (00:00.417 / 02:19.113, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 02:19.114, 1Gb) Generate Native Outputs (00:00.220 / 02:19.335, 1Gb) Run Template (00:04.740 / 02:24.075, 1Gb) onGenerate.checkVersions: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/versions.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 19 files to /scratch/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.1.xml to /scratch/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.2.xml to /scratch/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.extend: onGenerate: Template Done (00:01.381 / 02:25.456, 1Gb) Generate HTML Outputs (00:00.000 / 02:25.456, 1Gb) ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Generate Summaries (00:13.142 / 02:38.599, 2Gb) Generating Summary Outputs (00:00.040 / 02:38.639, 2Gb) DB Cumulative Time invested: 00:00:00.504 Sending Usage Stats to Server (00:12.885 / 02:51.524, 2Gb) ## Memory (MB): Use = 2255, Free = 16752, Total = 19008, Max = 19008 (00:00.010 / 02:51.535, 2Gb) Reclaiming memory... (00:00.000 / 02:51.535, 2Gb) ## Memory (MB): Use = 1284, Free = 17723, Total = 19008, Max = 19008 (00:01.463 / 02:52.999, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.002 / 02:53.002, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:53.002, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:53.002, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:53.002, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.512 / 02:53.515, 1Gb) Jekyll: Generating... (00:00.000 / 02:53.515, 1Gb) Jekyll: done in 2.44 seconds. (00:02.439 / 02:55.954, 1Gb) Checking Output HTML (00:02.720 / 02:58.675, 2Gb) found 1003 files (00:00.008 / 02:58.683, 2Gb) ........................................ ........................................ ... 1003 html files, 0 pages invalid xhtml (0%) (00:12.921 / 03:11.605, 4Gb) ... 119599 links, 4 broken links (0%) (00:00.000 / 03:11.605, 4Gb) Generate fragment-usage-analysis.csv (00:00.000 / 03:11.605, 4Gb) Build final .zip (00:00.007 / 03:11.613, 4Gb) Final .zip built (00:02.602 / 03:14.216, 4Gb) Built. Times: loading: 00:02.229, generate: 01:31.403, narrative generation: 00:02.167, realm-rules: 00:00.000, previous-version: 00:16.847, jekyll: 00:02.974, validation: 00:11.505 (#35), template: 00:01.380 (#3) (00:03.810 / 03:18.026, 5Gb) Generating QA (00:00.000 / 03:18.026, 5Gb) Validation output in /scratch/repo/output/qa.html Errors: 14, Warnings: 44, Info: 2, Broken Links: 4 (00:00.931 / 03:18.957, 5Gb) Finished. Max Memory Used = 5Gb (00:00.018 / 03:18.976, 5Gb)